FC875343

Overview
NameFC875343
Unique NameFC875343
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2979 contig Ccv1_Contig2979:25..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GH39_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.9 OS=Oryza sativa subsp. japonica GN=GH3.9 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 6.200e-71
Identity = 138/219 (63.01%), Postives = 162/219 (73.97%), Query Frame = 3
Query:    3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPAHSFGLTSSDPQPVDLVDVEVGKEYQLVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIESDKTDEAKLQNAIDNA-SRLLREFNTNVGEYTICANTKTIPGHYVIYWELLIKD-----SANSPNNEVLNQCCL 641
            IWPNTKY+D IVTGAMAQYI TL YYSGG LP+  T YASSEC+FG+NL P+C PSEVSYTIMPN AYFEFLP       G        VDL  VEVG+EY++VITTYAGL RYRVGD+LRVTGFHN+APQF FVRR++VLLS+E DKTDEA+L  A++ A S LLR    +V EYT  A T+ IPGHYV+YWELL +        ++ + E L +CCL
Sbjct:  142 IWPNTKYVDAIVTGAMAQYIRTLQYYSGG-LPIVSTSYASSECFFGINLRPVCDPSEVSYTIMPNTAYFEFLP------VGEVVDATNLVDLARVEVGREYEVVITTYAGLSRYRVGDVLRVTGFHNAAPQFRFVRRQSVLLSVELDKTDEAELHRAVERASSALLRPRGVSVAEYTSRACTERIPGHYVVYWELLTESPVGAGDGDTVDGETLGRCCL 353          
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GH31_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Oryza sativa subsp. japonica GN=GH3.1 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 9.898e-69
Identity = 123/214 (57.48%), Postives = 161/214 (75.23%), Query Frame = 3
Query:    3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPAHSFGLTSSDPQPVDLVDVEVGKEYQLVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIESDKTDEAKLQNAIDNASRLLREFNTNVGEYTICANTKTIPGHYVIYWELLIKDSANSPNNEVLNQCCLA 644
            +WP TKY+DVIVTG M+QYIPTL++Y GG LP+ CTMYASSECYFGLNLNP+C+PS+V+YT++P M Y+EFLP    ++    +S    VDLVDV++G EY+LV+TTY+GLYRYRVGD+LRV GF N AP F FVRR+NV LS++SDKTDE +L  A+  A + L  F  ++ EYT  A+  TIPGHYV++WEL  +  + +    V  +CCL+
Sbjct:  302 LWPRTKYIDVIVTGTMSQYIPTLEFYGGG-LPLTCTMYASSECYFGLNLNPMCKPSDVAYTLIPTMCYYEFLPVN-CNNATAEASHRDLVDLVDVKLGHEYELVVTTYSGLYRYRVGDVLRVAGFKNKAPMFSFVRRQNVALSVDSDKTDETELHAAVSGAVQHLAPFGASLVEYTSYADAATIPGHYVLFWEL--RAGSTAVPASVFEECCLS 511          
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GH317_ARATH (Indole-3-acetic acid-amido synthetase GH3.17 OS=Arabidopsis thaliana GN=GH3.17 PE=1 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.024e-65
Identity = 126/229 (55.02%), Postives = 167/229 (72.93%), Query Frame = 3
Query:    3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLP-----QEPAHSFGLTSSDPQP--------VDLVDVEVGKEYQLVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIESDKTDEAKLQNAIDNA--SRLLREFNTNVGEYTICANTKTIPGHYVIYWELLIKDSANSP--NNEVLNQCC 638
            IWP  KY++VIVTG+MAQYIPTL++YSGG LP+  TMYASSECYFG+NLNP+C P++VSYT++PNMAYFEFLP      E  H    +++D           V+LV+VEVG+ Y++VITT+ GLYRYRVGDIL+VTGFHN APQF FV+R+NV+LSI++DKT E  L NA+  A  + L    +  + EYT  A+T +IPGHYV++WEL  + S + P  +++ +  CC
Sbjct:  293 IWPKAKYVEVIVTGSMAQYIPTLEFYSGG-LPLVSTMYASSECYFGINLNPLCDPADVSYTLLPNMAYFEFLPVDDKSHEEIHFATHSNTDDDDDALKEDLIVNLVNVEVGQYYEIVITTFTGLYRYRVGDILKVTGFHNKAPQFRFVQRRNVVLSIDTDKTSEEDLLNAVTQAKLNHLQHPSSLLLTEYTSYADTSSIPGHYVLFWELKPRHSNDPPKLDDKTMEDCC 520          
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GH311_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.11 OS=Oryza sativa subsp. japonica GN=GH3.11 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 1.932e-64
Identity = 117/223 (52.47%), Postives = 161/223 (72.20%), Query Frame = 3
Query:    3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPAHSFGLTSSDPQPV-------DLVDVEVGKEYQLVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIESDKTDEAKLQNAIDNASRLLREFNTNVGEYTICANTKTIPGHYVIYWEL-LIKDSANSP-NNEVLNQCCLA 644
            +WPN KY++ ++TG MAQYIP L++Y GG +P  CTMYASSE YFG+NL+P+C P++VSYTI+PNMAYFEF+P E     GL  +D + V        LVDV+VG  Y+LV+TT++GLYRYRVGD+L+VTGF+N APQF F+ R+NV+LSI+SDKT+E  L N++  A ++L   N  + EYT   +  T+PGHYV++WE+    D   +P + ++L  CC A
Sbjct:  291 LWPNVKYIEAVLTGTMAQYIPMLEFYGGGAIPFVCTMYASSESYFGVNLSPLCSPADVSYTILPNMAYFEFIPLED----GLRLTDHEEVIENDKLVSLVDVKVGCYYELVVTTFSGLYRYRVGDVLQVTGFYNRAPQFKFICRRNVILSIDSDKTNEEDLHNSVTTAKKILENQNYLLLEYTSYTDISTVPGHYVLFWEIKSTHDERPAPLDAQLLESCCAA 509          
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GH310_ORYSJ (Putative indole-3-acetic acid-amido synthetase GH3.10 OS=Oryza sativa subsp. japonica GN=GH3.10 PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 5.816e-61
Identity = 120/189 (63.49%), Postives = 144/189 (76.19%), Query Frame = 3
Query:    3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPAHSFGLTSSDPQPVDLVDVEVGKEYQLVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIESDKTDEAKLQNAIDNA-SRLLREFNTNVGEYTICANTKTIPGHY 566
            +WP TK L+V+VTG MAQYIPTL YYSGG LP+   MYASSEC+FGLNL P+C PSEVSYTIMPN AYFEFLP       G        V+L  VE G+EY++V+TTYAGL RYRVGD+L VTGFHN+APQF FVRR++VLLSIE+DKTDEA+LQ A++ A S LLR    ++ EYT  A T+ +PGH+
Sbjct:  286 LWPKTKCLNVVVTGVMAQYIPTLQYYSGG-LPIVSGMYASSECFFGLNLRPLCGPSEVSYTIMPNTAYFEFLP------VGEAVDASNLVELARVEDGREYEVVVTTYAGLNRYRVGDVLCVTGFHNAAPQFRFVRRQSVLLSIEADKTDEAELQRAVERASSALLRPRGASIVEYTSRACTERVPGHF 467          
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GH39_ARATH (Putative indole-3-acetic acid-amido synthetase GH3.9 OS=Arabidopsis thaliana GN=GH3.9 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.584e-58
Identity = 105/220 (47.73%), Postives = 157/220 (71.36%), Query Frame = 3
Query:    3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLP--QEPAHSFGLTSSDPQP----VDLVDVEVGKEYQLVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIESDKTDEAKLQNAIDNASRLLREFNTNVGEYTICANTKTIPGHYVIYWELLIKDSANSPNNEVLNQCCLA 644
            +WP  K+++ +VTG+MAQYIP L+++S GK+P+ C MYASSE YFG+N+ P+ +PS+V +T++PNM YFEF+P  +    SF L   +  P    VDLV+V++G+ Y+LV+TT+AGLYRYR+GD+L+V GF+N APQF F+ R+NV+LSI+ DKT+E  L  +I  A + L   N  + EYT  A+T ++PGHYV++WE+           +++ +CC+A
Sbjct:  289 LWPKAKFIEAVVTGSMAQYIPALEFFSQGKIPLVCPMYASSETYFGVNVEPLSKPSDVVFTLLPNMCYFEFIPLGKNGTLSFDLDDDEQVPCDKVVDLVNVKLGRYYELVVTTFAGLYRYRIGDVLQVAGFYNGAPQFRFICRRNVVLSIDLDKTNEEDLHRSITLAKKKLGS-NAFLAEYTSYADTSSVPGHYVLFWEI-----QGHLEPKLMEECCVA 502          
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GH37_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.7 OS=Oryza sativa subsp. japonica GN=GH3.7 PE=2 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 5.647e-48
Identity = 101/226 (44.69%), Postives = 142/226 (62.83%), Query Frame = 3
Query:    3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLP---QEPAHSFGLTSSDP-----QPVDLVDVEVGKEYQLVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIESDKTDEAKLQNAIDNASRL-LREFNTNVGEYTICANTKTIPGHYVIYWELLIKDSAN---SPNNEVLNQCCLA 644
            +WP  +Y+  IVTG+M+QYIP L+ Y GG LP+   +YAS+EC  G+NL P+  PS VSY ++PN+AYFEFL    +      G T  D      + VDLVDV+VG+ Y+L++TT+AGLYRYRVGD+  V+GF+N+ P FHF  R +V+LSI+ +K  E  L NAI    +  LR     +   T  A+  T+PGHY+++WEL     +N     +   + +CCLA
Sbjct:  309 LWPRARYIRTIVTGSMSQYIPILEVYGGG-LPLVSPIYASTECAAGINLRPLDPPSHVSYALLPNIAYFEFLEVMDENGEKVQGTTRLDDNLGEVKVVDLVDVKVGRCYELIVTTFAGLYRYRVGDLFTVSGFYNATPLFHFSGRHDVILSIDYEKISEEDLLNAIAETDKFHLRPLGYMLVGSTAYADISTLPGHYILFWELTNTCDSNVAIDIDQTAMEKCCLA 533          
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GH312_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.12 OS=Oryza sativa subsp. japonica GN=GH3.12 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 8.438e-44
Identity = 89/232 (38.36%), Postives = 136/232 (58.62%), Query Frame = 3
Query:    3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEP---------------AHSFGLTSSDPQPVDLVDVEVGKEYQLVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIESDKTDEAKLQNAIDNASRLLREFNTN-----VGEYTICANTKTIPGHYVIYWELLIKDSANSPNNEVLNQCC 638
            +WPN +Y+   +TG+M  Y+  L +Y+GG +P+    YASSE   G+N      P  V +T++P+ AYFEF+P +P                 S  + + D  PV L DV VG+ Y++V+TT+ GLYRYR+GD+++V GFH++ P+  FV R++++LSI  DK  E  LQ A+D+A+++L     N     + +YT  A+T + PGHYV++WEL            VL +CC
Sbjct:  300 LWPNARYVQATMTGSMEHYVKKLRHYAGG-VPLVSGNYASSEGVIGINAEQHAPPESVVFTVLPDAAYFEFIPLKPPCTDAAADDDNPAAAGSSCYVDADDANPVGLTDVVVGEHYEVVMTTFTGLYRYRLGDVVKVAGFHHATPKLRFVCRRSLILSINVDKNSEHDLQLAVDSAAKILAGDGENHKQLEIADYTSHADTSSDPGHYVVFWEL--NGGGEEDGGGVLQRCC 528          
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GH35_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.188e-43
Identity = 87/220 (39.55%), Postives = 135/220 (61.36%), Query Frame = 3
Query:    3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLP------QEPAHSFGLTSSDPQPVDLVDVEVGKEYQLVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIESDKTDEAKLQNAIDNASRLLREFNTNVGEYTICANTKTIPGHYVIYWELLIKDSANSPNNEVLNQCCLA 644
            +WPN KY+  I+TG+M  Y+  L +Y+G  LP+    Y +SE + G N++P   P +V+Y ++P + YFEF+P      +E  +S  +   +  PV L +VEVGK Y++VIT +AGLYRYR+GD++++  FHNS P+  F+ R++++LSI  DK  E  LQ A++ AS+ L      V ++T      + PG YVI+WEL     +   ++EVL+ C  A
Sbjct:  287 LWPNAKYVYGIMTGSMEPYLKKLRHYAGN-LPLISADYGASEGWVGSNIDPTVPPEQVTYAVLPQVGYFEFIPLEKPIGEETENSASIHYIESDPVGLTEVEVGKIYEVVITNFAGLYRYRLGDVVKIARFHNSTPELQFICRRSLVLSINIDKNTEKDLQLAVEEASKFLEGEKLEVMDFTSFVERSSDPGRYVIFWEL-----SGDASDEVLSSCANA 500          
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GH36_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.6 OS=Oryza sativa subsp. japonica GN=GH3.6 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.344e-32
Identity = 59/137 (43.07%), Postives = 91/137 (66.42%), Query Frame = 3
Query:    3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPAHSFGLTSSDPQPVDLVDVEVGKEYQLVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRR 413
            +WP+ +Y+  + TG M QY P + +++G  LP+  T Y +SEC  G+NL     P E +Y ++P  AYFEF+P +   + G  ++  +PVD+  VE GK Y+LV TT+ GLYRY+VGD++++ GFH+S+P+  FV R
Sbjct:  133 LWPDARYISCVTTGTMEQYFPAIKHFAGEALPVLGTDYLASECAIGINLERTSPPEETTYVLLPRAAYFEFIPFD-MDAAGRGAAAAEPVDIAGVEAGKTYELVATTFRGLYRYKVGDVVKIAGFHHSSPRLQFVTR 268          
The following BLAST results are available for this feature:
BLAST of FC875343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
GH39_ORYSJ6.200e-7163.01Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH31_ORYSJ9.898e-6957.48Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH317_ARATH1.024e-6555.02Indole-3-acetic acid-amido synthetase GH3.17 OS=Ar... [more]
GH311_ORYSJ1.932e-6452.47Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH310_ORYSJ5.816e-6163.49Putative indole-3-acetic acid-amido synthetase GH3... [more]
GH39_ARATH1.584e-5847.73Putative indole-3-acetic acid-amido synthetase GH3... [more]
GH37_ORYSJ5.647e-4844.69Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH312_ORYSJ8.438e-4438.36Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH35_ORYSJ4.188e-4339.55Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH36_ORYSJ4.344e-3243.07Probable indole-3-acetic acid-amido synthetase GH3... [more]

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Properties
Property NameValue
Genbank descriptionC31402H05EF CTVClemen1 Citrus clementina cDNA clone C31402H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875343 ID=FC875343; Name=FC875343; organism=Citrus clementina; type=EST; length=644bp
GAATCTGGCCTAACACAAAGTATCTTGATGTCATTGTTACTGGAGCAATG
GCACAGTATATTCCTACGCTTGATTATTACAGCGGAGGCAAATTGCCAAT
GGCATGCACCATGTATGCTTCATCAGAATGTTACTTTGGGTTAAATCTTA
ACCCCATATGCAGGCCATCAGAGGTTTCTTATACAATCATGCCAAACATG
GCCTACTTTGAGTTTCTTCCCCAAGAGCCTGCACACTCATTCGGGTTGAC
CAGCAGCGACCCGCAGCCTGTTGACCTTGTCGATGTCGAAGTGGGCAAAG
AATACCAGCTTGTGATCACAACTTACGCCGGCTTGTACAGATACCGAGTC
GGGGACATCCTCCGAGTGACCGGGTTCCACAACTCAGCCCCGCAGTTCCA
TTTCGTCAGAAGAAAGAACGTCTTACTCAGCATTGAATCCGACAAAACCG
ACGAGGCCAAACTGCAGAACGCCATCGACAACGCGTCCCGACTGCTCCGA
GAATTCAACACCAACGTCGGGGAATACACAATCTGTGCGAATACAAAGAC
AATCCCAGGTCACTACGTGATATACTGGGAACTTCTAATTAAGGACTCTG
CCAATTCTCCGAACAACGAAGTCCTGAACCAGTGCTGCTTGGCC
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