FC875348

Overview
NameFC875348
Unique NameFC875348
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3589 contig Ccv1_Contig3589:1..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_THEGJ (30S ribosomal protein S7P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps7p PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.057e-31
Identity = 79/191 (41.36%), Postives = 108/191 (56.54%), Query Frame = 1
Query:  148 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYA 672
            ++K+F RW+ EDV VND SL  YI ++       +PH+ GR++ K F KAQ  IVERL N +M  G ++                 KK+ A  +VK A  II   T QNPIQV++ A+ NS PRED T I   G+    AVD+SPLRR++ A+  +  GA    +RN  T A+ LA+E+I AA     S+A
Sbjct:   14 ELKVFGRWSVEDVTVNDPSLRPYIALEPR----ILPHSHGRHAKKPFGKAQVHIVERLINKVMRSGASHYKAGGHFMRREHRSIMSKKMKAYEVVKEAFMIIERRTKQNPIQVLIRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDVALKNIALGASIKCYRNKTTYAQALAEEIIAAANRDPKSFA 200          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_CENSY (30S ribosomal protein S7P OS=Cenarchaeum symbiosum GN=rps7p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.180e-30
Identity = 78/183 (42.62%), Postives = 111/183 (60.66%), Query Frame = 1
Query:  157 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMH---------GRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIK 678
            LF +W   D++V D  L   I ++       +P+T GR ++KRF KA   IVERL N  MMH         GR  GKK+ ++  VK A EII+L T +NP++V+V AV NS P ED TRI   G V   +VD+SPLRRV+ A+  +  G +E+AFR  K++ E LA+ LI AA  ++++ ++K
Sbjct:    9 LFRKWDLSDIEVVDPGLKTAISLRKMT----LPYTYGRSALKRFNKADANIVERLANK-MMHFGKKYAKNTGRMAGKKMGSINTVKTAFEIINLKTGRNPVEVLVRAVENSAPNEDTTRIVYGGTVYHVSVDVSPLRRVDLALRFIADGVKEAAFRKPKSLEEFLAEHLILAANNTTDAPSVK 186          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_THEVO (30S ribosomal protein S7P OS=Thermoplasma volcanium GN=rps7p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.542e-30
Identity = 70/173 (40.46%), Postives = 111/173 (64.16%), Query Frame = 1
Query:  157 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAI 675
            LF+++    V+V+D  +  YI V++A +     HT GR+S     K    +VERL N LM   +  GKK  A +I K A +II   T QNP+Q++++A+ N+GPRE+ TR+   G+   ++VD+SP RRV++A+  + TGA  ++F++ K+I  CLADE++ AAK  ++S+AI
Sbjct:    2 LFDKYDVNSVEVHDPGMVKYINVKSALNL----HTGGRFSSYYAGKINMNVVERLINKLMRTEKWTGKKYSAYKITKDAFDIIADKTKQNPLQILINAIENAGPREEVTRLKYGGIAVPKSVDVSPSRRVDEALRNIATGATNASFKSKKSIVNCLADEIMLAAKNDASSFAI 170          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_THEON (30S ribosomal protein S7P OS=Thermococcus onnurineus (strain NA1) GN=rps7p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.013e-30
Identity = 78/191 (40.84%), Postives = 107/191 (56.02%), Query Frame = 1
Query:  148 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYA 672
            ++K+  RW+ EDV VND SL  YI ++       +PH+ GR++ K F KAQ  IVERL N +M  G ++                GKK+ A  +VK A  II   T QNPIQV + A+ NS PRED T I   G+    AVD+SPLRR++ A+  +  GA    +RN  + A+ LA+E+I AA     S+A
Sbjct:   14 ELKVMGRWSVEDVVVNDPSLRPYINLEPR----ILPHSHGRHAKKPFGKAQVHIVERLINKVMRSGASSHKVGGHFMRREHRSLMGKKMKAYEVVKEAFMIIERRTKQNPIQVFIRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDIALKNIALGASAKCYRNKTSYAQALAEEIIAAANKDPKSFA 200          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_PYRFU (30S ribosomal protein S7P OS=Pyrococcus furiosus GN=rps7p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.013e-30
Identity = 79/194 (40.72%), Postives = 109/194 (56.19%), Query Frame = 1
Query:  139 PHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYA 672
            PH ++K+  RW+ EDV+V D SL  YI ++       +PHT GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISP+RR++ A+  +  GA    +RN  + AE LA+E+I AA     SYA
Sbjct:   12 PH-EIKVMGRWSTEDVEVRDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEQRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRNKMSFAEALAEEIILAANKDPKSYA 200          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_PYRKO (30S ribosomal protein S7P OS=Pyrococcus kodakaraensis GN=rps7p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.629e-30
Identity = 79/191 (41.36%), Postives = 105/191 (54.97%), Query Frame = 1
Query:  148 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYA 672
            +VK+  RW+ EDV V D SL  YI + A      +PH+ GRY+ K F KA   IVERL N +M  G ++                 KK+ A  +VK A  II   T QNPIQV+V A+ NS PRED T I   G+    +VD+SPLRR++ A+  +  GA    +RN  T A+ LA+E+I AA     S+A
Sbjct:   14 EVKVMGRWSVEDVTVEDPSLKPYINLDAR----ILPHSHGRYAKKPFGKANVHIVERLINKVMRSGASHYKAGGHFMRREHRSIMSKKMKAYEVVKEAFMIIERRTKQNPIQVLVKAIENSAPREDTTTIAFGGIRYHMSVDVSPLRRLDIALKNIALGASIKCYRNKTTYAQALAEEIIAAANKDPKSFA 200          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_HALMO (30S ribosomal protein S7P OS=Halococcus morrhuae GN=rps7p PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.434e-30
Identity = 73/192 (38.02%), Postives = 112/192 (58.33%), Query Frame = 1
Query:  115 AQSQDPSQPH-----YDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAI 675
            +++ +P QP         KLF RW    ++ +D S   YI V      T V HT GR++ K+F+K++  IVERL N LM    N GKK  A RIV++A ++I   T+++P+QV+V AV N+ PRE+  R+   G+   QAVD++P RRV+QA+  +  G   ++F++     E LA++L  AA     +YA+
Sbjct:    4 SEAPEPDQPAGAEEATGAKLFERWDVTGIEYDDPSTERYITV------TPVEHTMGRHAGKQFQKSEISIVERLINRLMQTDENTGKKQQATRIVRNAFDLIAERTEESPVQVLVSAVENAAPREETVRLKYGGISVPQAVDVAPQRRVDQALKFIAEGTHSASFKSPTDAHEALAEQLTGAANYDVQTYAV 189          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_THECE (30S ribosomal protein S7P OS=Thermococcus celer GN=rps7p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.485e-30
Identity = 77/191 (40.31%), Postives = 106/191 (55.50%), Query Frame = 1
Query:  148 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYA 672
            ++K+  RW+ EDV VND SL  YI ++A      +PH+ GR++ K F KA   IVERL N +M  G  +                 KK+ A  +VK A  II   T QNPIQV+V A+ NS PRED T I   G+    AVD+SPLRR++ A+  +  GA    +RN  + A+ LA+E+I AA     ++A
Sbjct:   14 ELKVMGRWSVEDVTVNDPSLRPYINLEAR----LLPHSHGRHAKKAFGKANVHIVERLINKVMRSGATSHKAGGHFMRRDDRSLMSKKMKAYEVVKEAFMIIERRTKQNPIQVLVRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDIALKNIALGASAKCYRNKTSYAQALAEEIIAAANADPKTFA 200          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_THEAC (30S ribosomal protein S7P OS=Thermoplasma acidophilum GN=rps7p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.485e-30
Identity = 68/173 (39.31%), Postives = 109/173 (63.01%), Query Frame = 1
Query:  157 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAI 675
            LFN++    V+++D  +  YI V++A +     HT GR+S     K    +VERL N LM   +  GKK  A +I + A +II   T QNP+Q++++A+ N+GPRE+ TR+   G+   ++VD+SP RRV++A+  + TGA  ++F++ K+I  CLADE++ AA+    S+AI
Sbjct:    2 LFNKYDVNAVEIHDPGMVKYINVKSALNL----HTGGRFSSYYAGKINMNVVERLINKLMRSEKWTGKKYSAYKITEEAFQIIAEKTKQNPLQILINAIENAGPREEVTRLKYGGIAVPKSVDVSPSRRVDEALRNIATGATNASFKSKKSIVNCLADEIMAAARNDPTSFAI 170          
BLAST of FC875348 vs. ExPASy Swiss-Prot
Match: RS7_PYRHO (30S ribosomal protein S7P OS=Pyrococcus horikoshii GN=rps7p PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.650e-30
Identity = 79/194 (40.72%), Postives = 108/194 (55.67%), Query Frame = 1
Query:  139 PHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYA 672
            PH ++K+  RW+ EDV+V D SL  YI ++       +PHT GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISPLRR++ A+  +  GA    +R   + AE LA+E+I AA     SYA
Sbjct:   15 PH-EIKVMGRWSTEDVEVKDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYA 203          
The following BLAST results are available for this feature:
BLAST of FC875348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_THEGJ4.057e-3141.3630S ribosomal protein S7P OS=Thermococcus gammatol... [more]
RS7_CENSY1.180e-3042.6230S ribosomal protein S7P OS=Cenarchaeum symbiosum... [more]
RS7_THEVO1.542e-3040.4630S ribosomal protein S7P OS=Thermoplasma volcaniu... [more]
RS7_THEON2.013e-3040.8430S ribosomal protein S7P OS=Thermococcus onnurine... [more]
RS7_PYRFU2.013e-3040.7230S ribosomal protein S7P OS=Pyrococcus furiosus G... [more]
RS7_PYRKO2.629e-3041.3630S ribosomal protein S7P OS=Pyrococcus kodakaraen... [more]
RS7_HALMO3.434e-3038.0230S ribosomal protein S7P OS=Halococcus morrhuae G... [more]
RS7_THECE4.485e-3040.3130S ribosomal protein S7P OS=Thermococcus celer GN... [more]
RS7_THEAC4.485e-3039.3130S ribosomal protein S7P OS=Thermoplasma acidophi... [more]
RS7_PYRHO7.650e-3040.7230S ribosomal protein S7P OS=Pyrococcus horikoshii... [more]

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Properties
Property NameValue
Genbank descriptionC31402H10EF CTVClemen1 Citrus clementina cDNA clone C31402H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875348 ID=FC875348; Name=FC875348; organism=Citrus clementina; type=EST; length=679bp
GATCGTACCACTCAGGGAGAACTCAGCGAGCGGCAGCCGATTCTTATTAT
TTTATCTCTCTCGCTCTCTCACTCTCTCAAAGCTCTTCAGGTAAGAATGG
CGACTGCTGTAGTGGCACAATCTCAAGACCCATCACAGCCTCACTACGAT
GTGAAGCTCTTCAATAGGTGGACTTTCGAGGATGTTCAGGTCAATGACAT
CTCGTTGAGTGATTATATTGGCGTGCAAGCGGCCAAGCACGCTACTTATG
TGCCTCACACTGCTGGGAGGTACTCAGTTAAGCGTTTCCGGAAGGCCCAA
TGTCCCATTGTTGAGAGGCTTACGAACTCTCTTATGATGCACGGTCGTAA
CAACGGCAAGAAATTGATGGCCGTCAGGATTGTTAAGCATGCCATGGAGA
TCATTCACCTTTTGACTGACCAGAACCCAATTCAAGTCATTGTTGACGCT
GTCATCAACAGTGGTCCAAGGGAAGATGCTACCCGTATTGGATCTGCTGG
TGTTGTTAGGCGTCAGGCTGTGGATATTTCCCCACTGCGCCGTGTGAATC
AAGCGATCTATCTACTCACCACTGGTGCTCGTGAATCTGCTTTTCGTAAC
ATCAAGACTATTGCCGAATGCTTGGCCGATGAACTCATTAATGCTGCCAA
GGGTTCATCTAACAGCTATGCGATCAAGA
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