FC875353

Overview
NameFC875353
Unique NameFC875353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8026 contig Ccv1_Contig8026:677..1380. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875353 vs. ExPASy Swiss-Prot
Match: S22A8_PIG (Solute carrier family 22 member 8 OS=Sus scrofa GN=SLC22A8 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 41/155 (26.45%), Postives = 68/155 (43.87%), Query Frame = 3
Query:  204 RTTIXXXXXXFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLS--CLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCP 662
            R T+      F   FAYY++ + + E                     NLY+ + I    ++P   +  + +   GR ++  I+  L+  C+  L  V      L T L    + C+ G+F+   +Y +E+YPT +R TG GA+N   R+G M  P
Sbjct:  326 RVTLCLSLAWFATGFAYYSLAMGVEEFG------------------VNLYVLQLIFGGVDVPAKFITMLSISYLGRHITEGIVLLLAGGCILALIFVPLDLMTLRTVLAVFGKGCLSGSFSCLFLYTSELYPTVIRQTGMGASNLWARVGSMTAP 462          
BLAST of FC875353 vs. ExPASy Swiss-Prot
Match: S22A8_MOUSE (Solute carrier family 22 member 8 OS=Mus musculus GN=Slc22a8 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 40/155 (25.81%), Postives = 70/155 (45.16%), Query Frame = 3
Query:  204 RTTIXXXXXXFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSN--ILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCP 662
            R T       F   FAYY++ + + E                     N+YI + I    +IP   +  + +   GR+++   +  L+ + +L L+   S   +L T L    + C+ G+F+   +Y +E+YPT +R TG G +N   R+G M+ P
Sbjct:  325 RVTFCLSLAWFATGFAYYSLAMGVEEFG------------------VNIYILQIIFGGVDIPAKFITILSISYLGRRITQGFLLILAGVAILALIFVSSEMQLLRTALAVFGKGCLSGSFSCLFLYTSELYPTVLRQTGMGISNIWARVGSMIAP 461          
BLAST of FC875353 vs. ExPASy Swiss-Prot
Match: S22AD_MOUSE (Solute carrier family 22 member 13 OS=Mus musculus GN=Slc22a13 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 38/136 (27.94%), Postives = 69/136 (50.74%), Query Frame = 3
Query:  261 VVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILT--TGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCP 662
            V L++  +  +D+     L F       ++Y+ + I    E+PG  L+ ++++  GRK S     TL+ +  + ++    ++ T  T L    +     AFT+S +Y AE+YPT +R TG G  +   R+GG++ P
Sbjct:  333 VTLILIAVWFVDSLVYYSLSFQVGDFGLDIYVTQLIFGAVEMPGRFLSVLMMEKLGRKWSQLCTLTLAGIMYIIIIFIPGDLPTVVTVLAVVGKFASAAAFTISYVYTAELYPTIIRQTGMGLVSIFSRVGGIITP 468          
BLAST of FC875353 vs. ExPASy Swiss-Prot
Match: S22A8_RAT (Solute carrier family 22 member 8 OS=Rattus norvegicus GN=Slc22a8 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 39/155 (25.16%), Postives = 69/155 (44.52%), Query Frame = 3
Query:  204 RTTIXXXXXXFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLS--CLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCP 662
            R T       F   FAYY++ + + E                     N+YI + I    +IP   +  + +   GR+++ + +  L+   +  L  V  +  +L T L    + C+ G+F+   +Y +E+YPT +R TG G +N   R+G M+ P
Sbjct:  325 RVTFCLSLAWFSTGFAYYSLAMGVEEFG------------------VNIYILQIIFGGVDIPAKFITILSLSYLGRRITQSFLLLLAGGAILALIFVPSEMQLLRTALAVFGKGCLSGSFSCLFLYTSELYPTVLRQTGMGISNVWARVGSMIAP 461          
The following BLAST results are available for this feature:
BLAST of FC875353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
S22A8_PIG1.314e-1126.45Solute carrier family 22 member 8 OS=Sus scrofa GN... [more]
S22A8_MOUSE1.314e-1125.81Solute carrier family 22 member 8 OS=Mus musculus ... [more]
S22AD_MOUSE1.716e-1127.94Solute carrier family 22 member 13 OS=Mus musculus... [more]
S22A8_RAT2.927e-1125.16Solute carrier family 22 member 8 OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionC31403A03EF CTVClemen1 Citrus clementina cDNA clone C31403A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875353 ID=FC875353; Name=FC875353; organism=Citrus clementina; type=EST; length=704bp
ATCGTGCTCTGGAGAAAATTGCTCAAGTTAACAAAACAAAGCTCCCAGAT
GGCAAGCTTGTCGCTCATAGATCAACTCTACCGACTGGAGAACGTGCTCC
TCCAGAACTAGTTCATCTACTTTCATCCAATGGTGGAAACAAAACCACAG
AGGGCAAATCAGGCTTATCGTTGTTTCTTATGCTTTTCTCTTCAAAATTA
GCTAGAACAACCATTCTCCTGTGGTTGCTACTCTTTGGAAATTCATTCGC
ATATTATGCTGTTGTCCTGCTGATCTCCGAGCTGAGCAGCCTAGATACTA
GATGTCGCTCACCTTTGATGTTTTCGCATCATCCCCAGGATGCTAATCTC
TATATAGACGAATTCATCACTAGCTTGGCAGAGATTCCTGGACTTCTTTT
GGCTGCAATACTTGTGGACACAGCTGGGCGCAAGCTTTCCATTACCATTA
TGTTCACCTTATCTTGCCTTTTTCTACTACCACTGGTTACCTATCAGTCC
AATATTTTAACAACAGGCTTGCTGTTTGGGGCTCGCATGTGTGTCATGGG
TGCCTTTACAGTTTCCTTAATTTATGCTGCAGAGATCTATCCAACTTCAG
TGAGATCAACGGGTGCTGGAGCTGCCAACGCTATGGGAAGAATCGGTGGC
ATGGTATGCCCTCTGGTAGCGGTTGCACTGGTGGCCATTGCCATCAATGA
CTGC
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