FC875358
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB1_HUMAN (Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14 Identity = 54/202 (26.73%), Postives = 91/202 (45.05%), Query Frame = 3 Query: 120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKP-----------------DMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674 +NG ++A+ G++ +ASD RL D + K+ D+ IG SG D TL + + R K+Y+ + M A+++S +LY +RF PY+ +I GL +E K + + D +G+ + +D AG G+ AM +P + D V +S+ +RD +G + IVT Sbjct: 35 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQ--RDSFKAG-------GSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVT 227
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB1_MOUSE (Proteasome subunit beta type-1 OS=Mus musculus GN=Psmb1 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.618e-14 Identity = 54/202 (26.73%), Postives = 92/202 (45.54%), Query Frame = 3 Query: 120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEP-----------------DELFETVSQALLSSVDRDCLSGWGGHVYIVT 674 +NG ++A+ G++ +ASD RL D + K+ D+ IG SG D TL + + R K+Y+ + M A+++S +LY +RF PY+ +I GL +E K + + D +G+ + +D AG G+ AM +P ++ D V +S+ +RD +G + IVT Sbjct: 34 FNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQ--RDSFKAG-------GSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAAERDVYTGDALRICIVT 226
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB1_BOVIN (Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.618e-14 Identity = 55/202 (27.23%), Postives = 91/202 (45.05%), Query Frame = 3 Query: 120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKP-----------------DMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674 +NG ++A+ G++ +ASD RL D + K+ D+ IG SG D TL + + R K+Y+ + M A+++S +LY +RF PY+ +I GL +E K + + D +G+ + +D AG G+ AM +P + D V +S+ +RD +G V IVT Sbjct: 35 FNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQ--RDSFKAG-------GSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALKVCIVT 227
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB1_RAT (Proteasome subunit beta type-1 OS=Rattus norvegicus GN=Psmb1 PE=1 SV=3) HSP 1 Score: 78.5666 bits (192), Expect = 3.420e-14 Identity = 54/202 (26.73%), Postives = 92/202 (45.54%), Query Frame = 3 Query: 120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEP-----------------DELFETVSQALLSSVDRDCLSGWGGHVYIVT 674 +NG ++A+ G++ +ASD RL D + K+ D+ IG SG D TL + + R K+Y+ + M A+++S +LY +RF PY+ +I GL +E K + + D +G+ + +D AG G+ AM +P ++ D V +S+ +RD +G + IVT Sbjct: 34 FNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIEGLDEEGKGAVYSFDPVGSYQ--RDSFKAG-------GSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAAERDVYTGDALRICIVT 226
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB1_PETHY (Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14 Identity = 41/124 (33.06%), Postives = 63/124 (50.81%), Query Frame = 3 Query: 123 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKE 494 NG VA+ G + IA+D R+ + D+ +I K+ D+ + SG D + L + L RH +YQ + + M L+S LY KRF PY+ V+ GL E K + T D++G+ E Sbjct: 14 NGGTCVAVAGADYCVIAADTRMSTGYNILTRDYSKIIKLADKCVMASSGFQADVRALQKVLASRHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCVFTYDAVGSYE 137
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB1B_CARAU (Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.697e-13 Identity = 48/195 (24.62%), Postives = 94/195 (48.21%), Query Frame = 3 Query: 120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESL----------YGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674 +NG ++A+ G++ +ASD RL + D + K+ D IG SG D TL + + R K+Y+ + M A+++S +LY +RF PY+ +I GL +E + + + D +G+ + +D AG + ++ + E + + + ++ + V +S+ +RD +G + I+T Sbjct: 31 FNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQ--RDTYKAGGSASAMLQPLLDNQIGFKNMENVEQVPLSQEKAVQLVKDVFISAAERDVYTGDALKICIIT 223
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB1A_CARAU (Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.697e-13 Identity = 48/195 (24.62%), Postives = 94/195 (48.21%), Query Frame = 3 Query: 120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESL----------YGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674 +NG ++A+ G++ +ASD RL + D + K+ D IG SG D TL + + R K+Y+ + M A+++S +LY +RF PY+ +I GL +E + + + D +G+ + +D AG + ++ + E + + + ++ + V +S+ +RD +G + I+T Sbjct: 32 FNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQ--RDTYKAGGSASAMLQPLLDNQIGFKNMENVEQVPLSQEKAVQLVKDVFISAAERDVYTGDALKICIIT 224
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB1_SCHPO (Probable proteasome subunit beta type-1 OS=Schizosaccharomyces pombe GN=pam1 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.449e-13 Identity = 47/125 (37.60%), Postives = 64/125 (51.20%), Query Frame = 3 Query: 123 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQ-RISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKE 494 NG VA+ G +A D R V I T FQ R+ ++ D L IG SG D+ L +R+ R LY ER M ++ A +V LLY KRF PY+ +AG+ E K I + D +G+ E Sbjct: 12 NGGTTVAIAGDGFAILAGDTR-SVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGKGEIYSFDPVGSYE 135
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.437e-12 Identity = 53/185 (28.65%), Postives = 93/185 (50.27%), Query Frame = 3 Query: 126 GSALVAMVGKNCFAIASDRR--LGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674 G+ V + K+ A++RR +G + ATD +I KI + + ++G D+Q+L + L LY++R + E A+L + +L+ RF P+ Q ++ G+ DE+ I ++D G + FV G+ YG E + ++ DE + +A+ S+++RD SG G V VT Sbjct: 9 GTTTVGITCKDGVVFATERRASMGNLIAHKATD--KIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGV-DENGAKIYSLDPSGGM-IPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIRAIKSAMERDTYSGNGILVATVT 189
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB9_MUSMB (Proteasome subunit beta type-9 OS=Mus musculus bactrianus GN=Psmb9 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12 Identity = 45/185 (24.32%), Postives = 89/185 (48.11%), Query Frame = 3 Query: 120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674 + G+ ++A+ + SD R+ + F ++S +H R+F LSG A D+Q + ++ +L+ L E A++V + Y+ R ++AG + + ++G + + F ++G+ +YG +A +KP M P+E + A+ +++RD S GG +Y+VT Sbjct: 18 HTGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQV--YGTMGGMLIRQPFTISGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSS--GGVIYLVT 197 The following BLAST results are available for this feature:
BLAST of FC875358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 37
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875358 ID=FC875358; Name=FC875358; organism=Citrus clementina; type=EST; length=679bpback to top |