FC875358

Overview
NameFC875358
Unique NameFC875358
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB1_DROME (Proteasome subunit beta type-1 OS=Drosophila melanogaster GN=Pros26 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 50/197 (25.38%), Postives = 88/197 (44.67%), Query Frame = 3
Query:  117 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMF-----------KPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674
            E NG ++VA+ G +   IA+D RL       +    ++ K+  +  +G +G   D+ +L   +  R + Y+    R M  E  A ++S  +Y +RF PY+   ++AG+ +E K  + + D IG  E A  +   GTAG  L    +              K  +  +      S   +S+ +RD  +G    + I+T
Sbjct:   26 ESNGGSIVAIAGDDFAVIAADTRLSSGYNIHSRTQSKLFKLSPQTVLGSAGCWADTLSLTGSIKVRMQSYEHTHLRTMTTEAVAQMLSIAMYNRRFFPYYVSNILAGIDNEGKGVVYSYDPIGHCEKA-TYRAGGTAGTLLQPVLDNQIGHKNMNLEDADKIKLTKERAVSVASDTFISAAERDIYTGDSVLINIIT 221          
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB9_MUSSI (Proteasome subunit beta type-9 OS=Mus spicilegus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.130e-12
Identity = 45/185 (24.32%), Postives = 88/185 (47.57%), Query Frame = 3
Query:  120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674
            + G+ ++A+       + SD R+      +   F ++S +H R+F  LSG A D+Q +     ++ +L+ L  E        A++V  + Y+ R        ++AG    +   +    ++G   + + F + G+    +YG  +A +KP M P+E     + A+  +++RD  S  GG +Y+VT
Sbjct:   18 HTGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQV--YGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSS--GGVIYLVT 197          
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB9_MUSDU (Proteasome subunit beta type-9 OS=Mus dunni GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.130e-12
Identity = 45/185 (24.32%), Postives = 88/185 (47.57%), Query Frame = 3
Query:  120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674
            + G+ ++A+       + SD R+      +   F ++S +H R+F  LSG A D+Q +     ++ +L+ L  E        A++V  + Y+ R        ++AG    +   +    ++G   + + F + G+    +YG  +A +KP M P+E     + A+  +++RD  S  GG +Y+VT
Sbjct:   18 HTGTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQV--YGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSS--GGVIYLVT 197          
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB9_MOUSE (Proteasome subunit beta type-9 OS=Mus musculus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.130e-12
Identity = 45/185 (24.32%), Postives = 88/185 (47.57%), Query Frame = 3
Query:  120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674
            + G+ ++A+       + SD R+      +   F ++S +H R+F  LSG A D+Q +     ++ +L+ L  E        A++V  + Y+ R        ++AG    +   +    ++G   + + F + G+    +YG  +A +KP M P+E     + A+  +++RD  S  GG +Y+VT
Sbjct:   18 HTGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQV--YGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSS--GGVIYLVT 197          
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11
Identity = 43/184 (23.37%), Postives = 91/184 (49.46%), Query Frame = 3
Query:  126 GSALVAMVGKNCFAIASDRRLGVQLQTIATD-FQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674
            G+ ++A+       I SD R  +    +++    ++ ++HDR+F  ++G   D+Q + +   F+   + ++ E     +  AS++  L Y  +        + AG   +  P + T+ ++G   L++ F + G+    +YG  +A +KPDM  +E  +  + AL  ++ RD +SG   H+ ++T
Sbjct:   16 GTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNK-EELQAGFITAGWDRKKGPQVYTV-ALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFATNALALAMGRDNVSGGVAHLVVIT 197          
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PB6LA_SALSA (Proteasome subunit beta type-6-A like protein OS=Salmo salar GN=psmb6l-a PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.588e-11
Identity = 43/184 (23.37%), Postives = 90/184 (48.91%), Query Frame = 3
Query:  126 GSALVAMVGKNCFAIASDRRLGVQLQTIATD-FQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674
            G+ ++A+       I SD R  +    +++    ++ ++HDR+F  ++G   D+Q + +   F+   + ++ E     +  AS++  L Y  +        + AG   +  P + T+ ++G   L++ F + G+    +YG  +A +KPDM  +E  +    AL  ++ RD +SG   H+ ++T
Sbjct:   16 GTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNK-EELQAGFITAGWDRKKGPQVYTV-ALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFAKNALALAMGRDNVSGGVAHLVVIT 197          
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB9_RAT (Proteasome subunit beta type-9 OS=Rattus norvegicus GN=Psmb9 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 44/185 (23.78%), Postives = 88/185 (47.57%), Query Frame = 3
Query:  120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674
            + G+ ++A+       + SD R+      +   F ++S +H R++  LSG A D+Q +     ++ +L+ L  E        A++V  + Y+ R        ++AG    +   +    ++G   + + F + G+    +YG  +A +KP M P+E     + A+  +++RD  S  GG +Y+VT
Sbjct:   18 HTGTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIYCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANIVKNISYKYR-EDLLAHLMVAGWDQHEGGQV--YGTMGGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMTPEECRRFTTDAITLAMNRDGSS--GGVIYLVT 197          
The following BLAST results are available for this feature:
BLAST of FC875358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSB1_DROME5.459e-1225.38Proteasome subunit beta type-1 OS=Drosophila melan... [more]
PSB9_MUSSI7.130e-1224.32Proteasome subunit beta type-9 OS=Mus spicilegus G... [more]
PSB9_MUSDU7.130e-1224.32Proteasome subunit beta type-9 OS=Mus dunni GN=Psm... [more]
PSB9_MOUSE7.130e-1224.32Proteasome subunit beta type-9 OS=Mus musculus GN=... [more]
PB6LB_SALSA1.216e-1123.37Proteasome subunit beta type-6-B like protein OS=S... [more]
PB6LA_SALSA1.588e-1123.37Proteasome subunit beta type-6-A like protein OS=S... [more]
PSB9_RAT2.709e-1123.78Proteasome subunit beta type-9 OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionC31403A09EF CTVClemen1 Citrus clementina cDNA clone C31403A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875358 ID=FC875358; Name=FC875358; organism=Citrus clementina; type=EST; length=679bp
GAACAACATTTGTCATAAAAGAAGTTGGCAGTCTCAAAATTTTGTTAAAT
CGTTTTGTTCCCAACTGAACTGAACTCGCATCAAGTCACTCTACAACTAT
AATTATGTCTATCACTGAGTACAATGGGAGCGCACTCGTTGCGATGGTCG
GAAAGAACTGCTTTGCCATTGCCAGCGATCGGCGCCTCGGCGTTCAGCTT
CAGACAATAGCCACTGATTTTCAGCGAATTTCCAAAATTCACGATCGCCT
TTTTATCGGCCTCTCTGGACTCGCCACTGATTCCCAGACCTTGTATCAAA
GGCTGGTGTTTCGTCACAAATTGTATCAGCTGCGAGAGGAAAGGGACATG
AAGCCTGAAACTTTTGCTAGCTTAGTCTCTGCTTTGCTTTATGAGAAAAG
GTTTGGCCCTTACTTCTGTCAACCTGTTATTGCTGGATTGAGTGATGAAG
ACAAGCCCTTTATCTGCACAATGGACTCAATTGGAGCCAAGGAGCTTGCA
AAAGATTTTGTTGTTGCTGGAACTGCTGGAGAGTCTCTTTATGGTGCCTG
TGAGGCAATGTTCAAGCCTGATATGGAACCCGATGAGTTGTTTGAAACTG
TATCTCAAGCTTTGTTATCATCTGTTGACCGTGACTGTTTGAGTGGTTGG
GGAGGACATGTCTACATTGTAACACCCAC
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