FC875349

Overview
NameFC875349
Unique NameFC875349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875349_ssr49 microsatellite FC875349_ssr49:49..68. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875349_ssr77 microsatellite FC875349_ssr77:77..86. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875349_ssr214 microsatellite FC875349_ssr214:214..223. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9941 contig Ccv1_Contig9941:109..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875349 vs. ExPASy Swiss-Prot
Match: CSK2B_DANRE (Casein kinase II subunit beta OS=Danio rerio GN=csnk2b PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.730e-23
Identity = 50/75 (66.67%), Postives = 58/75 (77.33%), Query Frame = 1
Query:  496 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLI 720
            WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E          Q++L+E AAEMLYGLI
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLI 83          
BLAST of FC875349 vs. ExPASy Swiss-Prot
Match: CSK2B_CHICK (Casein kinase II subunit beta OS=Gallus gallus GN=CSNK2B PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.730e-23
Identity = 50/75 (66.67%), Postives = 58/75 (77.33%), Query Frame = 1
Query:  496 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLI 720
            WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E          Q++L+E AAEMLYGLI
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLI 83          
BLAST of FC875349 vs. ExPASy Swiss-Prot
Match: CSK2B_BOVIN (Casein kinase II subunit beta OS=Bos taurus GN=CSNK2B PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.730e-23
Identity = 50/75 (66.67%), Postives = 58/75 (77.33%), Query Frame = 1
Query:  496 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLI 720
            WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E          Q++L+E AAEMLYGLI
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLI 83          
BLAST of FC875349 vs. ExPASy Swiss-Prot
Match: CSK2B_SPOFR (Casein kinase II subunit beta OS=Spodoptera frugiperda PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.165e-21
Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:  496 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLI 720
            WISWFC LRGNEFFCEVD+DYI D FNL GL+ QVP+Y  ALD+ILD+E          Q++LVE A+E+LYGLI
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYRQALDMILDLEPDDDLDDNPNQSDLVEQASEILYGLI 83          
BLAST of FC875349 vs. ExPASy Swiss-Prot
Match: CSK2B_DROME (Casein kinase II subunit beta OS=Drosophila melanogaster GN=CkIIbeta PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21
Identity = 47/75 (62.67%), Postives = 56/75 (74.67%), Query Frame = 1
Query:  496 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLI 720
            W++WFC LRGNEFFCEVD+DYIQD FNL GL+ QVP Y  ALD+ILD+E          Q+++ E AAEMLYGLI
Sbjct:    9 WVTWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPNYRQALDMILDLEPEDELEDNPLQSDMTEQAAEMLYGLI 83          
BLAST of FC875349 vs. ExPASy Swiss-Prot
Match: CSK2B_CAEEL (Casein kinase II subunit beta OS=Caenorhabditis elegans GN=kin-10 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.197e-20
Identity = 49/75 (65.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:  496 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLI 720
            WI+WFC LRGNEFFCEVD++YIQD FNL GL+ QVP Y  ALD+ILD+E    E       +LVE AAEMLYGLI
Sbjct:    9 WITWFCGLRGNEFFCEVDEEYIQDRFNLTGLNEQVPKYRQALDMILDLEPDDIE-DNATNTDLVEQAAEMLYGLI 82          
BLAST of FC875349 vs. ExPASy Swiss-Prot
Match: CK2B_DICDI (Casein kinase II subunit beta OS=Dictyostelium discoideum GN=csnk2b PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.508e-18
Identity = 42/75 (56.00%), Postives = 55/75 (73.33%), Query Frame = 1
Query:  496 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLI 720
            WI W+CNL+GNEFF  +D+DYI DDFNL GLS  V +YD AL +ILD  S   +  +E+Q E +E +A++LYGLI
Sbjct:   23 WIPWYCNLKGNEFFATIDEDYINDDFNLTGLSSLVQFYDSALGIILD--SDPDDPLSEDQQEALERSADILYGLI 95          
BLAST of FC875349 vs. ExPASy Swiss-Prot
Match: CSK2B_SCHPO (Casein kinase II subunit beta OS=Schizosaccharomyces pombe GN=ckb1 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.969e-17
Identity = 43/75 (57.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query:  496 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLI 720
            W+ WF  L+GNEFFCEVD+D+IQD FNL GLS +VP+Y  +LDLILDV         EE  + VE++A  LYGLI
Sbjct:   16 WVDWFLGLKGNEFFCEVDEDFIQDRFNLTGLSHEVPHYSQSLDLILDVLDPD---LPEEVQDEVEASARHLYGLI 87          
BLAST of FC875349 vs. ExPASy Swiss-Prot
Match: CSK2C_NEUCR (Casein kinase II subunit beta-2 OS=Neurospora crassa GN=ckb-2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.779e-15
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 1
Query:  496 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLI 720
            W  WF + RGNE+FCE+D+DYI D FNL GL+ +V YY YALDLI DV     +   ++  E +E +A  LYGL+
Sbjct:   16 WRDWFISSRGNEYFCEIDEDYITDRFNLTGLNTEVQYYQYALDLITDVFDLDCD---DDMRETIEKSARHLYGLV 87          
BLAST of FC875349 vs. ExPASy Swiss-Prot
Match: CSK2C_DROME (Casein kinase II subunit beta' OS=Drosophila melanogaster GN=CkIIbeta2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.242e-14
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:  496 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLI 720
            WI WFC  RGNEFFCEVD++YIQD FNL  L   V  Y  AL++ILD+  + G    +     +E++AE LYGLI
Sbjct:    9 WIHWFCKQRGNEFFCEVDEEYIQDKFNLNFLDSNVKNYKCALEVILDL--NPGSASEDPAEPELEASAEKLYGLI 81          
The following BLAST results are available for this feature:
BLAST of FC875349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CSK2B_DANRE4.730e-2366.67Casein kinase II subunit beta OS=Danio rerio GN=cs... [more]
CSK2B_CHICK4.730e-2366.67Casein kinase II subunit beta OS=Gallus gallus GN=... [more]
CSK2B_BOVIN4.730e-2366.67Casein kinase II subunit beta OS=Bos taurus GN=CSN... [more]
CSK2B_SPOFR1.165e-2164.00Casein kinase II subunit beta OS=Spodoptera frugip... [more]
CSK2B_DROME4.427e-2162.67Casein kinase II subunit beta OS=Drosophila melano... [more]
CSK2B_CAEEL2.197e-2065.33Casein kinase II subunit beta OS=Caenorhabditis el... [more]
CK2B_DICDI3.508e-1856.00Casein kinase II subunit beta OS=Dictyostelium dis... [more]
CSK2B_SCHPO2.969e-1757.33Casein kinase II subunit beta OS=Schizosaccharomyc... [more]
CSK2C_NEUCR2.779e-1550.67Casein kinase II subunit beta-2 OS=Neurospora cras... [more]
CSK2C_DROME5.242e-1452.00Casein kinase II subunit beta' OS=Drosophila melan... [more]

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Properties
Property NameValue
Genbank descriptionC31402H11EF CTVClemen1 Citrus clementina cDNA clone C31402H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875349 ID=FC875349; Name=FC875349; organism=Citrus clementina; type=EST; length=739bp
CAATAATAATCTCTAGCAAGAGACAGCATGGGCTGAGCCGCTAAGCCTTA
TATATATATATATATATAAAAAAAAAACACACACACAAACTGCTTCCCAT
CAAAAACCCTAGGCAGGGTTAGTGTGGTAATTTCTCGCGCCATGTGTCGG
TGGTAATCGTGTAGCCTTTAATTAAAAAAAATCGTCATCGGCGAAGGAGG
ATACAAGATGTATAGAGAGAGAGGGACCGGTGGGTCCAAGTCGGAAGTGG
TTGTCGGACCAGTTGATCGGAAGCGGATTAACGATGCATTAGATAAGCAG
CTGGAGAGATCTTCGCCCTCCACTTCGAGAACGACGATCAACGGCAAGGA
TATGTCCGTTCTCTTGGGGAAGCATCCGGCTGATCATCAGCGAGACTCTC
GCTCCGCTTCTCTCTCCAAAAATCATGCTTCTGATGAATCTGAAACAGAC
AGTGAAGAGTCAGATGTCAGTGGTTCTGAGGGAGATGACACATCTTGGAT
CTCATGGTTTTGCAATCTTCGAGGAAATGAATTCTTCTGTGAAGTGGATG
ATGACTATATACAAGATGATTTTAACCTCTGTGGGCTAAGCGGTCAAGTT
CCATATTATGATTATGCACTTGACTTGATTTTGGATGTTGAGTCCTCTCA
TGGTGAAATGTTCACTGAAGAACAAAATGAATTAGTTGAATCTGCAGCAG
AGATGCTTTATGGTCTAATCATGCTCGATACATACTGAC
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