FC875358

Overview
NameFC875358
Unique NameFC875358
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB3_BOVIN (Proteasome subunit beta type-3 OS=Bos taurus GN=PSMB3 PE=1 SV=3)

HSP 1 Score: 223.016 bits (567), Expect = 1.123e-57
Identity = 107/185 (57.84%), Postives = 144/185 (77.84%), Query Frame = 3
Query:  120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIV 671
            YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +PVIAGL  +  KPFIC++D IG   +  DFVV+GT  E +YG CE++++P+M+P+ LFET+SQA+L++VDRD +SG G  V+I+
Sbjct:    6 YNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCTEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMGVIVHII 190          
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB3_DROME (Proteasome subunit beta type-3 OS=Drosophila melanogaster GN=Prosbeta3 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.621e-56
Identity = 100/185 (54.05%), Postives = 138/185 (74.59%), Query Frame = 3
Query:  120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIV 671
            YNG  +VAM GK+C AIA+D R G+Q QTI+TDF+++  I  R+F+GL+GL TD  T+  RL+FR  LY+ RE R+M P+ F++++S+ LYE RFGPYF +PV+AGL  +  +PFIC MD IG      DFVVAGT  E LYG CE ++KPD+EPD+LFE ++Q+++++ DRD +SGWG  VYI+
Sbjct:    6 YNGGCVVAMRGKDCVAIATDHRFGIQAQTISTDFKKVFHIGPRMFLGLTGLQTDILTVRDRLMFRKNLYETRENREMCPKPFSAMMSSFLYEHRFGPYFIEPVVAGLDPKTMEPFICNMDLIGCPNAPDDFVVAGTCAEQLYGMCETLWKPDLEPDQLFEVIAQSIVNAFDRDAMSGWGATVYII 190          
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB3_CAEEL (Proteasome subunit beta type-3 OS=Caenorhabditis elegans GN=pbs-3 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.267e-50
Identity = 86/185 (46.49%), Postives = 131/185 (70.81%), Query Frame = 3
Query:  120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674
            Y G  +VAM G  C  IASD R+G Q+ TIATD +++ K+ D++++GL+G  +D++T+ ++++FR  LY+LRE R++KP+  + ++S L Y+ RFG YF +P++AGL D +KP+IC MD+IG     +DFV  GT  E L G CE  ++ +M+PDELFE  +Q++LS ++RD  SGWG  VY +T
Sbjct:    6 YTGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTIGCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAASGWGAVVYTIT 190          
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB3_YEAST (Proteasome component PUP3 OS=Saccharomyces cerevisiae GN=PUP3 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.867e-50
Identity = 95/184 (51.63%), Postives = 136/184 (73.91%), Query Frame = 3
Query:  123 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIV 671
            NG  +VAM GK+C AIA D RLG Q   ++  F++I   +  +F+G++GLATD  TL +   ++  LY+L+EER ++PETF  LVS+ LYE+RFGPYF  PV+AG++ +  KPFI   D IG  + AKDF+V+GTA + L+G CE++++P++EP++LFET+SQALL++ DRD LSGWG  VYI+
Sbjct:    8 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFH-YGHVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAVVYII 190          
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB3_TRYBB (Proteasome subunit beta type-3 OS=Trypanosoma brucei brucei GN=PSB3 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.227e-47
Identity = 91/186 (48.92%), Postives = 133/186 (71.51%), Query Frame = 3
Query:  120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDE-DKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674
            Y+G + +AM GK CF + SD RLG QL+TI+ +  ++  I+D + +GL+GL TD QT  Q++ FR ++Y+LREERD+  + FA+LVS++LYE RFGP+F +PVI  +  +  + ++C  D IGA    +D+V AGT  ESL+G CEA+++P +EP+ELFE  +QA+LS+ DRD LSG+G    IVT
Sbjct:    6 YSGGSCLAMAGKECFVVISDNRLGEQLKTISMEVPKLHVINDGIVMGLTGLRTDQQTFAQKVNFRTEMYKLREERDINGKAFAALVSSMLYEARFGPWFVEPVIGTIDRKTGEVYLCATDLIGAPCEPEDYVCAGTCAESLHGMCEALWRPGLEPEELFEVAAQAMLSACDRDSLSGYGAVAAIVT 191          
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB3_GIALA (Proteasome subunit beta type-3 OS=Giardia lamblia GN=PRSBETA3 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.473e-41
Identity = 78/186 (41.94%), Postives = 120/186 (64.52%), Query Frame = 3
Query:  117 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIAT-DFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIV 671
            EYNGSAL+ + G +C A+A+D+RLG   QT+   + +RI ++     +GL+GL TD  T Y+++  +  LY L+E+R+++P   A ++S+ LY+ RFGPYF  P+IAG   + KP++  MD+IG  +   +F +AGTA + L G CE   KPDM  DE+   + Q + S+ +RD  SGWG HV ++
Sbjct:    6 EYNGSALIGIKGXDCVALAADKRLGCSYQTLTIGNEERIFRLSQSCLLGLAGLQTDVLTTYRQIRMKSNLYHLQEDREIRPRATAKMISSFLYKHRFGPYFISPIIAGFEADGKPYLGAMDTIGCLDDCTNFQIAGTASDFLLGLCETHVKPDMSEDEILPLMEQIIRSATNRDAYSGWGAHVVVL 191          
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.304e-17
Identity = 58/185 (31.35%), Postives = 93/185 (50.27%), Query Frame = 3
Query:  120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674
            Y G+  V +V K+   +A+++R  +     +   ++I +I DR+ +  +G   D+Q L + +     LY++R ER       A+L S LL   R+ PY  Q +I G+  E K  I ++D IG     KD V  G+   + YG  E  F P++  DE  E   +A+ S++ RD  SG G  V  +T
Sbjct:    9 YKGTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKS-IYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKIT 192          
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.653e-16
Identity = 48/183 (26.23%), Postives = 93/183 (50.82%), Query Frame = 3
Query:  126 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674
            G+  V ++  +   +A+D+R  +       + +++ KI D + + ++G   D+Q + + L+   KLY++R  R++ P   A+L+S +L+  R  P+  Q +I G    +   + ++D +G     K F   G+     YG  EA +  DM  +E  +    AL S+++RD  SG G  + ++T
Sbjct:    6 GTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVIT 188          
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB1_ARATH (Proteasome subunit beta type-1 OS=Arabidopsis thaliana GN=PBF1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.368e-15
Identity = 43/124 (34.68%), Postives = 66/124 (53.23%), Query Frame = 3
Query:  123 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKE 494
            NG   VA+ G +   IA+D R+      ++ D+ +I K+ DR  +  SG   D + L + L  RH +YQ +  + M     A L+S  LY KRF PY+   V+ GL +E K  + T D++G+ E
Sbjct:   14 NGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDEEGKGCVFTYDAVGSYE 137          
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB1_ORYSJ (Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica GN=PBF1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.175e-14
Identity = 53/171 (30.99%), Postives = 80/171 (46.78%), Query Frame = 3
Query:  117 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVD 629
            E NG   VA+ G +   +A+D RL V    +  D  +I ++ D+  +  SG   D + L++ L  R  LYQ +  + M     A L+S  LY KRF PY+   V+ GL  E K  + T D++G+ E           G S  G   A+  P +  D   ++ S  LL + D
Sbjct:   10 ENNGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKALHKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFTYDAVGSYE---------RTGYSAQGTGSALIMPVL--DNQLKSPSPLLLPARD 169          
The following BLAST results are available for this feature:
BLAST of FC875358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSB3_BOVIN1.123e-5757.84Proteasome subunit beta type-3 OS=Bos taurus GN=PS... [more]
PSB3_DROME1.621e-5654.05Proteasome subunit beta type-3 OS=Drosophila melan... [more]
PSB3_CAEEL2.267e-5046.49Proteasome subunit beta type-3 OS=Caenorhabditis e... [more]
PSB3_YEAST3.867e-5051.63Proteasome component PUP3 OS=Saccharomyces cerevis... [more]
PSB3_TRYBB5.227e-4748.92Proteasome subunit beta type-3 OS=Trypanosoma bruc... [more]
PSB3_GIALA1.473e-4141.94Proteasome subunit beta type-3 OS=Giardia lamblia ... [more]
PSMB_ARCFU3.304e-1731.35Proteasome subunit beta OS=Archaeoglobus fulgidus ... [more]
PSMB_METJA3.653e-1626.23Proteasome subunit beta OS=Methanocaldococcus jann... [more]
PSB1_ARATH2.368e-1534.68Proteasome subunit beta type-1 OS=Arabidopsis thal... [more]
PSB1_ORYSJ1.175e-1430.99Proteasome subunit beta type-1 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionC31403A09EF CTVClemen1 Citrus clementina cDNA clone C31403A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875358 ID=FC875358; Name=FC875358; organism=Citrus clementina; type=EST; length=679bp
GAACAACATTTGTCATAAAAGAAGTTGGCAGTCTCAAAATTTTGTTAAAT
CGTTTTGTTCCCAACTGAACTGAACTCGCATCAAGTCACTCTACAACTAT
AATTATGTCTATCACTGAGTACAATGGGAGCGCACTCGTTGCGATGGTCG
GAAAGAACTGCTTTGCCATTGCCAGCGATCGGCGCCTCGGCGTTCAGCTT
CAGACAATAGCCACTGATTTTCAGCGAATTTCCAAAATTCACGATCGCCT
TTTTATCGGCCTCTCTGGACTCGCCACTGATTCCCAGACCTTGTATCAAA
GGCTGGTGTTTCGTCACAAATTGTATCAGCTGCGAGAGGAAAGGGACATG
AAGCCTGAAACTTTTGCTAGCTTAGTCTCTGCTTTGCTTTATGAGAAAAG
GTTTGGCCCTTACTTCTGTCAACCTGTTATTGCTGGATTGAGTGATGAAG
ACAAGCCCTTTATCTGCACAATGGACTCAATTGGAGCCAAGGAGCTTGCA
AAAGATTTTGTTGTTGCTGGAACTGCTGGAGAGTCTCTTTATGGTGCCTG
TGAGGCAATGTTCAAGCCTGATATGGAACCCGATGAGTTGTTTGAAACTG
TATCTCAAGCTTTGTTATCATCTGTTGACCGTGACTGTTTGAGTGGTTGG
GGAGGACATGTCTACATTGTAACACCCAC
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