FC875348

Overview
NameFC875348
Unique NameFC875348
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3589 contig Ccv1_Contig3589:1..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_PYRIL (30S ribosomal protein S7P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps7p PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.803e-40
Identity = 89/176 (50.57%), Postives = 113/176 (64.20%), Query Frame = 1
Query:  151 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIK 678
            V LF +W+FE+V V D  L  YI ++       +PHT GRY   RF KA+ PIVERL N +M  GRN GKK  A  IVK A +II+  T QNPIQV+VDA+IN  PRE+ TRI   G+    +VD+SP RR++ A+  +T GAR  +F N K I ECLADE+I AA     SYA++
Sbjct:   40 VLLFGKWSFENVVVKDPGLRRYICLKPV----LLPHTEGRYQKHRFGKARIPIVERLINLMMRPGRNTGKKHKAYNIVKRAFDIIYYKTGQNPIQVLVDAIINVAPREEVTRIIMGGIAYTVSVDVSPQRRLDLALRWITEGARTCSFNNPKPIEECLADEIIAAASNDPRSYAVR 211          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_SULSO (30S ribosomal protein S7P OS=Sulfolobus solfataricus GN=rps7p PE=3 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 4.781e-40
Identity = 88/177 (49.72%), Postives = 119/177 (67.23%), Query Frame = 1
Query:  148 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIK 678
            D+K+F +W  + V++ D SL  YI +       Y+PHT GR+  +RF KA+ PIVERL N +M  GRN GKK +A  IVK A +II+L T QNPIQV+V A+ NS PRE+ TRI   G+V   AVD+SP RR++ A+  + TGA++++F N K I E LA+E+I AA   S S+AIK
Sbjct:    9 DIKVFGKWDTK-VEIRDPSLKKYISLMPV----YLPHTGGRHEHRRFGKAKVPIVERLINQIMRPGRNKGKKHLAYNIVKLAFDIIYLKTGQNPIQVLVRAIENSAPREEVTRIMYGGIVYYVAVDVSPQRRIDLALRHIATGAKDASFNNPKPIEEVLAEEIIAAANNDSKSFAIK 180          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_SULTO (30S ribosomal protein S7P OS=Sulfolobus tokodaii GN=rps7p PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.065e-39
Identity = 88/177 (49.72%), Postives = 119/177 (67.23%), Query Frame = 1
Query:  148 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIK 678
            D+K+F +W  + V++ D SL  YIG+       Y+PHT GR+  +RF KA+ PIVERL N++M  GRN GKK++A  IVK A +II L T QNPIQV+V A+ NS PRE+ TRI   G+V   AVD++P RRV+ A+  L  GA+E++F N K I E LA+E+I AA     S+AI+
Sbjct:   10 DLKVFGKWDTK-VEIRDPSLKKYIGLMPV----YLPHTGGRHEHRRFGKAKLPIVERLINNVMRPGRNKGKKMLAYNIVKTAFDIIALKTGQNPIQVLVKAIENSAPREEVTRIMYGGIVYYVAVDVAPQRRVDLALRHLVMGAKEASFNNPKPIEEALAEEIIAAASNDPKSFAIR 181          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_METJA (30S ribosomal protein S7P OS=Methanocaldococcus jannaschii GN=rps7p PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.373e-39
Identity = 87/178 (48.88%), Postives = 120/178 (67.42%), Query Frame = 1
Query:  148 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS-SNSYAIK 678
            ++K+F RW+ +DV V D  L +YI +       YVPHTAGRY+ ++F KA+  IVERL N +M    N GKKL A++IV++A EII   T QNPIQV+VDA+ N+GPRED TRI   G+V  Q+VD S LRR++ A+  +  GA  +A ++ K I E LA+E+I AA+G    SYA++
Sbjct:    5 EIKVFGRWSTKDVVVKDPGLRNYINLTPI----YVPHTAGRYTKRQFEKAKMNIVERLVNKVMRREENTGKKLKALKIVENAFEIIEKRTKQNPIQVLVDAIENAGPREDTTRISYGGIVYLQSVDCSSLRRIDVALRNIALGAYMAAHKSKKPIEEALAEEIIAAARGDMQKSYAVR 178          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_THENV (30S ribosomal protein S7P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps7p PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.099e-39
Identity = 85/174 (48.85%), Postives = 112/174 (64.37%), Query Frame = 1
Query:  157 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIK 678
            LF +W+FE+V V D  L  YI ++       +PHT GRY   RF KA+ PIVERL N +M  GRN GKK  A  IVK A +I++  T QNPIQV +DA++N+ PRE+ TRI   G+    +VD+SP RR++ A+  +T GAR  +F N K I ECLADEL+ AA     SYA++
Sbjct:   42 LFGKWSFENVVVRDPGLRRYICLKPV----VLPHTEGRYQNYRFGKARIPIVERLINLMMRPGRNAGKKHKAYNIVKRAFDIVYYKTGQNPIQVFIDAIVNTAPREEITRIIMGGIAYSVSVDVSPQRRLDLALRWITEGARACSFNNPKPIEECLADELVAAAANDPKSYAVR 211          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_DESMO (30S ribosomal protein S7P OS=Desulfurococcus mobilis GN=rps7p PE=3 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.099e-39
Identity = 83/177 (46.89%), Postives = 117/177 (66.10%), Query Frame = 1
Query:  148 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIK 678
            ++KLFN+W+++ ++V D SL  YI ++      Y+PHT GR+  +RF K   PIVERL N +M  GRN GKK +A  IVK A +IIH+ T +NPIQV+V A+ N+ PRE+ TRI   G+    +VD++PLRR++ A+  LT GAR  AF +   I E LA+E++ AA     SYAI+
Sbjct:   13 EIKLFNKWSYDFIEVRDPSLKKYICLKPV----YLPHTGGRHEHRRFGKTHVPIVERLINKVMRPGRNMGKKHLAYHIVKKAFDIIHIKTGENPIQVLVRAIENAAPREETTRIMYGGITYHVSVDVAPLRRIDLALRHLTEGARMKAFHSPIPIEEALAEEIVLAASNDPKSYAIQ 185          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_PYRAE (30S ribosomal protein S7P OS=Pyrobaculum aerophilum GN=rps7p PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.047e-39
Identity = 84/176 (47.73%), Postives = 113/176 (64.20%), Query Frame = 1
Query:  151 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIK 678
            + LF +W++EDV V D  L  YI ++       +PHT GRY   RF KA+ PIVERL N +M  GRN GKK  A  IVK A ++I+  T +NP+QV +DA+IN+ PRE+ TRI   G+    +VD+SP RR++ A+  +T GAR  +F N K I ECLADE+I AA     SYA++
Sbjct:   39 ILLFGKWSYEDVVVRDPGLRRYICLKPV----ILPHTEGRYQNTRFGKARIPIVERLINLMMRPGRNTGKKHKAYNIVKRAFDLIYYKTGKNPLQVFIDAIINTAPREEITRIIMGGIAYSVSVDVSPQRRLDLALRWITEGARACSFNNPKPIEECLADEIIAAAANDPKSYAVR 210          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_METKA (30S ribosomal protein S7P OS=Methanopyrus kandleri GN=rps7p PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.047e-39
Identity = 84/178 (47.19%), Postives = 120/178 (67.42%), Query Frame = 1
Query:  145 YDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIK 678
            Y++K+F +W   +V+V D  L DYI ++      Y+PHT GR++ KRF KA+ PIVERL N +M   +N GKK +A  IVK A +IIH  T +NPIQV+V A+ N+ PRE+ T I   G+   +AVD SP RR++ A+ L+T GA++ AFRN K I ECLA+E+I AA+  +  ++I+
Sbjct:   11 YEMKVFGKWDPTEVEVRDPGLKDYICLKPM----YLPHTGGRHAKKRFAKAEVPIVERLINRVMRTEKNTGKKHLAYNIVKRAFDIIHERTGENPIQVLVQALENAAPREETTTIIYGGISYHEAVDSSPQRRLDIALRLITEGAQQRAFRNPKPIEECLAEEIIAAARYDTECHSIR 184          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_DESK1 (30S ribosomal protein S7P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps7p PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.016e-39
Identity = 83/177 (46.89%), Postives = 119/177 (67.23%), Query Frame = 1
Query:  148 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIK 678
            ++KLFN+W+++ ++V D SL  YI ++      Y+PH+ GR+  KRF KA  PIVERL N++M  GRN GKK +A  IVK + E+I+L T +NP+QV+V A+ N+ PRE+ TRI   G+    +VDI+PLRR++ A+  LT GAR  AF N  +I E LA+E+  AA     SYA++
Sbjct:   13 EIKLFNKWSYDFIEVRDPSLKKYICLKPV----YLPHSGGRHEHKRFGKALVPIVERLINNVMRPGRNMGKKHLAYNIVKKSFELIYLKTGENPLQVLVRAIENAAPREETTRIMYGGITYHVSVDIAPLRRIDLALRHLTEGARLKAFHNPISIEEALAEEIALAASNDPKSYAVQ 185          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_METMP (30S ribosomal protein S7P OS=Methanococcus maripaludis GN=rps7p PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.426e-38
Identity = 88/178 (49.44%), Postives = 114/178 (64.04%), Query Frame = 1
Query:  148 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS-SNSYAIK 678
            ++KLF +W  E V V D SL  YI V        VPHTAGR S K F K++  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA ESA +N KT+A+CLADELI A+K     S+A+K
Sbjct:    2 EIKLFGKWDSETVAVKDPSLKSYISVAPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQNNTGKKHETLAIVEEALTIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASESAHKNKKTVAQCLADELIFASKADMQKSFAVK 175          
The following BLAST results are available for this feature:
BLAST of FC875348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_PYRIL2.803e-4050.5730S ribosomal protein S7P OS=Pyrobaculum islandicu... [more]
RS7_SULSO4.781e-4049.7230S ribosomal protein S7P OS=Sulfolobus solfataric... [more]
RS7_SULTO1.065e-3949.7230S ribosomal protein S7P OS=Sulfolobus tokodaii G... [more]
RS7_METJA2.373e-3948.8830S ribosomal protein S7P OS=Methanocaldococcus ja... [more]
RS7_THENV3.099e-3948.8530S ribosomal protein S7P OS=Thermoproteus neutrop... [more]
RS7_DESMO3.099e-3946.8930S ribosomal protein S7P OS=Desulfurococcus mobil... [more]
RS7_PYRAE4.047e-3947.7330S ribosomal protein S7P OS=Pyrobaculum aerophilu... [more]
RS7_METKA4.047e-3947.1930S ribosomal protein S7P OS=Methanopyrus kandleri... [more]
RS7_DESK19.016e-3946.8930S ribosomal protein S7P OS=Desulfurococcus kamch... [more]
RS7_METMP3.426e-3849.4430S ribosomal protein S7P OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionC31402H10EF CTVClemen1 Citrus clementina cDNA clone C31402H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875348 ID=FC875348; Name=FC875348; organism=Citrus clementina; type=EST; length=679bp
GATCGTACCACTCAGGGAGAACTCAGCGAGCGGCAGCCGATTCTTATTAT
TTTATCTCTCTCGCTCTCTCACTCTCTCAAAGCTCTTCAGGTAAGAATGG
CGACTGCTGTAGTGGCACAATCTCAAGACCCATCACAGCCTCACTACGAT
GTGAAGCTCTTCAATAGGTGGACTTTCGAGGATGTTCAGGTCAATGACAT
CTCGTTGAGTGATTATATTGGCGTGCAAGCGGCCAAGCACGCTACTTATG
TGCCTCACACTGCTGGGAGGTACTCAGTTAAGCGTTTCCGGAAGGCCCAA
TGTCCCATTGTTGAGAGGCTTACGAACTCTCTTATGATGCACGGTCGTAA
CAACGGCAAGAAATTGATGGCCGTCAGGATTGTTAAGCATGCCATGGAGA
TCATTCACCTTTTGACTGACCAGAACCCAATTCAAGTCATTGTTGACGCT
GTCATCAACAGTGGTCCAAGGGAAGATGCTACCCGTATTGGATCTGCTGG
TGTTGTTAGGCGTCAGGCTGTGGATATTTCCCCACTGCGCCGTGTGAATC
AAGCGATCTATCTACTCACCACTGGTGCTCGTGAATCTGCTTTTCGTAAC
ATCAAGACTATTGCCGAATGCTTGGCCGATGAACTCATTAATGCTGCCAA
GGGTTCATCTAACAGCTATGCGATCAAGA
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