FC875354

Overview
NameFC875354
Unique NameFC875354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14907 contig Ccv1_Contig14907:634..1385. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: OS13_SOLCO (Osmotin-like protein OSML13 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.083e-30
Identity = 80/196 (40.82%), Postives = 99/196 (50.51%), Query Frame = 2
Query:  134 ATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLSPNKAYTIRLPP-LWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQ--QQDFYDVSLVDGYNIAMSILPIRGS-GKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAXHSPRYCCTGSFGNPQSCKPTAYSRIFKALCPE 709
            A TI + N C + VW     +A  P+   GG +L   + + I  P      R WGR  C FD +GRG C TGDCGG L C G  G PP TLAE  L Q    DF+D+SLVDG+NI M+  P   S GKC    C +++N  CP  L+V        C + C      +YCCT        C PT  SR FK  CP+
Sbjct:   21 AATIEVRNNCPYTVW-----AASTPI--GGGRRLDRGQTWVINAPRGTKMARIWGRTNCNFDGAGRGSCQTGDCGGVLQCTG-WGKPPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTNPSGGKCHAIHCTANINGECPGSLRVPG-----GCNNPCTTFGGQQYCCTQG-----PCGPTDLSRFFKQRCPD 198          
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: P21_SOYBN (Protein P21 OS=Glycine max PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.292e-30
Identity = 75/188 (39.89%), Postives = 102/188 (54.26%), Query Frame = 2
Query:  155 NKCEHPVWPGIQASAGKPLLARGGFKLSPNKAYTIRLPPLWSG-RFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLG--QQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAXHSPRYCCTGSFGNPQSCKPTAYSRIFKALCPE 709
            N+C + VW     +A  P+   GG +L+P +++++ +P    G R W R GC FD SGRG C TGDCGG L C    G+PP TLAE  L      DF+D+SLVDG+N+ M   P   +G      C +D+N  CP+ L+ +       C + C    + +YCC     N  SC PT YSR FK  CP+
Sbjct:    7 NRCTYTVW-----AASVPV--GGGVQLNPGQSWSVDVPAGTKGARVWARTGCNFDGSGRGGCQTGDCGGVLDCKAY-GAPPNTLAEYGLNGFNNLDFFDISLVDGFNVPMDFSP-TSNGCTRGISCTADINGQCPSELKTQG-----GCNNPCTVFKTDQYCC-----NSGSCGPTDYSRFFKQRCPD 175          

HSP 2 Score: 21.1718 bits (43), Expect = 1.292e-30
Identity = 8/16 (50.00%), Postives = 10/16 (62.50%), Query Frame = 3
Query:  687 FSRRFVQSYSYAYDDP 734
            F +R   +YSY  DDP
Sbjct:  169 FKQRCPDAYSYPKDDP 184          
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: OSMO_TOBAC (Osmotin OS=Nicotiana tabacum GN=AP24 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 2.840e-30
Identity = 79/196 (40.31%), Postives = 101/196 (51.53%), Query Frame = 2
Query:  134 ATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLSPNKAYTIRLPP-LWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQQ--DFYDVSLVDGYNIAMSILPIRGS-GKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAXHSPRYCCTGSFGNPQSCKPTAYSRIFKALCPE 709
            A TI + N C + VW     +A  P+   GG +L   + + I  P      R WGR  C F+A+GRG C TGDCGG L C G  G PP TLAE  L Q    DF+D+SLVDG+NI M+  P   S GKC    C +++N  CP  L+V        C + C      +YCCT        C PT +S+ FK  CP+
Sbjct:   21 AATIEVRNNCPYTVW-----AASTPI--GGGRRLDRGQTWVINAPRGTKMARVWGRTNCNFNAAGRGTCQTGDCGGVLQCTG-WGKPPNTLAEYALDQFSGLDFWDISLVDGFNIPMTFAPTNPSGGKCHAIHCTANINGECPRELRVPG-----GCNNPCTTFGGQQYCCTQG-----PCGPTFFSKFFKQRCPD 198          

HSP 2 Score: 21.557 bits (44), Expect = 2.840e-30
Identity = 8/16 (50.00%), Postives = 10/16 (62.50%), Query Frame = 3
Query:  687 FSRRFVQSYSYAYDDP 734
            F +R   +YSY  DDP
Sbjct:  192 FKQRCPDAYSYPQDDP 207          
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: TPM1_SOLLC (Osmotin-like protein TPM-1 (Fragment) OS=Solanum lycopersicum GN=TPM-1 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.116e-30
Identity = 79/196 (40.31%), Postives = 97/196 (49.49%), Query Frame = 2
Query:  134 ATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLSPNKAYTIRLPP-LWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQ--QQDFYDVSLVDGYNIAMSILPIRGS-GKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAXHSPRYCCTGSFGNPQSCKPTAYSRIFKALCPE 709
            A T  + N C + VW     +A  P+   GG +L   + + I  P      R WGR  C FD  GRG C TGDCGG L C G  G PP TLAE  L Q    DF+D+SLVDG+NI M+  P   S GKC    C +++N  CP  L+V        C + C      +YCCT        C PT  SR FK  CP+
Sbjct:   13 AATFEVRNNCPYTVW-----AASTPI--GGGRRLDRGQTWVINAPRGTKMARIWGRTNCNFDGDGRGSCQTGDCGGVLQCTG-WGKPPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTNPSGGKCHAIHCTANINGECPGSLRVPG-----GCNNPCTTFGGQQYCCTQG-----PCGPTDLSRFFKQRCPD 190          
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: OS35_SOLCO (Osmotin-like protein OSML15 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.169e-30
Identity = 77/189 (40.74%), Postives = 97/189 (51.32%), Query Frame = 2
Query:  155 NKCEHPVWPGIQASAGKPLLARGGFKLSPNKAYTIRLPP-LWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQ--QQDFYDVSLVDGYNIAMSILPIR-GSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAXHSPRYCCTGSFGNPQSCKPTAYSRIFKALCPE 709
            N C + VW     +A  P+   GG +L   +++    PP     R WGR  C FD +GRG C TGDCGG L C G  G PP TLAE  L Q    DF+D+S++DG+NI MS  P   G GKC    CV+++N  CP  L+V        C + C      +YCCT        C PT  SR FK  CP+
Sbjct:   29 NNCPYTVW-----AAATPI--GGGRRLERGQSWWFWAPPGTKMARIWGRTNCNFDGAGRGWCQTGDCGGVLECKG-WGKPPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPTNPGPGKCHPIQCVANINGECPGSLRVPG-----GCNNPCTTFGGQQYCCTQG-----PCGPTDLSRFFKQRCPD 199          
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: THM1_THADA (Thaumatin-1 OS=Thaumatococcus daniellii PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.198e-29
Identity = 76/193 (39.38%), Postives = 100/193 (51.81%), Query Frame = 2
Query:  140 TITLFNKCEHPVWPGIQASAGKPLLARGGFKLSPNKAYTIRLPPLWSG-RFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQ-QDFYDVSLVDGYNIAMSILP-IRGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAXHSPRYCCTGSFGNPQSCKPTAYSRIFKALCPE 709
            T  + N+C + VW    AS G   L  GG +L+  +++TI + P  +G + W R  C FD SG G C TGDCGG L C    G PP TLAE +L Q  +D+ D+S + G+N+ M+  P  RG   C    C +D+   CPA L+         C  AC    +  YCCT        C PT YSR FK LCP+
Sbjct:    2 TFEIVNRCSYTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSGSGICKTGDCGGLLRCKRF-GRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMNFSPTTRG---CRGVRCAADIVGQCPAKLKAPGG----GCNDACTVFQTSEYCCTTG-----KCGPTEYSRFFKRLCPD 179          
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: OLPA_TOBAC (Osmotin-like protein OS=Nicotiana tabacum GN=OLPA PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.484e-29
Identity = 76/189 (40.21%), Postives = 97/189 (51.32%), Query Frame = 2
Query:  155 NKCEHPVWPGIQASAGKPLLARGGFKLSPNKAYTIRLPP-LWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQ--QQDFYDVSLVDGYNIAMSILPIR-GSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAXHSPRYCCTGSFGNPQSCKPTAYSRIFKALCPE 709
            N C + VW     +A  P+   GG +L   +++    PP     R WGR  C FD +GRG C TGDCGG L C G  G PP TLAE  L Q    DF+D+S++DG+NI MS  P + G GKC    C +++N  CP  L+V        C + C      +YCCT        C PT  SR FK  CP+
Sbjct:   29 NNCPYTVW-----AAATPV--GGGRRLERGQSWWFWAPPGTKMARIWGRTNCNFDGAGRGWCQTGDCGGVLECKG-WGKPPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPTKPGPGKCHGIQCTANINGECPGSLRVPG-----GCNNPCTTFGGQQYCCTQG-----PCGPTELSRWFKQRCPD 199          
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: TLP_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os12g0628600 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.014e-28
Identity = 72/155 (46.45%), Postives = 90/155 (58.06%), Query Frame = 2
Query:  134 ATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLSPNKAYTIRLPP-LWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCP-AGLQVRSNSRVVAC 592
            A T T+ N+C   VWP     A  P+   GG +LSP + +TI +P    SGR WGR GC FD SGRG CATGDC G+L C  + G  P TLAE T+G  QDFYD+S++DGYN+AMS         CS    V+  +  CP A L    N++  AC
Sbjct:   26 AATFTITNRCSFTVWP-----AATPV--GGGVQLSPGQTWTINVPAGTSSGRVWGRTGCSFDGSGRGSCATGDCAGALSCT-LSGQKPLTLAEFTIGGSQDFYDLSVIDGYNVAMSF-------SCSSGVTVTCRDSRCPDAYLFPEDNTKTHAC 165          
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: TLP_ACTDE (Thaumatin-like protein OS=Actinidia deliciosa GN=tlp PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.618e-26
Identity = 70/196 (35.71%), Postives = 92/196 (46.94%), Query Frame = 2
Query:  131 KATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLSPNKAYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQ--QQDFYDVSLVDGYNIAMSILPIRGSGKCSYA-GCVSDLNLMCPAGLQVRSNSRVVACKSACFAXHSPRYCCTGSFGNPQSCKPTAYSRIFKALCPE 709
            +  T  + N C   VW       GK L     + ++P              R W R GC FD +GRG+C TGDC G L C    G PP TLAE  L Q    DF+D+SLVDG+N+AM   P   SG C+    C +D+N  CP  L+         C + C    + +YCC     N  +C  T +S+ FK  CP+
Sbjct:   23 RGATFNIINNCPFTVWAAAVPGGGKRLDRGQNWIINPGAGTK-------GARVWPRTGCNFDGAGRGKCQTGDCNGLLQCQAF-GQPPNTLAEYALNQFNNLDFFDISLVDGFNVAMEFSPT--SGGCTRGIKCTADINGQCPNELRAPG-----GCNNPCTVFKTDQYCC-----NSGNCGLTNFSKFFKDRCPD 198          
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: RST3_AVESA (Thaumatin-like pathogenesis-related protein 3 OS=Avena sativa GN=RASTL-3 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.819e-24
Identity = 64/138 (46.38%), Postives = 81/138 (58.70%), Query Frame = 2
Query:  116 FSHNIKATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLSPNKAYTIRLPPLWS-GRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQQDFYDVSLVDGYNIAMSILPIRGSG-KCSYAGC 523
            F+    A T  + N C   VWP     AG P+   GGF+L+  ++  I +P   S GR WGR GC F+ +GRG CATGDC G+L C   G   PATLAE T+G  QDFYD+S++DGYN+AM      G   KC  +GC
Sbjct:   15 FAAGASAATFRITNNCGFTVWP-----AGIPV--GGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG--QPATLAEYTIGGSQDFYDISVIDGYNLAMDFSCSTGVALKCRDSGC 142          
The following BLAST results are available for this feature:
BLAST of FC875354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
OS13_SOLCO1.083e-3040.82Osmotin-like protein OSML13 OS=Solanum commersonii... [more]
P21_SOYBN1.292e-3039.89Protein P21 OS=Glycine max PE=1 SV=1[more]
OSMO_TOBAC2.840e-3040.31Osmotin OS=Nicotiana tabacum GN=AP24 PE=1 SV=2[more]
TPM1_SOLLC4.116e-3040.31Osmotin-like protein TPM-1 (Fragment) OS=Solanum l... [more]
OS35_SOLCO9.169e-3040.74Osmotin-like protein OSML15 OS=Solanum commersonii... [more]
THM1_THADA1.198e-2939.38Thaumatin-1 OS=Thaumatococcus daniellii PE=1 SV=1[more]
OLPA_TOBAC3.484e-2940.21Osmotin-like protein OS=Nicotiana tabacum GN=OLPA ... [more]
TLP_ORYSJ1.014e-2846.45Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]
TLP_ACTDE1.618e-2635.71Thaumatin-like protein OS=Actinidia deliciosa GN=t... [more]
RST3_AVESA9.819e-2446.38Thaumatin-like pathogenesis-related protein 3 OS=A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31403A04EF CTVClemen1 Citrus clementina cDNA clone C31403A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875354 ID=FC875354; Name=FC875354; organism=Citrus clementina; type=EST; length=751bp
GACTCTCCTCTCACTCACTGCCTTCAAATCTTTTGCTTTTTGCTGAGTTT
CAGCCATGGCAGTAACAATGCTGCTTAGATCTCTACTCGCTCTCTTGCTC
ACCACCATCGTCCTCTTCTCTCACAATATCAAAGCTACAACAATCACATT
ATTCAACAAATGCGAGCACCCAGTTTGGCCCGGAATACAAGCGAGCGCAG
GCAAGCCACTACTGGCACGTGGCGGCTTCAAGCTCTCACCAAACAAGGCC
TACACCATACGCCTACCGCCCCTCTGGTCCGGGCGCTTCTGGGGTCGCCA
TGGATGCAGGTTCGACGCCTCAGGCCGGGGCCGCTGCGCCACCGGGGACT
GCGGCGGATCGCTCTTCTGCAACGGCATAGGCGGCAGCCCGCCGGCCACC
CTCGCCGAAATCACGCTGGGGCAGCAGCAGGACTTCTACGACGTGAGCCT
GGTCGACGGTTACAACATCGCAATGTCGATTTTGCCCATCAGAGGCTCCG
GGAAATGCAGCTACGCTGGGTGTGTGAGTGACCTGAACTTGATGTGTCCC
GCGGGGCTACAAGTGAGGTCCAACAGCAGAGTGGTGGCCTGCAAAAGTGC
TTGTTTCGCTTTNCACTCGCCCAGGTATTGCTGCACTGGGAGCTTTGGGA
ATCCTCAATCCTGCAAGCCCACTGCTTACTCCAGGATTTTCAAGGCGCTT
TGTCCAGAGCTACAGCTATGCTTATGATGATCCACTAGTATGCTACTGCA
C
back to top