FC875343
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GH313_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.13 OS=Oryza sativa subsp. japonica GN=GH3.13 PE=2 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 6.935e-30 Identity = 64/110 (58.18%), Postives = 80/110 (72.73%), Query Frame = 3 Query: 3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPAHSFGLTSSDPQPVDLVDVEVGKEYQLVITTYAG 332 +WP TKY+DVIVTG+MAQYIP L++Y GG LP+ TMYASSE YFG+NL P+ P EV YT++PNM Y+EF+ E G D + VDLV VEVG Y+LV+TT+ G Sbjct: 335 LWPRTKYIDVIVTGSMAQYIPLLEFYGGG-LPLVSTMYASSESYFGINLRPLDPPEEVVYTLLPNMCYYEFIKVE-KDGDGEKVRDGEVVDLVGVEVGAYYELVVTTFTG 442
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GH33_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.3 OS=Oryza sativa subsp. japonica GN=GH3.3 PE=2 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 7.193e-19 Identity = 43/110 (39.09%), Postives = 72/110 (65.45%), Query Frame = 3 Query: 3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPAHSFGLTSSDPQPVDLVDVEVGKEYQLVITTYAG 332 +WPN +Y+ I+TG+M Y+ L +Y+GG LP+ Y +SE + G N+ P P ++T++P++AYFEF+P +P G ++ +PV L +V G+ Y++V+TT+AG Sbjct: 300 LWPNARYVYGIMTGSMEHYVKKLRHYAGG-LPLVAAEYGASEGWVGANVEPGTPPERATFTVLPDIAYFEFIPLKPVAGDG-GYAEAEPVGLTEVAAGELYEVVMTTFAG 407
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GHDC_HUMAN (GH3 domain-containing protein OS=Homo sapiens GN=GHDC PE=1 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 6.521e-12 Identity = 56/217 (25.81%), Postives = 92/217 (42.40%), Query Frame = 3 Query: 3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPAHSFGLTSSDPQPVDLVDVEVGKEYQLVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIESDKTDEAKLQNAIDNA------SRLLREFNTNVGEYTICANTKTIPGHYVIYWELLIKDSANSPNNEVLNQC 635 +WP + + + G A+ + L L YA+S GLNL P Y + P + E LP + G + L + + GKEY+LV+T A L R R+GD++RV G +N P F+ R + LS+ + E A+ A ++LL + E +I ++ HY ++ L + + N + L+ C Sbjct: 255 LWPKLQVVVTLDAGGQAEAVAALGALWCQGLAFFSPAYAASGGVLGLNLQP--EQPHGLYLLPPGAPFIELLPVKE----GTQEEAASTLLLAEAQQGKEYELVLTDRASLTRCRLGDVVRVVGAYNQCPVVRFICRLDQTLSVRGEDIGEDLFSEALGRAVGQWAGAKLL---DHGCVESSILDSSAGSAPHYEVFVALRGLRNLSEENRDKLDHC 462
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GHDC_MOUSE (GH3 domain-containing protein OS=Mus musculus GN=Ghdc PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.516e-12 Identity = 57/224 (25.45%), Postives = 96/224 (42.86%), Query Frame = 3 Query: 3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPAHSFGLTSSDPQPVDLVDVEVGKEYQLVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIESDKTDEAKLQNAIDNASRLLREFNTNVGEYT-------ICANTKTIPG------HYVIYWELLIKDSANSPNNEVLNQC 635 +WP + + + +G A+ + L L YA+S LNL P RP + SY + P + + E LP + G + L D + KEY+LV+T + L R R+GD+++V G +N P F R L++ + TDE A+ A VG++ +C ++ + HY ++ EL + + N + L+ C Sbjct: 256 LWPKLQVVVTLDSGGQAEAVAALRVLWCQGLAFFSPAYAASGGVVALNLWPE-RP-QGSYLLPPGVPFIELLPIKE----GTQEEAASTLLLTDAQREKEYELVLTNHTSLTRCRLGDVVQVVGTYNQCPVVRFTCRLGQTLNVRGEVTDETVFSVALAQA----------VGQWPGAKLLDHVCVESRVLDSCEGSAPHYEVFVELRGLRNLSEENRDKLDNC 463 The following BLAST results are available for this feature:
BLAST of FC875343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC875343 ID=FC875343; Name=FC875343; organism=Citrus clementina; type=EST; length=644bpback to top |