FC875341 | Citrus Genome Database

Overview


Name	FC875341
Unique Name	FC875341
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	674

Libraries


Library Name	Type
CTVClemen1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig10212	contig	Ccv1_Contig10212:1..675.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP75_DROME (Major heat shock 70 kDa protein Bc OS=Drosophila melanogaster GN=Hsp70Bc PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.047e-72
Identity = 85/116 (73.28%), Postives = 97/116 (83.62%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR++ D  +  DMK WPFKV++    KP IGV YKGE K+FA EEISSMVL KM+E AEAYLG +I +AV+TVPAYFNDSQRQATKDAG IAGLNV+RIINEPTAAA+AYGL
Sbjct:   68 KRLIGRKYDDPKIAEDMKHWPFKVVSD-GGKPKIGVEYKGESKRFAPEEISSMVLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALAYGL 182

HSP 2 Score: 125.176 bits (313), Expect = 3.047e-72
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 1

Query:  130 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            PAIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTD+ERLIGD AKNQVAMNP NTVFDA+
Sbjct:    2 PAIGIDLGTTYSCVGVYQHGKVEIIANDQGNRTTPSYVAFTDSERLIGDPAKNQVAMNPRNTVFDAK 68

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP74_DROME (Major heat shock 70 kDa protein Bbb OS=Drosophila melanogaster GN=Hsp70Bbb PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.047e-72
Identity = 85/116 (73.28%), Postives = 97/116 (83.62%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR++ D  +  DMK WPFKV++    KP IGV YKGE K+FA EEISSMVL KM+E AEAYLG +I +AV+TVPAYFNDSQRQATKDAG IAGLNV+RIINEPTAAA+AYGL
Sbjct:   68 KRLIGRKYDDPKIAEDMKHWPFKVVSD-GGKPKIGVEYKGESKRFAPEEISSMVLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALAYGL 182

HSP 2 Score: 125.176 bits (313), Expect = 3.047e-72
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 1

Query:  130 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            PAIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTD+ERLIGD AKNQVAMNP NTVFDA+
Sbjct:    2 PAIGIDLGTTYSCVGVYQHGKVEIIANDQGNRTTPSYVAFTDSERLIGDPAKNQVAMNPRNTVFDAK 68

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP73_DROME (Major heat shock 70 kDa protein Bb OS=Drosophila melanogaster GN=Hsp70Bb PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.047e-72
Identity = 85/116 (73.28%), Postives = 97/116 (83.62%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR++ D  +  DMK WPFKV++    KP IGV YKGE K+FA EEISSMVL KM+E AEAYLG +I +AV+TVPAYFNDSQRQATKDAG IAGLNV+RIINEPTAAA+AYGL
Sbjct:   68 KRLIGRKYDDPKIAEDMKHWPFKVVSD-GGKPKIGVEYKGESKRFAPEEISSMVLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALAYGL 182

HSP 2 Score: 125.176 bits (313), Expect = 3.047e-72
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 1

Query:  130 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            PAIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTD+ERLIGD AKNQVAMNP NTVFDA+
Sbjct:    2 PAIGIDLGTTYSCVGVYQHGKVEIIANDQGNRTTPSYVAFTDSERLIGDPAKNQVAMNPRNTVFDAK 68

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP72_DROSI (Major heat shock 70 kDa protein Ba OS=Drosophila simulans GN=Hsp70Ba PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.047e-72
Identity = 85/116 (73.28%), Postives = 97/116 (83.62%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR++ D  +  DMK WPFKV++    KP IGV YKGE K+FA EEISSMVL KM+E AEAYLG +I +AV+TVPAYFNDSQRQATKDAG IAGLNV+RIINEPTAAA+AYGL
Sbjct:   68 KRLIGRKYDDPKIAEDMKHWPFKVVSD-CGKPKIGVEYKGESKRFAPEEISSMVLAKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALAYGL 182

HSP 2 Score: 125.176 bits (313), Expect = 3.047e-72
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 1

Query:  130 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            PAIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTD+ERLIGD AKNQVAMNP NTVFDA+
Sbjct:    2 PAIGIDLGTTYSCVGVYQHGKVEIIANDQGNRTTPSYVAFTDSERLIGDPAKNQVAMNPRNTVFDAK 68

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP72_DROME (Major heat shock 70 kDa protein Ba OS=Drosophila melanogaster GN=Hsp70Ba PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.047e-72
Identity = 85/116 (73.28%), Postives = 97/116 (83.62%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR++ D  +  DMK WPFKV++    KP IGV YKGE K+FA EEISSMVL KM+E AEAYLG +I +AV+TVPAYFNDSQRQATKDAG IAGLNV+RIINEPTAAA+AYGL
Sbjct:   68 KRLIGRKYDDPKIAEDMKHWPFKVVSD-GGKPKIGVEYKGESKRFAPEEISSMVLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALAYGL 182

HSP 2 Score: 125.176 bits (313), Expect = 3.047e-72
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 1

Query:  130 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            PAIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTD+ERLIGD AKNQVAMNP NTVFDA+
Sbjct:    2 PAIGIDLGTTYSCVGVYQHGKVEIIANDQGNRTTPSYVAFTDSERLIGDPAKNQVAMNPRNTVFDAK 68

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP71_DROME (Major heat shock 70 kDa protein Ab OS=Drosophila melanogaster GN=Hsp70Ab PE=1 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 3.047e-72
Identity = 85/116 (73.28%), Postives = 97/116 (83.62%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR++ D  +  DMK WPFKV++    KP IGV YKGE K+FA EEISSMVL KM+E AEAYLG +I +AV+TVPAYFNDSQRQATKDAG IAGLNV+RIINEPTAAA+AYGL
Sbjct:   68 KRLIGRKYDDPKIAEDMKHWPFKVVSD-GGKPKIGVEYKGESKRFAPEEISSMVLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALAYGL 182

HSP 2 Score: 125.176 bits (313), Expect = 3.047e-72
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 1

Query:  130 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            PAIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTD+ERLIGD AKNQVAMNP NTVFDA+
Sbjct:    2 PAIGIDLGTTYSCVGVYQHGKVEIIANDQGNRTTPSYVAFTDSERLIGDPAKNQVAMNPRNTVFDAK 68

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP70_DROME (Major heat shock 70 kDa protein Aa OS=Drosophila melanogaster GN=Hsp70Aa PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.047e-72
Identity = 85/116 (73.28%), Postives = 97/116 (83.62%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR++ D  +  DMK WPFKV++    KP IGV YKGE K+FA EEISSMVL KM+E AEAYLG +I +AV+TVPAYFNDSQRQATKDAG IAGLNV+RIINEPTAAA+AYGL
Sbjct:   68 KRLIGRKYDDPKIAEDMKHWPFKVVSD-GGKPKIGVEYKGESKRFAPEEISSMVLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALAYGL 182

HSP 2 Score: 125.176 bits (313), Expect = 3.047e-72
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 1

Query:  130 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            PAIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTD+ERLIGD AKNQVAMNP NTVFDA+
Sbjct:    2 PAIGIDLGTTYSCVGVYQHGKVEIIANDQGNRTTPSYVAFTDSERLIGDPAKNQVAMNPRNTVFDAK 68

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP70_SCHMA (Heat shock 70 kDa protein homolog OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 3.047e-72
Identity = 87/116 (75.00%), Postives = 97/116 (83.62%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGRRF D SVQ DMK WPF+V      K  I V YKGE+K F+AEEISSMVL KM+E+AE+YLG T+ +AV+TVPAYFNDSQRQATKDAG IAGLNV+RIINEPTAAAIAYGL
Sbjct:   69 KRLIGRRFDDPSVQSDMKHWPFEVTQ-VGGKLKICVEYKGEKKMFSAEEISSMVLTKMKEVAESYLGRTVSDAVITVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGL 183

HSP 2 Score: 124.79 bits (312), Expect = 3.047e-72
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1

Query:  133 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTD+ERLIGD AKNQVAMNPTNTVFDA+
Sbjct:    4 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDSERLIGDGAKNQVAMNPTNTVFDAK 69

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP71_DROSI (Major heat shock 70 kDa protein Ab OS=Drosophila simulans GN=Hsp70Ab PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 5.183e-72
Identity = 84/116 (72.41%), Postives = 98/116 (84.48%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR++ D  +  D+K WPFKV++    KP IGV YKGE K+FA EEISSMVL+KM+E AEAYLG +I +AV+TVPAYFNDSQRQATKDAG IAGLNV+RIINEPTAAA+AYGL
Sbjct:   68 KRLIGRKYDDPKIAEDIKHWPFKVVSD-GGKPKIGVEYKGESKRFAPEEISSMVLVKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLRIINEPTAAALAYGL 182

HSP 2 Score: 124.405 bits (311), Expect = 5.183e-72
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 1

Query:  130 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            PAIGIDLGTTYSCVGV+QH  VEIIANDQGNRTTPSYV FTD+ERLIGD AKNQVAMNP NTVFDA+
Sbjct:    2 PAIGIDLGTTYSCVGVYQHGEVEIIANDQGNRTTPSYVAFTDSERLIGDPAKNQVAMNPRNTVFDAK 68

BLAST of FC875341 vs. ExPASy Swiss-Prot
Match: HSP70_THEPA (Heat shock 70 kDa protein OS=Theileria parva GN=TP02_0148 PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 6.759e-72
Identity = 88/116 (75.86%), Postives = 99/116 (85.34%), Query Frame = 3

Query:  327 KRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL 674
            KRLIGR+F D +VQ DMK WPFKV  GP  KP I V ++GE+K F AEEISSMVL KM+EIAEA+LG ++K+ V+TVPAYFNDSQRQATKDAG IAGLNVMRIINEPTAAAIAYGL
Sbjct:   70 KRLIGRKFDDRTVQEDMKHWPFKVTNGPNGKPNIEVTFQGEKKTFHAEEISSMVLTKMKEIAEAFLGKSVKDVVITVPAYFNDSQRQATKDAGTIAGLNVMRIINEPTAAAIAYGL 185

HSP 2 Score: 116.701 bits (291), Expect = 6.759e-72
Identity = 55/68 (80.88%), Postives = 60/68 (88.24%), Query Frame = 1

Query:  127 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAR 330
            GPAIGIDLGTTYSCV V++ + VEII NDQGNRTTPSYV FTDTERLIGDAAKNQ A NP NT+FDA+
Sbjct:    3 GPAIGIDLGTTYSCVAVYKDNNVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQEARNPENTIFDAK 70

The following BLAST results are available for this feature:

BLAST of FC875341 vs. ExPASy Swiss-Prot

BLAST of FC875341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
HSP75_DROME	3.047e-72	73.28	Major heat shock 70 kDa protein Bc OS=Drosophila m...	[more]
HSP74_DROME	3.047e-72	73.28	Major heat shock 70 kDa protein Bbb OS=Drosophila ...	[more]
HSP73_DROME	3.047e-72	73.28	Major heat shock 70 kDa protein Bb OS=Drosophila m...	[more]
HSP72_DROSI	3.047e-72	73.28	Major heat shock 70 kDa protein Ba OS=Drosophila s...	[more]
HSP72_DROME	3.047e-72	73.28	Major heat shock 70 kDa protein Ba OS=Drosophila m...	[more]
HSP71_DROME	3.047e-72	73.28	Major heat shock 70 kDa protein Ab OS=Drosophila m...	[more]
HSP70_DROME	3.047e-72	73.28	Major heat shock 70 kDa protein Aa OS=Drosophila m...	[more]
HSP70_SCHMA	3.047e-72	75.00	Heat shock 70 kDa protein homolog OS=Schistosoma m...	[more]
HSP71_DROSI	5.183e-72	72.41	Major heat shock 70 kDa protein Ab OS=Drosophila s...	[more]
HSP70_THEPA	6.759e-72	75.86	Heat shock 70 kDa protein OS=Theileria parva GN=TP...	[more]

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Properties


Property Name	Value
Genbank description	C31402H03EF CTVClemen1 Citrus clementina cDNA clone C31402H03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC875341 ID=FC875341; Name=FC875341; organism=Citrus clementina; type=EST; length=674bp
GAGAACCCATACAAGTTTTTTATTTTTTAGATTTGAGATCTATTTTTGTT
TTTCTTCGCTGTCAAAGCAAACTACTTTATTCTCCTTTTCCTTGCTTGAG
TTTTGATAATGGCCGGAAAAGGAGAGGGACCAGCGATCGGTATCGATTTG
GGGACGACGTACTCCTGCGTCGGAGTCTGGCAGCATGACAGAGTCGAGAT
TATCGCCAATGACCAAGGGAACCGGACGACGCCGTCTTATGTGGGGTTCA
CCGACACGGAGCGTTTGATCGGGGACGCTGCTAAGAACCAGGTCGCCATG
AACCCCACGAACACCGTCTTTGATGCAAGAGGTTGATTGGTAGGAGATTC
AGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCATTTAAGGTGAT
TGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTACAAGGGCGAAG
AGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGCTCATCAAGATG
CGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAGAATGCAGTCGT
TACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGCCACCAAGGATG
CCGGTGTCATTGCTGGGCTTAATGTGATGCGTATCATCAACGAGCCCACT
GCTGCTGCCATTGCTTATGGCCTT