FC875342

Overview
NameFC875342
Unique NameFC875342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15457 contig Ccv1_Contig15457:89..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875342 vs. ExPASy Swiss-Prot
Match: SAT_STACT (Sulfate adenylyltransferase OS=Staphylococcus carnosus (strain TM300) GN=sat PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 43/154 (27.92%), Postives = 78/154 (50.65%), Query Frame = 3
Query:  192 PDGGKLTELIVDKSLRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVIAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIG 653
            P GG+L    ++ + R+   +EA   P++ L    L  + +++ G  SPL+GFM E+++   +   +L L DG++   S+PI L + +EQ       +++AL   DD +  +L+  E + + KE+     +GTT    P V +       +L G
Sbjct:   14 PHGGELINRQLEGAEREALIKEAEAFPKLTLNAWSLSDLELIAIGGFSPLTGFMGEADYTNVVE--NLHLADGTL--WSIPITLPVTEEQADAYELGSKIALYGEDDKLYGVLDLQEKFTYDKEKEAENVYGTTEEAHPGVKKVYEKGNVYLAG 163          
BLAST of FC875342 vs. ExPASy Swiss-Prot
Match: SAT_HALOH (Sulfate adenylyltransferase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=sat PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 48/145 (33.10%), Postives = 75/145 (51.72%), Query Frame = 3
Query:  183 LIEPDGGKLTELIVDKSLRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVAL-VDSDDNVIAILNDIEIYKHPKEERIARTWGTTAPGLPYV 614
            +I+P GGKL   IV+ + R+   ++A  +PRI L + +L  V  ++ G  SPL GF+   ++ + +    +RL DG+V   S+P VL +  E+   + E   V L  + DD + AIL+  E Y    E      +GTT    P V
Sbjct:    1 MIKPHGGKLVNRIVEGAKREELIKKAGEMPRIMLNRDELTAVDNIATGLFSPLEGFLTSEDYNRVV--EEMRLADGTV--WSIPEVLGVTREEADNLKEGQDVGLYFEEDDELYAILHLEEKYTCDPEREAELVYGTTEEEHPGV 141          
The following BLAST results are available for this feature:
BLAST of FC875342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SAT_STACT2.734e-1127.92Sulfate adenylyltransferase OS=Staphylococcus carn... [more]
SAT_HALOH4.663e-1133.10Sulfate adenylyltransferase OS=Halothermothrix ore... [more]

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Properties
Property NameValue
Genbank descriptionC31402H04EF CTVClemen1 Citrus clementina cDNA clone C31402H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875342 ID=FC875342; Name=FC875342; organism=Citrus clementina; type=EST; length=681bp
GGGGTTCTCTCTCAGTTCAATTAACAATGGCCACCATGTCCACTCTGTTC
GCCAAAACCCCACTTCCCTCCCGATCCCTCTCCAAATCTAATATTTCCCA
TTTTGCTCCTCCCCTCACATCCCTCTCCTTCAAGCAAAAGACCACCGCCC
CCCATTTCAAGCTCCGGAGTATCCGGGCCGGGCTGATCGAACCGGACGGC
GGGAAGCTGACGGAGCTGATCGTCGACAAGTCGTTGAGGGACGTTAGGAA
GCGGGAGGCGGCGACGCTGCCGAGGATCAGGCTGACGAAGATTGACCTTC
AATGGGTACACGTGTTGAGCGAGGGTTGGGCCAGCCCTCTAAGCGGGTTC
ATGAGAGAATCCGAGTTCCTCCAAACTCTTCATTTCAACTCGCTCCGTCT
GGACGACGGGTCGGTTGTTAACATGTCCGTGCCGATCGTCTTGGCGATCG
ACGACGAGCAGAAGCGTCGGATTGGTGAGTCGACGCGTGTCGCTCTCGTT
GACTCCGATGACAACGTCATTGCGATTTTGAACGACATTGAGATCTACAA
GCACCCCAAAGAAGAAAGGATAGCCCGAACATGGGGGACAACTGCCCCTG
GTCTACCTTATGTTGACCAGGCCATAACTTATGCTGGAAATTGGCTGATT
GGANGTGACTTGGAGGTGCTAGAACCAATCA
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