FC875348

Overview
NameFC875348
Unique NameFC875348
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3589 contig Ccv1_Contig3589:1..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_SULAC (30S ribosomal protein S7P OS=Sulfolobus acidocaldarius GN=rps7p PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.969e-38
Identity = 86/177 (48.59%), Postives = 118/177 (66.67%), Query Frame = 1
Query:  148 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIK 678
            +VK+F +W  + V+V D SL  YI + +     Y+PHT GR+  +RF K++ PIVERL N+LM  GRN GKK++A  IVK   +II + T QNPIQV+V A+ N+ PRE+ TRI   G+V   AVD++P RRV+ A+  L TGA E++F N K I E LA+E+I AA   + S AI+
Sbjct:   11 NVKVFGKWDTK-VEVRDPSLKKYIDLMSI----YLPHTGGRHEHRRFGKSRIPIVERLINNLMRPGRNKGKKMLAYNIVKTTFDIIAVKTGQNPIQVLVRAIENAAPREEVTRIMYGGIVYYVAVDVAPQRRVDLALRHLVTGASEASFNNPKPIEEALAEEIIAAANNDNKSVAIR 182          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_METM5 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps7p PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.900e-37
Identity = 85/178 (47.75%), Postives = 114/178 (64.04%), Query Frame = 1
Query:  148 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS-SNSYAIK 678
            ++KLF +W  E V V D SL  YI V        VPHTAGR + K F KA+  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA +SA +N KT+A+CLADE+I A+K     S+A++
Sbjct:    2 EIKLFGKWDSETVTVKDPSLKSYISVAPV----LVPHTAGRNTKKSFDKAKMNIVERLANKLMANQNNTGKKHETLAIVEEALAIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASDSAHKNKKTVAQCLADEIIFASKADMQKSFAVR 175          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_METM7 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps7p PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.788e-37
Identity = 84/178 (47.19%), Postives = 114/178 (64.04%), Query Frame = 1
Query:  148 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS-SNSYAIK 678
            ++KLF +W  E V V D SL  Y+ V        VPHTAGR S K F K++  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA +SA +N KT+A+CLADE+I A+K     S+A++
Sbjct:    2 EIKLFGKWDSETVTVKDPSLKSYVSVAPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQENTGKKHETLAIVEEALTIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASQSAHKNKKTVAQCLADEIIFASKADMQKSFAVR 175          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_METM6 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps7p PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.788e-37
Identity = 84/178 (47.19%), Postives = 114/178 (64.04%), Query Frame = 1
Query:  148 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS-SNSYAIK 678
            ++KLF +W  E V V D SL  Y+ V        VPHTAGR S K F K++  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA +SA +N KT+A+CLADE+I A+K     S+A++
Sbjct:    2 EIKLFGKWDSETVTVKDPSLKSYVSVTPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQNNTGKKHETLAIVEEALTIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASQSAHKNKKTVAQCLADEIIFASKADMQKSFAVR 175          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_METST (30S ribosomal protein S7P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps7p PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.592e-35
Identity = 79/175 (45.14%), Postives = 117/175 (66.86%), Query Frame = 1
Query:  154 KLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIK 678
            KLF++W   +V V D+ L +Y+ +        VPHT GR+  ++F K++  IVERL N +M   RN+GKK  A  IV+ A+EII+  T QNP+QV+V AV N+ PRE+ TRI   G+  + AVDI+P RRV+ ++  +T GA +SAF+N K+ A+CLADE++ A+   S S+A++
Sbjct:    4 KLFDKWDVTEVTVEDMGLQNYVCLDEI----VVPHTMGRHVKRQFAKSKVSIVERLMNKIMRTERNSGKKNKAYSIVEDALEIINNKTKQNPVQVLVKAVENTAPREETTRIKYGGIGYQIAVDIAPQRRVDLSLGFITKGAMQSAFKNKKSAAQCLADEILLASDEDSRSFAVQ 174          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_METTH (30S ribosomal protein S7P OS=Methanobacterium thermoautotrophicum GN=rps7p PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.715e-35
Identity = 77/174 (44.25%), Postives = 120/174 (68.97%), Query Frame = 1
Query:  157 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIK 678
            +F++W  ++V+V D+ L+ YI + +      VPHT GR+  ++F K++  IVERL N +M   RN+GKK  A +IV+ A EII+  T +NP+Q++V AV N+ PRE+ TRI   G+  + AVDISP RRV+ ++  +T GA ++AF+N K+I ECLA+E++ AA+  + S+AI+
Sbjct:    4 VFDKWELDEVKVEDMGLAKYICLDSI----LVPHTMGRHVKRQFAKSKVSIVERLINKVMRTERNSGKKNKAYKIVQEAFEIINRRTKENPVQILVKAVENTSPREETTRIKYGGIGYQVAVDISPQRRVDLSLGFITRGAMQAAFKNKKSIEECLANEIMLAAEYDTRSFAIQ 173          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_ARCFU (30S ribosomal protein S7P OS=Archaeoglobus fulgidus GN=rps7p PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.048e-35
Identity = 78/176 (44.32%), Postives = 115/176 (65.34%), Query Frame = 1
Query:  148 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAI 675
            ++ +F ++   +VQ++D +L  YI ++      YVPH  GR++   F K +  IVERL N +M  G N GKK++A  IVK A EII   T +NPIQV+VDA+IN+GPRE+  R+   G+   +AVD S  RRV+ A+  +  GAR +AF++ ++IA+CLADE+I AA   S S+A+
Sbjct:    9 ELLVFGKYDPSEVQISDPALESYICLEPK----YVPHNHGRHANVPFAKQKVFIVERLINKVMRKGHNTGKKILAYNIVKEAFEIIEKKTKKNPIQVLVDAIINAGPREEVVRLKYGGIAVPKAVDTSSSRRVDIALRNIAEGARRAAFKSKRSIAQCLADEIIAAANNESRSFAV 180          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_CALMQ (30S ribosomal protein S7P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps7p PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 7.899e-35
Identity = 75/176 (42.61%), Postives = 109/176 (61.93%), Query Frame = 1
Query:  151 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIK 678
            + LF +W   DV + D  L  Y+ ++       +PHT G+Y  ++F KA  PI+ER+ N LM  GRN GKK  A +I+K A +II++ T +NP+QV VDAV+N  PRE+ TR+   G+    +VD+ P RR++ AI  +  GAR  +F N + I ECLA+E+I AA     SYA++
Sbjct:   40 ILLFGKWNVNDVVIRDPGLRRYMCLKPM----LLPHTEGKYQNRKFGKAMIPIIERMMNQLMKPGRNAGKKQKAYKILKTAFDIIYVATGKNPVQVFVDAVVNVAPREEITRVIYGGIAYPVSVDVGPTRRLDLAIRWIAEGARACSFNNPRPIEECLANEIIAAANNDPASYALR 211          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_META3 (30S ribosomal protein S7P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps7p PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.032e-34
Identity = 76/178 (42.70%), Postives = 117/178 (65.73%), Query Frame = 1
Query:  148 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS-SNSYAIK 678
            ++KLFN+W   ++ V D SL  YI ++      +VPHT+GR S + F KA+  IVERL N+LM   +N G+K + + IV+ A EII   T++NP++V+V+A+ N GPRE+ TRI   G+   Q+VD+SP RR++ A+  +  G   SA +N K+ A+CLADE++ A+K     S+A++
Sbjct:    2 EIKLFNKWDTTEIVVKDPSLRHYINLEPI----FVPHTSGRNSGRMFEKAKMNIVERLVNNLMRAEQNTGQKQVTLSIVEEAFEIIEKRTNENPVKVLVEALENGGPREETTRISYGGIAFLQSVDVSPSRRLDTALRNIAIGTLNSAHKNKKSAAQCLADEIMFASKADMQRSFAVR 175          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_KORCO (30S ribosomal protein S7P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps7p PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.347e-34
Identity = 85/195 (43.59%), Postives = 121/195 (62.05%), Query Frame = 1
Query:  133 SQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLM------------MHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSN-SYAIK 678
            S P   +KLF RW+++D+++ + +L + I ++      Y+PHT GR+  K+F K + PIVERL N LM            ++ +N GKKL A+R VK+A EII L T +NPIQV +DA+ NS  RE+ TRI   GV    AVD SP R V+ AI  +  GA   AFR+ +++AE LA+E+I AA+   N S+AI+
Sbjct:    5 SNPETQIKLFGRWSYDDLRIENAALKNVISLKPV----YLPHTGGRHEHKKFGKLEIPIVERLVNRLMGQAMNSGSRKDHVNSKNQGKKLKAMRTVKYAFEIIELRTGKNPIQVFLDAIENSIIREEVTRIMYGGVSYFHAVDTSPSRMVDLAIRHIAQGAAMKAFRSPRSLAEALAEEIIAAAEYDRNRSFAIR 195          
The following BLAST results are available for this feature:
BLAST of FC875348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_SULAC9.969e-3848.5930S ribosomal protein S7P OS=Sulfolobus acidocalda... [more]
RS7_METM52.900e-3747.7530S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METM73.788e-3747.1930S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METM63.788e-3747.1930S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METST1.592e-3545.1430S ribosomal protein S7P OS=Methanosphaera stadtm... [more]
RS7_METTH2.715e-3544.2530S ribosomal protein S7P OS=Methanobacterium ther... [more]
RS7_ARCFU6.048e-3544.3230S ribosomal protein S7P OS=Archaeoglobus fulgidu... [more]
RS7_CALMQ7.899e-3542.6130S ribosomal protein S7P OS=Caldivirga maquilinge... [more]
RS7_META31.032e-3442.7030S ribosomal protein S7P OS=Methanococcus aeolicu... [more]
RS7_KORCO1.347e-3443.5930S ribosomal protein S7P OS=Korarchaeum cryptofil... [more]

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Properties
Property NameValue
Genbank descriptionC31402H10EF CTVClemen1 Citrus clementina cDNA clone C31402H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875348 ID=FC875348; Name=FC875348; organism=Citrus clementina; type=EST; length=679bp
GATCGTACCACTCAGGGAGAACTCAGCGAGCGGCAGCCGATTCTTATTAT
TTTATCTCTCTCGCTCTCTCACTCTCTCAAAGCTCTTCAGGTAAGAATGG
CGACTGCTGTAGTGGCACAATCTCAAGACCCATCACAGCCTCACTACGAT
GTGAAGCTCTTCAATAGGTGGACTTTCGAGGATGTTCAGGTCAATGACAT
CTCGTTGAGTGATTATATTGGCGTGCAAGCGGCCAAGCACGCTACTTATG
TGCCTCACACTGCTGGGAGGTACTCAGTTAAGCGTTTCCGGAAGGCCCAA
TGTCCCATTGTTGAGAGGCTTACGAACTCTCTTATGATGCACGGTCGTAA
CAACGGCAAGAAATTGATGGCCGTCAGGATTGTTAAGCATGCCATGGAGA
TCATTCACCTTTTGACTGACCAGAACCCAATTCAAGTCATTGTTGACGCT
GTCATCAACAGTGGTCCAAGGGAAGATGCTACCCGTATTGGATCTGCTGG
TGTTGTTAGGCGTCAGGCTGTGGATATTTCCCCACTGCGCCGTGTGAATC
AAGCGATCTATCTACTCACCACTGGTGCTCGTGAATCTGCTTTTCGTAAC
ATCAAGACTATTGCCGAATGCTTGGCCGATGAACTCATTAATGCTGCCAA
GGGTTCATCTAACAGCTATGCGATCAAGA
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