FC875358

Overview
NameFC875358
Unique NameFC875358
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB1_HUMAN (Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14
Identity = 54/202 (26.73%), Postives = 91/202 (45.05%), Query Frame = 3
Query:  120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKP-----------------DMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674
            +NG  ++A+ G++   +ASD RL         D  +  K+ D+  IG SG   D  TL + +  R K+Y+    + M     A+++S +LY +RF PY+   +I GL +E K  + + D +G+ +  +D   AG       G+  AM +P                  +  D     V    +S+ +RD  +G    + IVT
Sbjct:   35 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQ--RDSFKAG-------GSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVT 227          
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB1_MOUSE (Proteasome subunit beta type-1 OS=Mus musculus GN=Psmb1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.618e-14
Identity = 54/202 (26.73%), Postives = 92/202 (45.54%), Query Frame = 3
Query:  120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEP-----------------DELFETVSQALLSSVDRDCLSGWGGHVYIVT 674
            +NG  ++A+ G++   +ASD RL         D  +  K+ D+  IG SG   D  TL + +  R K+Y+    + M     A+++S +LY +RF PY+   +I GL +E K  + + D +G+ +  +D   AG       G+  AM +P ++                  D     V    +S+ +RD  +G    + IVT
Sbjct:   34 FNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQ--RDSFKAG-------GSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAAERDVYTGDALRICIVT 226          
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB1_BOVIN (Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.618e-14
Identity = 55/202 (27.23%), Postives = 91/202 (45.05%), Query Frame = 3
Query:  120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKP-----------------DMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674
            +NG  ++A+ G++   +ASD RL         D  +  K+ D+  IG SG   D  TL + +  R K+Y+    + M     A+++S +LY +RF PY+   +I GL +E K  + + D +G+ +  +D   AG       G+  AM +P                  +  D     V    +S+ +RD  +G    V IVT
Sbjct:   35 FNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQ--RDSFKAG-------GSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALKVCIVT 227          
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB1_RAT (Proteasome subunit beta type-1 OS=Rattus norvegicus GN=Psmb1 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.420e-14
Identity = 54/202 (26.73%), Postives = 92/202 (45.54%), Query Frame = 3
Query:  120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEP-----------------DELFETVSQALLSSVDRDCLSGWGGHVYIVT 674
            +NG  ++A+ G++   +ASD RL         D  +  K+ D+  IG SG   D  TL + +  R K+Y+    + M     A+++S +LY +RF PY+   +I GL +E K  + + D +G+ +  +D   AG       G+  AM +P ++                  D     V    +S+ +RD  +G    + IVT
Sbjct:   34 FNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIEGLDEEGKGAVYSFDPVGSYQ--RDSFKAG-------GSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAAERDVYTGDALRICIVT 226          
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB1_PETHY (Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14
Identity = 41/124 (33.06%), Postives = 63/124 (50.81%), Query Frame = 3
Query:  123 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKE 494
            NG   VA+ G +   IA+D R+      +  D+ +I K+ D+  +  SG   D + L + L  RH +YQ +  + M       L+S  LY KRF PY+   V+ GL  E K  + T D++G+ E
Sbjct:   14 NGGTCVAVAGADYCVIAADTRMSTGYNILTRDYSKIIKLADKCVMASSGFQADVRALQKVLASRHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCVFTYDAVGSYE 137          
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB1B_CARAU (Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.697e-13
Identity = 48/195 (24.62%), Postives = 94/195 (48.21%), Query Frame = 3
Query:  120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESL----------YGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674
            +NG  ++A+ G++   +ASD RL       + D  +  K+ D   IG SG   D  TL + +  R K+Y+    + M     A+++S +LY +RF PY+   +I GL +E +  + + D +G+ +  +D   AG +  ++          +   E + +  +  ++  + V    +S+ +RD  +G    + I+T
Sbjct:   31 FNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQ--RDTYKAGGSASAMLQPLLDNQIGFKNMENVEQVPLSQEKAVQLVKDVFISAAERDVYTGDALKICIIT 223          
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB1A_CARAU (Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.697e-13
Identity = 48/195 (24.62%), Postives = 94/195 (48.21%), Query Frame = 3
Query:  120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESL----------YGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674
            +NG  ++A+ G++   +ASD RL       + D  +  K+ D   IG SG   D  TL + +  R K+Y+    + M     A+++S +LY +RF PY+   +I GL +E +  + + D +G+ +  +D   AG +  ++          +   E + +  +  ++  + V    +S+ +RD  +G    + I+T
Sbjct:   32 FNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQ--RDTYKAGGSASAMLQPLLDNQIGFKNMENVEQVPLSQEKAVQLVKDVFISAAERDVYTGDALKICIIT 224          
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB1_SCHPO (Probable proteasome subunit beta type-1 OS=Schizosaccharomyces pombe GN=pam1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.449e-13
Identity = 47/125 (37.60%), Postives = 64/125 (51.20%), Query Frame = 3
Query:  123 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQ-RISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKE 494
            NG   VA+ G     +A D R  V    I T FQ R+ ++ D L IG SG   D+  L +R+  R  LY    ER M  ++ A +V  LLY KRF PY+    +AG+  E K  I + D +G+ E
Sbjct:   12 NGGTTVAIAGDGFAILAGDTR-SVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGKGEIYSFDPVGSYE 135          
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.437e-12
Identity = 53/185 (28.65%), Postives = 93/185 (50.27%), Query Frame = 3
Query:  126 GSALVAMVGKNCFAIASDRR--LGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674
            G+  V +  K+    A++RR  +G  +   ATD  +I KI + +   ++G   D+Q+L + L     LY++R    +  E  A+L + +L+  RF P+  Q ++ G+ DE+   I ++D  G   +   FV  G+     YG  E  +  ++  DE  +   +A+ S+++RD  SG G  V  VT
Sbjct:    9 GTTTVGITCKDGVVFATERRASMGNLIAHKATD--KIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGV-DENGAKIYSLDPSGGM-IPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIRAIKSAMERDTYSGNGILVATVT 189          
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB9_MUSMB (Proteasome subunit beta type-9 OS=Mus musculus bactrianus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 45/185 (24.32%), Postives = 89/185 (48.11%), Query Frame = 3
Query:  120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674
            + G+ ++A+       + SD R+      +   F ++S +H R+F  LSG A D+Q +     ++ +L+ L  E        A++V  + Y+ R        ++AG    +   +    ++G   + + F ++G+    +YG  +A +KP M P+E     + A+  +++RD  S  GG +Y+VT
Sbjct:   18 HTGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQV--YGTMGGMLIRQPFTISGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSS--GGVIYLVT 197          
The following BLAST results are available for this feature:
BLAST of FC875358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSB1_HUMAN2.005e-1426.73Proteasome subunit beta type-1 OS=Homo sapiens GN=... [more]
PSB1_MOUSE2.618e-1426.73Proteasome subunit beta type-1 OS=Mus musculus GN=... [more]
PSB1_BOVIN2.618e-1427.23Proteasome subunit beta type-1 OS=Bos taurus GN=PS... [more]
PSB1_RAT3.420e-1426.73Proteasome subunit beta type-1 OS=Rattus norvegicu... [more]
PSB1_PETHY4.466e-1433.06Proteasome subunit beta type-1 OS=Petunia hybrida ... [more]
PSB1B_CARAU1.697e-1324.62Proteasome subunit beta type-1-B OS=Carassius aura... [more]
PSB1A_CARAU1.697e-1324.62Proteasome subunit beta type-1-A OS=Carassius aura... [more]
PSB1_SCHPO6.449e-1337.60Probable proteasome subunit beta type-1 OS=Schizos... [more]
PSMB_METTH1.437e-1228.65Proteasome subunit beta OS=Methanobacterium thermo... [more]
PSB9_MUSMB5.459e-1224.32Proteasome subunit beta type-9 OS=Mus musculus bac... [more]

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Properties
Property NameValue
Genbank descriptionC31403A09EF CTVClemen1 Citrus clementina cDNA clone C31403A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875358 ID=FC875358; Name=FC875358; organism=Citrus clementina; type=EST; length=679bp
GAACAACATTTGTCATAAAAGAAGTTGGCAGTCTCAAAATTTTGTTAAAT
CGTTTTGTTCCCAACTGAACTGAACTCGCATCAAGTCACTCTACAACTAT
AATTATGTCTATCACTGAGTACAATGGGAGCGCACTCGTTGCGATGGTCG
GAAAGAACTGCTTTGCCATTGCCAGCGATCGGCGCCTCGGCGTTCAGCTT
CAGACAATAGCCACTGATTTTCAGCGAATTTCCAAAATTCACGATCGCCT
TTTTATCGGCCTCTCTGGACTCGCCACTGATTCCCAGACCTTGTATCAAA
GGCTGGTGTTTCGTCACAAATTGTATCAGCTGCGAGAGGAAAGGGACATG
AAGCCTGAAACTTTTGCTAGCTTAGTCTCTGCTTTGCTTTATGAGAAAAG
GTTTGGCCCTTACTTCTGTCAACCTGTTATTGCTGGATTGAGTGATGAAG
ACAAGCCCTTTATCTGCACAATGGACTCAATTGGAGCCAAGGAGCTTGCA
AAAGATTTTGTTGTTGCTGGAACTGCTGGAGAGTCTCTTTATGGTGCCTG
TGAGGCAATGTTCAAGCCTGATATGGAACCCGATGAGTTGTTTGAAACTG
TATCTCAAGCTTTGTTATCATCTGTTGACCGTGACTGTTTGAGTGGTTGG
GGAGGACATGTCTACATTGTAACACCCAC
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