FC875341 | Citrus Genome Database

Overview


Name	FC875341
Unique Name	FC875341
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	674

Libraries


Library Name	Type
CTVClemen1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig10212	contig	Ccv1_Contig10212:1..675.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP71_ANOAL (Heat shock protein 70 A1 OS=Anopheles albimanus GN=HSP70A1 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.792e-73
Identity = 86/116 (74.14%), Postives = 95/116 (81.90%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F D  +Q DMK WPF V+     KP I V +KGE K FA EEISSMVL KM+E AEAYLG ++KNAV+TVPAYFNDSQRQATKDAG IAGLNVMRIINEPTAAA+AYGL
Sbjct:   69 KRLIGRKFDDPKIQADMKHWPFTVV-NDCGKPKIRVEFKGERKTFAPEEISSMVLTKMKETAEAYLGQSVKNAVITVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAALAYGL 183

HSP 2 Score: 126.331 bits (316), Expect = 2.792e-73
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 1

Query:  133 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV F+DTERLIGDAAKNQVAMNPTNTVFDA+
Sbjct:    4 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVAMNPTNTVFDAK 69

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP70_BRUMA (Heat shock 70 kDa protein OS=Brugia malayi GN=HSP70 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.641e-73
Identity = 86/124 (69.35%), Postives = 97/124 (78.23%), Query Frame = 3

Query:  303 PHEHRL*CKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            PH       RLIGR+F D SVQ DMK WPFKV+     KP + V YKGE K F  EEISSMVL+KM+E AEA+LG  +K+AV+TVPAYFNDSQRQATKD+G IAGLNV+RIINEPTAAAIAYGL
Sbjct:   62 PHNTVFDANRLIGRKFDDGSVQSDMKHWPFKVVNAGGGKPKVQVEYKGETKTFTPEEISSMVLVKMKETAEAFLGHAVKDAVITVPAYFNDSQRQATKDSGAIAGLNVLRIINEPTAAAIAYGL 185

HSP 2 Score: 122.479 bits (306), Expect = 3.641e-73
Identity = 59/65 (90.77%), Postives = 61/65 (93.85%), Query Frame = 1

Query:  133 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDA 327
            AIGIDLGTTYSCVGV+ H +VEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVAMNP NTVFDA
Sbjct:    5 AIGIDLGTTYSCVGVFMHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNTVFDA 69

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP71_CANFA (Heat shock 70 kDa protein 1 OS=Canis familiaris GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.641e-73
Identity = 88/116 (75.86%), Postives = 97/116 (83.62%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F D  VQ DMK WPF+V+    DKP + V+YKGE K F  EEISSMVL KM+EIAEAYLG  + NAV+TVPAYFNDSQRQATKDAGVIAGLNV+RIINEPTAAAIAYGL
Sbjct:   71 KRLIGRKFGDPVVQSDMKHWPFQVV-NDGDKPKVQVSYKGETKAFYPEEISSMVLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGL 185

HSP 2 Score: 124.405 bits (311), Expect = 3.641e-73
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1

Query:  133 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVA+NP NTVFDA+
Sbjct:    6 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAK 71

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HS71L_MACFA (Heat shock 70 kDa protein 1-like OS=Macaca fascicularis GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 4.749e-73
Identity = 87/116 (75.00%), Postives = 97/116 (83.62%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F+D  VQ DMKLWPF+VI     KP + V+YKGE K F  EEISSMVL KM+E AEA+LG  + NAV+TVPAYFNDSQRQATKDAGVIAGLNV+RIINEPTAAAIAYGL
Sbjct:   73 KRLIGRKFNDPVVQSDMKLWPFQVI-NEGGKPKVLVSYKGENKAFYPEEISSMVLTKMKETAEAFLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGL 187

HSP 2 Score: 127.102 bits (318), Expect = 4.749e-73
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 1

Query:  124 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            +G AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVAMNP NTVFDA+
Sbjct:    5 KGIAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAK 73

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HS71L_HUMAN (Heat shock 70 kDa protein 1-like OS=Homo sapiens GN=HSPA1L PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 1.053e-72
Identity = 86/116 (74.14%), Postives = 97/116 (83.62%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F+D  VQ DMKLWPF+VI     KP + V+YKGE K F  EEISSMVL K++E AEA+LG  + NAV+TVPAYFNDSQRQATKDAGVIAGLNV+RIINEPTAAAIAYGL
Sbjct:   73 KRLIGRKFNDPVVQADMKLWPFQVI-NEGGKPKVLVSYKGENKAFYPEEISSMVLTKLKETAEAFLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGL 187

HSP 2 Score: 127.102 bits (318), Expect = 1.053e-72
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 1

Query:  124 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            +G AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVAMNP NTVFDA+
Sbjct:    5 KGIAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAK 73

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP70_AJECA (Heat shock 70 kDa protein OS=Ajellomyces capsulata GN=HSP70 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.373e-72
Identity = 88/116 (75.86%), Postives = 97/116 (83.62%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F+D  VQ DMK +PFK I     KP+I V +KGE K+F  EEISSMVL KMRE AEAYLG T+ NAVVTVPAYFNDSQRQATKDAG+IAGLNV+RIINEPTAAAIAYGL
Sbjct:   69 KRLIGRKFADPEVQADMKHFPFK-ITDKGGKPVIQVEFKGETKEFTPEEISSMVLTKMRETAEAYLGGTVNNAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGL 183

HSP 2 Score: 124.79 bits (312), Expect = 1.373e-72
Identity = 57/67 (85.07%), Postives = 64/67 (95.52%), Query Frame = 1

Query:  130 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            PA+GIDLGTTYSCVG+++ DR+EIIANDQGNRTTPS+V FTDTERLIGDAAKNQVAMNP NTVFDA+
Sbjct:    3 PAVGIDLGTTYSCVGIFRDDRIEIIANDQGNRTTPSFVAFTDTERLIGDAAKNQVAMNPANTVFDAK 69

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HS71A_PIG (Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA1A PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.374e-72
Identity = 89/116 (76.72%), Postives = 97/116 (83.62%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F D  VQGDMK WPF+VI    DKP + V+YKGE K F  EEISSMVL KM+EIAE YLG  + NAV+TVPAYFNDSQRQATKDAGVIAGLNV+RIINEPTAAAIAYGL
Sbjct:   71 KRLIGRKFGDPVVQGDMKHWPFRVI-NDGDKPKVQVSYKGETKGFYPEEISSMVLTKMKEIAEGYLGHPVSNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGL 185

HSP 2 Score: 120.939 bits (302), Expect = 1.374e-72
Identity = 58/66 (87.88%), Postives = 62/66 (93.94%), Query Frame = 1

Query:  133 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPS V FTDTERLIGDAAKNQVA+NP NTVFDA+
Sbjct:    6 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSSVAFTDTERLIGDAAKNQVALNPQNTVFDAK 71

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP7B_DROME (Heat shock 70 kDa protein cognate 2 OS=Drosophila melanogaster GN=Hsc70-2 PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 1.374e-72
Identity = 88/116 (75.86%), Postives = 97/116 (83.62%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F D  +Q D+KLWPFKVI     KP I V +KGE K+FA EEISSMVL KMREIAE YLG  +K+AVVTVPAYFNDSQRQATKDAG IAGLNV+RIINEPTAAA+AYGL
Sbjct:   71 KRLIGRKFDDKKIQEDLKLWPFKVI-NEKGKPKIEVEFKGERKRFAPEEISSMVLTKMREIAEVYLGGKVKDAVVTVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGL 185

HSP 2 Score: 122.479 bits (306), Expect = 1.374e-72
Identity = 58/70 (82.86%), Postives = 63/70 (90.00%), Query Frame = 1

Query:  121 GEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            G+ PAIGIDLGTTYSCVGVWQ+ +VEIIANDQGNRTTPSYV F +TERLIGD AKNQVAMN  NTVFDA+
Sbjct:    2 GKIPAIGIDLGTTYSCVGVWQNSKVEIIANDQGNRTTPSYVAFNETERLIGDPAKNQVAMNAKNTVFDAK 71

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP70_XENLA (Heat shock 70 kDa protein OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.791e-72
Identity = 84/116 (72.41%), Postives = 97/116 (83.62%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F+D  VQ D+K WPF+V++    KP + V YKGEEK F  EEISSMVL KM+E AEAYLG  + NAV+TVPAYFNDSQRQATKDAGV+AGLN++RIINEPTAAAIAYGL
Sbjct:   72 KRLIGRKFNDPVVQCDLKHWPFQVVSDEG-KPKVKVEYKGEEKSFFPEEISSMVLTKMKETAEAYLGHPVTNAVITVPAYFNDSQRQATKDAGVLAGLNILRIINEPTAAAIAYGL 186

HSP 2 Score: 127.102 bits (318), Expect = 1.791e-72
Identity = 60/69 (86.96%), Postives = 65/69 (94.20%), Query Frame = 1

Query:  124 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            +G A+GIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVAMNP NTVFDA+
Sbjct:    4 KGVAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAK 72

[Close]

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP70_ECHGR (Heat shock cognate 70 kDa protein OS=Echinococcus granulosus GN=HSP70 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.046e-72
Identity = 83/116 (71.55%), Postives = 95/116 (81.90%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRRF D +VQ D+K W FKVI     KP I V Y+GE K F+AEEISSMVL+KM+E AEAYLG  + + V++VPAYFNDSQRQATKDAG I+GLNV+RIINEPTAAAIAYGL
Sbjct:   72 KRLIGRRFDDRAVQDDIKHWAFKVI-NAGGKPKIEVEYRGETKCFSAEEISSMVLLKMKETAEAYLGKKVSDTVISVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGL 186

HSP 2 Score: 131.339 bits (329), Expect = 3.046e-72
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 1

Query:  124 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            +GPA+GIDLGTT+SCVGV+QH +VEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVAMNPTNTVFDA+
Sbjct:    4 KGPAVGIDLGTTFSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAK 72

The following BLAST results are available for this feature:

BLAST of FC875341 vs. ExPASy Swiss-Prot

BLAST of FC875341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
HSP71_ANOAL	2.792e-73	74.14	Heat shock protein 70 A1 OS=Anopheles albimanus GN...	[more]
HSP70_BRUMA	3.641e-73	69.35	Heat shock 70 kDa protein OS=Brugia malayi GN=HSP7...	[more]
HSP71_CANFA	3.641e-73	75.86	Heat shock 70 kDa protein 1 OS=Canis familiaris GN...	[more]
HS71L_MACFA	4.749e-73	75.00	Heat shock 70 kDa protein 1-like OS=Macaca fascicu...	[more]
HS71L_HUMAN	1.053e-72	74.14	Heat shock 70 kDa protein 1-like OS=Homo sapiens G...	[more]
HSP70_AJECA	1.373e-72	75.86	Heat shock 70 kDa protein OS=Ajellomyces capsulata...	[more]
HS71A_PIG	1.374e-72	76.72	Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA...	[more]
HSP7B_DROME	1.374e-72	75.86	Heat shock 70 kDa protein cognate 2 OS=Drosophila ...	[more]
HSP70_XENLA	1.791e-72	72.41	Heat shock 70 kDa protein OS=Xenopus laevis PE=2 S...	[more]
HSP70_ECHGR	3.046e-72	71.55	Heat shock cognate 70 kDa protein OS=Echinococcus ...	[more]

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Properties


Property Name	Value
Genbank description	C31402H03EF CTVClemen1 Citrus clementina cDNA clone C31402H03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC875341 ID=FC875341; Name=FC875341; organism=Citrus clementina; type=EST; length=674bp
GAGAACCCATACAAGTTTTTTATTTTTTAGATTTGAGATCTATTTTTGTT
TTTCTTCGCTGTCAAAGCAAACTACTTTATTCTCCTTTTCCTTGCTTGAG
TTTTGATAATGGCCGGAAAAGGAGAGGGACCAGCGATCGGTATCGATTTG
GGGACGACGTACTCCTGCGTCGGAGTCTGGCAGCATGACAGAGTCGAGAT
TATCGCCAATGACCAAGGGAACCGGACGACGCCGTCTTATGTGGGGTTCA
CCGACACGGAGCGTTTGATCGGGGACGCTGCTAAGAACCAGGTCGCCATG
AACCCCACGAACACCGTCTTTGATGCAAGAGGTTGATTGGTAGGAGATTC
AGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCATTTAAGGTGAT
TGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTACAAGGGCGAAG
AGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGCTCATCAAGATG
CGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAGAATGCAGTCGT
TACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGCCACCAAGGATG
CCGGTGTCATTGCTGGGCTTAATGTGATGCGTATCATCAACGAGCCCACT
GCTGCTGCCATTGCTTATGGCCTT