FC875354

Overview
NameFC875354
Unique NameFC875354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14907 contig Ccv1_Contig14907:634..1385. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: RST2_AVESA (Thaumatin-like pathogenesis-related protein 2 OS=Avena sativa GN=RASTL-2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.187e-23
Identity = 64/138 (46.38%), Postives = 80/138 (57.97%), Query Frame = 2
Query:  116 FSHNIKATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLSPNKAYTIRLPPLWS-GRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQQDFYDVSLVDGYNIAMSILPIRGSG-KCSYAGC 523
            F+    A T  + N C   VWP     AG P+   GGF+L+  ++  I +P   S GR WGR GC F+ +GRG CATGDC G+L C   G   PATLAE T+G  QDFYD+S++DGYN+AM      G   KC  A C
Sbjct:   15 FAAGASAATFRITNNCGFTVWP-----AGIPV--GGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG--QPATLAEYTIGGSQDFYDISVIDGYNLAMDFSCSTGVALKCRDANC 142          
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: RST1_AVESA (Thaumatin-like pathogenesis-related protein 1 OS=Avena sativa GN=RASTL-1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.364e-23
Identity = 63/138 (45.65%), Postives = 80/138 (57.97%), Query Frame = 2
Query:  116 FSHNIKATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLSPNKAYTIRLPPLWS-GRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQQDFYDVSLVDGYNIAMSILPIRGSG-KCSYAGC 523
            F+    A T  + N C   VWP     AG P+   GGF+L+  ++  I +P   S GR WGR GC F+ +GRG CATGDC G+L C   G   PATLAE T+G  QDFYD+S++DG+N+AM      G   KC  A C
Sbjct:   15 FAAGASAATFRITNNCGFTVWP-----AGIPV--GGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG--QPATLAEYTIGGSQDFYDISVIDGFNLAMDFSCSTGVALKCRDANC 142          
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: PR1A_HORVU (Pathogenesis-related protein 1A/1B OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.674e-21
Identity = 59/148 (39.86%), Postives = 79/148 (53.38%), Query Frame = 2
Query:  116 FSHNIKATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLSPNKAYTIRLPP-LWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLG--QQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCP 550
            F+    A T  + N C   +WP     AG P+   GGF+L   +  +I +P    +GR W R GC F+  G G C TGDCGG L C+ + G PPATLAE T+G    QDFYD+S++DG+N+AM          CS    +   +  CP
Sbjct:   14 FAAGASAATFNIKNNCGSTIWP-----AGIPV--GGGFELGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCS-LSGQPPATLAEFTIGGGSTQDFYDISVIDGFNLAMDF-------SCSTGDALQCRDPSCP 145          
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: PR1C_HORVU (Pathogenesis-related protein 1C OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.492e-21
Identity = 59/148 (39.86%), Postives = 79/148 (53.38%), Query Frame = 2
Query:  116 FSHNIKATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLSPNKAYTIRLPP-LWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLG--QQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCP 550
            F+    A T  + N C   +WP     AG P+   GGF+L   +  +I +P    +GR W R GC F+  G G C TGDCGG L C+ + G PPATLAE T+G    QDFYD+S++DG+N+AM          CS    +   +  CP
Sbjct:   14 FAAGASAATFNIKNNCGSTIWP-----AGIPV--GGGFELGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCS-LSGRPPATLAEFTIGGGSTQDFYDISVIDGFNLAMDF-------SCSTGDALQCRDPSCP 145          
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: TLP_WHEAT (Thaumatin-like protein PWIR2 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.780e-21
Identity = 59/148 (39.86%), Postives = 78/148 (52.70%), Query Frame = 2
Query:  116 FSHNIKATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLSPNKAYTIRLPP-LWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLG--QQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCP 550
            F+    A T  + N C   +WP     AG P+   GGF L   +  +I +P    +GR W R GC F+  G G C TGDCGG L C+ + G PPATLAE T+G    QDFYD+S++DG+N+AM          CS    +   +  CP
Sbjct:   14 FAAGASAATFNIKNNCGFTIWP-----AGIPV--GGGFALGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCS-LSGRPPATLAEYTIGGGSTQDFYDISVIDGFNLAMDF-------SCSTGDALQCRDPSCP 145          
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: RST4_AVESA (Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa GN=RASTL-4 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.602e-20
Identity = 55/162 (33.95%), Postives = 81/162 (50.00%), Query Frame = 2
Query:  116 FSHNIKATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLSPNKAYTIRLPP-LWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKS 598
            F+ +  A T T+ N C + VWP         +   GG +L   + +T+ +P    SGR WGR GC F+  G G C TGDC G+L C   G   PATLAE ++G + D+YD+S++D YN+AM          CS    +   +  CP       + +  +C +
Sbjct:   15 FAASASAATFTITNNCGYTVWPAA-------IPVGGGQQLDQGQTWTLNVPAGTNSGRIWGRTGCSFNG-GSGSCQTGDCAGALSCTLSG--QPATLAEFSIGGEHDYYDISVIDVYNLAMDF-------SCSTGDALQCRDSSCPDAYHQPDDPKTHSCNT 159          
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: PRR3_JUNVI (Pathogenesis-related protein (Fragment) OS=Juniperus virginiana PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 9.212e-14
Identity = 44/99 (44.44%), Postives = 55/99 (55.56%), Query Frame = 2
Query:  134 ATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLSPNKAYTIRLPP-LWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQ 427
            A    + N+C + VW     +AG P    GG +L   + +T+ L     S RFWGR GC FDASG+G C TGDCG  L C  + G+ PATLAE T   Q
Sbjct:   19 AVKFDIKNQCGYTVW-----AAGLP---GGGKRLDQGQTWTVNLAAGTASARFWGRTGCTFDASGKGSCQTGDCGRQLSCT-VSGAVPATLAEYTQSDQ 108          
The following BLAST results are available for this feature:
BLAST of FC875354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RST2_AVESA2.187e-2346.38Thaumatin-like pathogenesis-related protein 2 OS=A... [more]
RST1_AVESA6.364e-2345.65Thaumatin-like pathogenesis-related protein 1 OS=A... [more]
PR1A_HORVU2.674e-2139.86Pathogenesis-related protein 1A/1B OS=Hordeum vulg... [more]
PR1C_HORVU3.492e-2139.86Pathogenesis-related protein 1C OS=Hordeum vulgare... [more]
TLP_WHEAT7.780e-2139.86Thaumatin-like protein PWIR2 OS=Triticum aestivum ... [more]
RST4_AVESA8.602e-2033.95Thaumatin-like pathogenesis-related protein 4 OS=A... [more]
PRR3_JUNVI9.212e-1444.44Pathogenesis-related protein (Fragment) OS=Juniper... [more]

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Properties
Property NameValue
Genbank descriptionC31403A04EF CTVClemen1 Citrus clementina cDNA clone C31403A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875354 ID=FC875354; Name=FC875354; organism=Citrus clementina; type=EST; length=751bp
GACTCTCCTCTCACTCACTGCCTTCAAATCTTTTGCTTTTTGCTGAGTTT
CAGCCATGGCAGTAACAATGCTGCTTAGATCTCTACTCGCTCTCTTGCTC
ACCACCATCGTCCTCTTCTCTCACAATATCAAAGCTACAACAATCACATT
ATTCAACAAATGCGAGCACCCAGTTTGGCCCGGAATACAAGCGAGCGCAG
GCAAGCCACTACTGGCACGTGGCGGCTTCAAGCTCTCACCAAACAAGGCC
TACACCATACGCCTACCGCCCCTCTGGTCCGGGCGCTTCTGGGGTCGCCA
TGGATGCAGGTTCGACGCCTCAGGCCGGGGCCGCTGCGCCACCGGGGACT
GCGGCGGATCGCTCTTCTGCAACGGCATAGGCGGCAGCCCGCCGGCCACC
CTCGCCGAAATCACGCTGGGGCAGCAGCAGGACTTCTACGACGTGAGCCT
GGTCGACGGTTACAACATCGCAATGTCGATTTTGCCCATCAGAGGCTCCG
GGAAATGCAGCTACGCTGGGTGTGTGAGTGACCTGAACTTGATGTGTCCC
GCGGGGCTACAAGTGAGGTCCAACAGCAGAGTGGTGGCCTGCAAAAGTGC
TTGTTTCGCTTTNCACTCGCCCAGGTATTGCTGCACTGGGAGCTTTGGGA
ATCCTCAATCCTGCAAGCCCACTGCTTACTCCAGGATTTTCAAGGCGCTT
TGTCCAGAGCTACAGCTATGCTTATGATGATCCACTAGTATGCTACTGCA
C
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