FC875358
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB1_DROME (Proteasome subunit beta type-1 OS=Drosophila melanogaster GN=Pros26 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12 Identity = 50/197 (25.38%), Postives = 88/197 (44.67%), Query Frame = 3 Query: 117 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMF-----------KPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674 E NG ++VA+ G + IA+D RL + ++ K+ + +G +G D+ +L + R + Y+ R M E A ++S +Y +RF PY+ ++AG+ +E K + + D IG E A + GTAG L + K + + S +S+ +RD +G + I+T Sbjct: 26 ESNGGSIVAIAGDDFAVIAADTRLSSGYNIHSRTQSKLFKLSPQTVLGSAGCWADTLSLTGSIKVRMQSYEHTHLRTMTTEAVAQMLSIAMYNRRFFPYYVSNILAGIDNEGKGVVYSYDPIGHCEKA-TYRAGGTAGTLLQPVLDNQIGHKNMNLEDADKIKLTKERAVSVASDTFISAAERDIYTGDSVLINIIT 221
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB9_MUSSI (Proteasome subunit beta type-9 OS=Mus spicilegus GN=Psmb9 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.130e-12 Identity = 45/185 (24.32%), Postives = 88/185 (47.57%), Query Frame = 3 Query: 120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674 + G+ ++A+ + SD R+ + F ++S +H R+F LSG A D+Q + ++ +L+ L E A++V + Y+ R ++AG + + ++G + + F + G+ +YG +A +KP M P+E + A+ +++RD S GG +Y+VT Sbjct: 18 HTGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQV--YGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSS--GGVIYLVT 197
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB9_MUSDU (Proteasome subunit beta type-9 OS=Mus dunni GN=Psmb9 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.130e-12 Identity = 45/185 (24.32%), Postives = 88/185 (47.57%), Query Frame = 3 Query: 120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674 + G+ ++A+ + SD R+ + F ++S +H R+F LSG A D+Q + ++ +L+ L E A++V + Y+ R ++AG + + ++G + + F + G+ +YG +A +KP M P+E + A+ +++RD S GG +Y+VT Sbjct: 18 HTGTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQV--YGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSS--GGVIYLVT 197
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB9_MOUSE (Proteasome subunit beta type-9 OS=Mus musculus GN=Psmb9 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.130e-12 Identity = 45/185 (24.32%), Postives = 88/185 (47.57%), Query Frame = 3 Query: 120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674 + G+ ++A+ + SD R+ + F ++S +H R+F LSG A D+Q + ++ +L+ L E A++V + Y+ R ++AG + + ++G + + F + G+ +YG +A +KP M P+E + A+ +++RD S GG +Y+VT Sbjct: 18 HTGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQV--YGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSS--GGVIYLVT 197
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11 Identity = 43/184 (23.37%), Postives = 91/184 (49.46%), Query Frame = 3 Query: 126 GSALVAMVGKNCFAIASDRRLGVQLQTIATD-FQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674 G+ ++A+ I SD R + +++ ++ ++HDR+F ++G D+Q + + F+ + ++ E + AS++ L Y + + AG + P + T+ ++G L++ F + G+ +YG +A +KPDM +E + + AL ++ RD +SG H+ ++T Sbjct: 16 GTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNK-EELQAGFITAGWDRKKGPQVYTV-ALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFATNALALAMGRDNVSGGVAHLVVIT 197
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PB6LA_SALSA (Proteasome subunit beta type-6-A like protein OS=Salmo salar GN=psmb6l-a PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.588e-11 Identity = 43/184 (23.37%), Postives = 90/184 (48.91%), Query Frame = 3 Query: 126 GSALVAMVGKNCFAIASDRRLGVQLQTIATD-FQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674 G+ ++A+ I SD R + +++ ++ ++HDR+F ++G D+Q + + F+ + ++ E + AS++ L Y + + AG + P + T+ ++G L++ F + G+ +YG +A +KPDM +E + AL ++ RD +SG H+ ++T Sbjct: 16 GTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNK-EELQAGFITAGWDRKKGPQVYTV-ALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFAKNALALAMGRDNVSGGVAHLVVIT 197
BLAST of FC875358 vs. ExPASy Swiss-Prot
Match: PSB9_RAT (Proteasome subunit beta type-9 OS=Rattus norvegicus GN=Psmb9 PE=1 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11 Identity = 44/185 (23.78%), Postives = 88/185 (47.57%), Query Frame = 3 Query: 120 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 674 + G+ ++A+ + SD R+ + F ++S +H R++ LSG A D+Q + ++ +L+ L E A++V + Y+ R ++AG + + ++G + + F + G+ +YG +A +KP M P+E + A+ +++RD S GG +Y+VT Sbjct: 18 HTGTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIYCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANIVKNISYKYR-EDLLAHLMVAGWDQHEGGQV--YGTMGGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMTPEECRRFTTDAITLAMNRDGSS--GGVIYLVT 197 The following BLAST results are available for this feature:
BLAST of FC875358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 37
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC875358 ID=FC875358; Name=FC875358; organism=Citrus clementina; type=EST; length=679bpback to top |