FC875366

Overview
NameFC875366
Unique NameFC875366
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875366_ssr20 microsatellite FC875366_ssr20:20..35. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14439 contig Ccv1_Contig14439:5..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875366 vs. ExPASy Swiss-Prot
Match: SAP10_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 10 OS=Oryza sativa subsp. japonica GN=SAP10 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.148e-15
Identity = 46/146 (31.51%), Postives = 69/146 (47.26%), Query Frame = 1
Query:  247 GPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAIIK 684
            G  +C   CGFFGS AT  +CSKCYK    +Q Q +    +     ++TS    ++       D      E   +   P+  ++             +RC +C+K+VGL GF CRCG ++C +H       C FDY+ A R+AI +
Sbjct:   14 GAAMCAAGCGFFGSAATDGLCSKCYKQ---QQPQPRHLIGTAAGDSDKTSLKVVADLSTLVIKDNSGVGGEGTTVMAPPATVTKAK-----------NRCKACRKKVGLLGFPCRCGGMFCGAHA------CAFDYKAAGREAIAR 139          
BLAST of FC875366 vs. ExPASy Swiss-Prot
Match: SAP15_ORYSJ (Zinc finger AN1 domain-containing stress-associated protein 15 OS=Oryza sativa subsp. japonica GN=SAP15 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:  538 SRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAIIKA 687
            +RC+ C+KRVGLTGF+CRCG L+C  HR+S+ H C FDY+TA R+ I +A
Sbjct:  113 NRCNVCRKRVGLTGFRCRCGELFCPRHRHSETHECSFDYKTAGREEIARA 162          
BLAST of FC875366 vs. ExPASy Swiss-Prot
Match: SAP14_ORYSJ (Zinc finger AN1 domain-containing stress-associated protein 14 OS=Oryza sativa subsp. japonica GN=SAP14 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 1
Query:  490 ASELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAIIK 684
            AS  S S     +   +RC++C+++VGLTGFKCRCG  +C  HRY+D+H C FDY+++ R+ I K
Sbjct:  159 ASYSSSSPATGEQPEANRCATCRRKVGLTGFKCRCGGTFCGGHRYADEHGCGFDYKSSGRELIAK 223          
BLAST of FC875366 vs. ExPASy Swiss-Prot
Match: ZFAN3_RAT (AN1-type zinc finger protein 3 OS=Rattus norvegicus GN=Zfand3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.027e-12
Identity = 52/197 (26.40%), Postives = 77/197 (39.09%), Query Frame = 1
Query:  238 PPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGS----IVNETSSSNGSESVAAATVDVQASSVEPKIISVQP----------------------SCASELSESVEAKPKEGP--------------------SRCSSCKKRVGLTGFK---CRCGNLYCVSHRYSDKHNCPFDYRTAARDAII 681
            PP  P      CGF+GS  TMN+CSKC+ D   KQ       S+  S       ET+S N + SV   T+     S+  ++    P                      SC ++     EA P + P                     RC  C+ ++ L   +   CRCG ++C+ HR  ++H+C FD+    R+  I
Sbjct:   15 PPRCP------CGFWGSSKTMNLCSKCFADFQKKQPDDDSTPSTSNSQSDLFSEETTSDNNNTSVTTPTLSPSQQSLPTELNVTSPSEEECGPCTDTAHVSLITPTKRSCGADSQSESEASPVKRPRLVENPERPEESGRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAI 205          
BLAST of FC875366 vs. ExPASy Swiss-Prot
Match: ZFAN3_MOUSE (AN1-type zinc finger protein 3 OS=Mus musculus GN=Zfand3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 52/197 (26.40%), Postives = 77/197 (39.09%), Query Frame = 1
Query:  238 PPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGS----IVNETSSSNGSESVAAATVDVQASSVEPKIISVQP----------------------SCASELSESVEAKPKEGP--------------------SRCSSCKKRVGLTGFK---CRCGNLYCVSHRYSDKHNCPFDYRTAARDAII 681
            PP  P      CGF+GS  TMN+CSKC+ D   KQ       S+  S       ET+S N + SV   T+     S+  ++    P                      SC ++     EA P + P                     RC  C+ ++ L   +   CRCG ++C+ HR  ++H+C FD+    R+  I
Sbjct:   15 PPRCP------CGFWGSSKTMNLCSKCFADFQKKQPDDDSTPSTSNSQSDLFSEETTSDNNNTSVTTPTLSPSQQSLPTELNVTSPSTEECGPCTDTAHVSLITPTKRSCGADSQSENEASPVKRPRLVENPERPEESGRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAI 205          
BLAST of FC875366 vs. ExPASy Swiss-Prot
Match: ZFAN3_HUMAN (AN1-type zinc finger protein 3 OS=Homo sapiens GN=ZFAND3 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 51/197 (25.89%), Postives = 77/197 (39.09%), Query Frame = 1
Query:  238 PPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGS----IVNETSSSNGSESVAAATVDVQASSVEPKIISVQP----------------------SCASELSESVEAKPKEGP--------------------SRCSSCKKRVGLTGFK---CRCGNLYCVSHRYSDKHNCPFDYRTAARDAII 681
            PP  P      CGF+GS  TMN+CSKC+ D   KQ     A S+  S       ET+S N + S+   T+      +  ++    P                      SC ++     EA P + P                     RC  C+ ++ L   +   CRCG ++C+ HR  ++H+C FD+    R+  I
Sbjct:   15 PPRCP------CGFWGSSKTMNLCSKCFADFQKKQPDDDSAPSTSNSQSDLFSEETTSDNNNTSITTPTLSPSQQPLPTELNVTSPSKEECGPCTDTAHVSLITPTKRSCGTDSQSENEASPVKRPRLLENTERSEETSRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAI 205          
BLAST of FC875366 vs. ExPASy Swiss-Prot
Match: ZFAN3_XENLA (AN1-type zinc finger protein 3 homolog OS=Xenopus laevis GN=zfand3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 54/196 (27.55%), Postives = 79/196 (40.31%), Query Frame = 1
Query:  238 PPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGS----IVNETSSSNGSESVAAATVD-VQASSVEPKIIS--------------------VQPSCASELSESVEAKPKEGP--------------------SRCSSCKKRVGLTGFK---CRCGNLYCVSHRYSDKHNCPFDYRTAARDAII 681
            PP  P      CGF+GS  TMN+CSKC+ D   KQ     A S+  S      +ET S NG+ S+   TV+  Q    E  + S                     + SC S+     +  P + P                     RC  C+ ++ L   +   CRCG ++C+ HR  ++H+C FD+    R+  I
Sbjct:   15 PPRCP------CGFWGSSKTMNLCSKCFADFQKKQPDEDTAPSTSSSQSDLFPSETDSDNGNTSIPTPTVNPTQQLPTELNVDSPSKEDCGPCTDSAHVSLTTPSKRSCDSDSQSEDDTSPMKRPRLLDSGDRPDNSSRSKQKSRRRCFRCQIKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAI 204          
The following BLAST results are available for this feature:
BLAST of FC875366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
SAP10_ORYSJ1.148e-1531.51Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP15_ORYSJ4.825e-1460.00Zinc finger AN1 domain-containing stress-associate... [more]
SAP14_ORYSJ1.075e-1347.69Zinc finger AN1 domain-containing stress-associate... [more]
ZFAN3_RAT2.027e-1226.40AN1-type zinc finger protein 3 OS=Rattus norvegicu... [more]
ZFAN3_MOUSE2.648e-1226.40AN1-type zinc finger protein 3 OS=Mus musculus GN=... [more]
ZFAN3_HUMAN4.516e-1225.89AN1-type zinc finger protein 3 OS=Homo sapiens GN=... [more]
ZFAN3_XENLA1.006e-1127.55AN1-type zinc finger protein 3 homolog OS=Xenopus ... [more]

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Properties
Property NameValue
Genbank descriptionC31403B07EF CTVClemen1 Citrus clementina cDNA clone C31403B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875366 ID=FC875366; Name=FC875366; organism=Citrus clementina; type=EST; length=702bp
AGCCTTTTTAAAAATCCAAAGAGAGAGAGAGAGAGACACCCGGAAAGGGA
AACGAGGACGTCTCTAATCGGTTTTTGCCTGCTCTCTCCCCGTAGGCCGA
TCTGGTCCATTTAATTTTAGGGGCTCATTGGATGCTGGCTTGAGCTCGGG
GATCGGCTTAAGGGATTCATTGCTGTTTCTTCTGTTGCTCGCAGGGGTGG
TGAAAACATGGACCATGATGAGACTGGATGCCAAGCTCCTCCTGAGGGCC
CTATCTTGTGCATCAACAATTGTGGTTTCTTTGGAAGTGTGGCTACTATG
AATATGTGTTCCAAATGCTACAAGGATATAATGCTGAAACAGGATCAAGC
TAAGCTTGCTGCTTCATCTATTGGAAGCATTGTGAATGAAACGTCAAGCA
GCAATGGAAGTGAATCTGTTGCTGCTGCCACTGTTGATGTGCAAGCTAGT
TCAGTGGAGCCAAAAATCATCTCTGTGCAGCCATCATGTGCTTCAGAATT
GAGCGAGAGTGTGGAGGCAAAGCCGAAGGAGGGTCCCAGCCGGTGCAGCA
GTTGCAAGAAGCGTGTTGGTTTAACAGGATTCAAATGTCGCTGTGGTAAC
TTATACTGTGTGTCACATCGCTATTCGGACAAACATAACTGCCCCTTTGA
CTACCGCACTGCTGCTAGGGATGCTATAATTAAAGCAACCCTGTGATCAG
GC
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