FC875341

Overview
NameFC875341
Unique NameFC875341
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPA (Chaperone protein dnaK OS=Rhodopseudomonas palustris GN=dnaK PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.784e-41
Identity = 62/116 (53.45%), Postives = 83/116 (71.55%), Query Frame = 3
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRR+ D  V+ D  L P+K++        +    + + K ++  ++S+ +L KM+E AEA+LG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGL
Sbjct:   70 KRLIGRRYDDPMVEKDKGLVPYKIVKASNGDAWV----EADGKTYSPSQVSAFILQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 181          

HSP 2 Score: 66.2402 bits (160), Expect = 3.784e-41
Identity = 35/66 (53.03%), Postives = 39/66 (59.09%), Query Frame = 1
Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVF 321
            G  IGIDLGTT SCV V      ++I N +G RTTPS V  TD  ERL+G  AK Q   NP  T F
Sbjct:    2 GKVIGIDLGTTNSCVAVMDGKSAKVIENAEGMRTTPSIVAITDDGERLVGQPAKRQAVTNPERTFF 67          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_CARRP (Chaperone protein dnaK OS=Carsonella ruddii (strain PV) GN=dnaK PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.786e-41
Identity = 65/116 (56.03%), Postives = 84/116 (72.41%), Query Frame = 3
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F D  VQ D+K+ P+K+I+       + V    ++K+ A  +IS+ +L KM+  AE +L   +  AV+TVPAYFNDSQRQATKDAG IAGL V+RIINEPTAAA+AYGL
Sbjct:   70 KRLIGRKFKDDIVQKDIKMVPYKIISSENGDAWVEV----KDKKLAPPQISAEILKKMKITAENFLNEKVTKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 181          

HSP 2 Score: 66.6254 bits (161), Expect = 3.786e-41
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1
Query:  136 IGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLI-GDAAKNQVAMNPTNTVF 321
            IGIDLGTT SC+ V  + + ++I N +G RTTPS VG+T+  R+I G  AK Q   NP NT++
Sbjct:    5 IGIDLGTTNSCIAVLSNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPKNTLY 67          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_BURCH (Chaperone protein dnaK OS=Burkholderia cenocepacia (strain HI2424) GN=dnaK PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.928e-41
Identity = 68/116 (58.62%), Postives = 82/116 (70.69%), Query Frame = 3
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRRF +  VQ D+ L P+ +I   AD     V   GE+   A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V RIINEPTAAA+A+GL
Sbjct:   70 KRLIGRRFEEKEVQKDIGLMPYSIIK--ADNGDAWVEAHGEK--LAPPQVSAEVLRKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAFGL 181          

HSP 2 Score: 68.1662 bits (165), Expect = 4.928e-41
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 1
Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGF-TDTERLIGDAAKNQVAMNPTNTVF 321
            G  IGIDLGTT SCV + + ++V++I N +G RTTPS + +  D E L+G  AK Q   NP NT+F
Sbjct:    2 GKIIGIDLGTTNSCVAIMEGNQVKVIENSEGTRTTPSIIAYMDDNEVLVGAPAKRQSVTNPKNTLF 67          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_BURCC (Chaperone protein dnaK OS=Burkholderia cenocepacia (strain MC0-3) GN=dnaK PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.928e-41
Identity = 68/116 (58.62%), Postives = 82/116 (70.69%), Query Frame = 3
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRRF +  VQ D+ L P+ +I   AD     V   GE+   A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V RIINEPTAAA+A+GL
Sbjct:   70 KRLIGRRFEEKEVQKDIGLMPYSIIK--ADNGDAWVEAHGEK--LAPPQVSAEVLRKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAFGL 181          

HSP 2 Score: 68.1662 bits (165), Expect = 4.928e-41
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 1
Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGF-TDTERLIGDAAKNQVAMNPTNTVF 321
            G  IGIDLGTT SCV + + ++V++I N +G RTTPS + +  D E L+G  AK Q   NP NT+F
Sbjct:    2 GKIIGIDLGTTNSCVAIMEGNQVKVIENSEGTRTTPSIIAYMDDNEVLVGAPAKRQSVTNPKNTLF 67          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_BURCA (Chaperone protein dnaK OS=Burkholderia cenocepacia (strain AU 1054) GN=dnaK PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.928e-41
Identity = 68/116 (58.62%), Postives = 82/116 (70.69%), Query Frame = 3
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRRF +  VQ D+ L P+ +I   AD     V   GE+   A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V RIINEPTAAA+A+GL
Sbjct:   70 KRLIGRRFEEKEVQKDIGLMPYSIIK--ADNGDAWVEAHGEK--LAPPQVSAEVLRKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAFGL 181          

HSP 2 Score: 68.1662 bits (165), Expect = 4.928e-41
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 1
Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGF-TDTERLIGDAAKNQVAMNPTNTVF 321
            G  IGIDLGTT SCV + + ++V++I N +G RTTPS + +  D E L+G  AK Q   NP NT+F
Sbjct:    2 GKIIGIDLGTTNSCVAIMEGNQVKVIENSEGTRTTPSIIAYMDDNEVLVGAPAKRQSVTNPKNTLF 67          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_LEPCP (Chaperone protein dnaK OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=dnaK PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.929e-41
Identity = 68/116 (58.62%), Postives = 86/116 (74.14%), Query Frame = 3
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F++  VQ D+ L P+K+ A  AD     V  +G  K+ A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+A+GL
Sbjct:   70 KRLIGRKFTEKEVQKDIDLMPYKIAA--ADNGDAWVEVRG--KRMAPPQVSAEVLRKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAFGL 181          

HSP 2 Score: 64.6994 bits (156), Expect = 4.929e-41
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 1
Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGF-TDTERLIGDAAKNQVAMNPTNTVF 321
            G  IGIDLGTT SCV V + +   +I N +G RTTPS + +  D E L+G +AK Q   NP NT++
Sbjct:    2 GKIIGIDLGTTNSCVAVMEGNTTRVIENSEGARTTPSIIAYQEDGEILVGASAKRQAVTNPRNTLY 67          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_CHRSD (Chaperone protein dnaK OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=dnaK PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.929e-41
Identity = 67/116 (57.76%), Postives = 82/116 (70.69%), Query Frame = 3
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F D  VQ D+K+ P+ +    AD     V  KG +   A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V RIINEPTAAA+AYG+
Sbjct:   70 KRLIGRKFKDDVVQKDIKMVPYTI--AEADNGDAWVEVKGNK--LAPPQVSAEVLKKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAYGM 181          

HSP 2 Score: 68.1662 bits (165), Expect = 4.929e-41
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVF 321
            G  IGIDLGTT SCV +      ++I N +G RTTPS + +TD  E L+G AAK Q   NP+NT++
Sbjct:    2 GRIIGIDLGTTNSCVAILDGGNAKVIENAEGARTTPSIIAYTDDGETLVGQAAKRQAVTNPSNTLY 67          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_PROMH (Chaperone protein dnaK OS=Proteus mirabilis (strain HI4320) GN=dnaK PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 4.929e-41
Identity = 69/116 (59.48%), Postives = 85/116 (73.28%), Query Frame = 3
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRRF DA VQ D+ + P+K+I   AD     V  + E+   A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAAA+AYGL
Sbjct:   70 KRLIGRRFEDAEVQRDVSIMPYKIIK--ADNGDAWVEARNEK--MAPPQVSAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAYGL 181          

HSP 2 Score: 63.1586 bits (152), Expect = 4.929e-41
Identity = 33/66 (50.00%), Postives = 39/66 (59.09%), Query Frame = 1
Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVF 321
            G  IGIDLGTT SCV V       +I N +G+RTTPS V +  D E L+G  AK Q   N  NT+F
Sbjct:    2 GKIIGIDLGTTNSCVAVMDGKNARVIENGEGDRTTPSIVAYAQDGEILVGQPAKRQAVTNSQNTLF 67          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_XANC5 (Chaperone protein dnaK OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=dnaK PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.929e-41
Identity = 65/116 (56.03%), Postives = 84/116 (72.41%), Query Frame = 3
Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F+D  VQ D+   P+ ++A       +  +   + K+ A +EIS+ VL KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYGL
Sbjct:   70 KRLIGRKFTDGEVQKDISHVPYGILAHDNGDAWVQTS---DAKRMAPQEISARVLEKMKKTAEDFLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGL 182          

HSP 2 Score: 67.0106 bits (162), Expect = 4.929e-41
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 1
Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVF 321
            G  IGIDLGTT SCV +    +  +I N +G+RTTPS V +T D E L+G +AK Q   NP NT +
Sbjct:    2 GKIIGIDLGTTNSCVSIMDGGKARVIENSEGDRTTPSIVAYTKDGEVLVGASAKRQAVTNPKNTFY 67          
BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: DNAK_PSE14 (Chaperone protein dnaK OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=dnaK PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.929e-41
Identity = 65/124 (52.42%), Postives = 86/124 (69.35%), Query Frame = 3
Query:  303 PHEHRL*CKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            PH      KRLIGR+F +  VQ D+++ P+K++        + VN     ++ A  +IS+ +L KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYG+
Sbjct:   62 PHNTLYAVKRLIGRKFEEDVVQKDIQMVPYKIVKADNGDAWVEVN----GQKMAPPQISAEILKKMKKTAEDYLGEAVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGM 181          

HSP 2 Score: 65.855 bits (159), Expect = 4.929e-41
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 1
Query:  136 IGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGF-TDTERLIGDAAKNQVAMNPTNTVF 321
            IGIDLGTT SCV + ++  V++I N +G RTTPS + +  D E L+G +AK Q   NP NT++
Sbjct:    5 IGIDLGTTNSCVSILENGNVKVIENAEGTRTTPSIIAYANDGEILVGQSAKRQAVTNPHNTLY 67          
The following BLAST results are available for this feature:
BLAST of FC875341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_RHOPA3.784e-4153.45Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_CARRP3.786e-4156.03Chaperone protein dnaK OS=Carsonella ruddii (strai... [more]
DNAK_BURCH4.928e-4158.62Chaperone protein dnaK OS=Burkholderia cenocepacia... [more]
DNAK_BURCC4.928e-4158.62Chaperone protein dnaK OS=Burkholderia cenocepacia... [more]
DNAK_BURCA4.928e-4158.62Chaperone protein dnaK OS=Burkholderia cenocepacia... [more]
DNAK_LEPCP4.929e-4158.62Chaperone protein dnaK OS=Leptothrix cholodnii (st... [more]
DNAK_CHRSD4.929e-4157.76Chaperone protein dnaK OS=Chromohalobacter salexig... [more]
DNAK_PROMH4.929e-4159.48Chaperone protein dnaK OS=Proteus mirabilis (strai... [more]
DNAK_XANC54.929e-4156.03Chaperone protein dnaK OS=Xanthomonas campestris p... [more]
DNAK_PSE144.929e-4152.42Chaperone protein dnaK OS=Pseudomonas syringae pv.... [more]

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Properties
Property NameValue
Genbank descriptionC31402H03EF CTVClemen1 Citrus clementina cDNA clone C31402H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875341 ID=FC875341; Name=FC875341; organism=Citrus clementina; type=EST; length=674bp
GAGAACCCATACAAGTTTTTTATTTTTTAGATTTGAGATCTATTTTTGTT
TTTCTTCGCTGTCAAAGCAAACTACTTTATTCTCCTTTTCCTTGCTTGAG
TTTTGATAATGGCCGGAAAAGGAGAGGGACCAGCGATCGGTATCGATTTG
GGGACGACGTACTCCTGCGTCGGAGTCTGGCAGCATGACAGAGTCGAGAT
TATCGCCAATGACCAAGGGAACCGGACGACGCCGTCTTATGTGGGGTTCA
CCGACACGGAGCGTTTGATCGGGGACGCTGCTAAGAACCAGGTCGCCATG
AACCCCACGAACACCGTCTTTGATGCAAGAGGTTGATTGGTAGGAGATTC
AGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCATTTAAGGTGAT
TGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTACAAGGGCGAAG
AGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGCTCATCAAGATG
CGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAGAATGCAGTCGT
TACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGCCACCAAGGATG
CCGGTGTCATTGCTGGGCTTAATGTGATGCGTATCATCAACGAGCCCACT
GCTGCTGCCATTGCTTATGGCCTT
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