FC875369

Overview
NameFC875369
Unique NameFC875369
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875369_ssr74 microsatellite FC875369_ssr74:74..85. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14202 contig Ccv1_Contig14202:3..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_MACFA (60S ribosomal protein L4 OS=Macaca fascicularis GN=RPL4 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 3.740e-65
Identity = 121/194 (62.37%), Postives = 144/194 (74.23%), Query Frame = 2
Query:   86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            RPLI+V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH IE VPE+PLVV D  E  +KT  A+ +LK++ A+ D +K   SQ +R GKGK
Sbjct:    5 RPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHSIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGK 195          

HSP 2 Score: 23.0978 bits (48), Expect = 3.740e-65
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  658 KG*MRNRRYISRKG 699
            KG MRNRR I R+G
Sbjct:  193 KGKMRNRRRIQRRG 206          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 3.743e-65
Identity = 118/194 (60.82%), Postives = 147/194 (75.77%), Query Frame = 2
Query:   86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            RPLI+V S +G+    +   V +P V +A IRPDIV FVH+N+ KN+RQPYAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+L+M++GH+IE +PE+PLVV D  ES +KT  A+ +LK++ A+ D +K   SQ +R GKGK
Sbjct:    9 RPLISVYSEKGE---SSGKNVTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGK 199          

HSP 2 Score: 23.0978 bits (48), Expect = 3.743e-65
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  658 KG*MRNRRYISRKG 699
            KG MRNRR I R+G
Sbjct:  197 KGKMRNRRRIQRRG 210          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_PONAB (60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 6.360e-65
Identity = 121/194 (62.37%), Postives = 144/194 (74.23%), Query Frame = 2
Query:   86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            RPLI+V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+ +LK++ A  D +K   SQ +R GKGK
Sbjct:    5 RPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKARNDIKKVYASQRMRAGKGK 195          

HSP 2 Score: 23.0978 bits (48), Expect = 6.360e-65
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  658 KG*MRNRRYISRKG 699
            KG MRNRR I R+G
Sbjct:  193 KGKMRNRRRIQRRG 206          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4A_SCHPO (60S ribosomal protein L4-A OS=Schizosaccharomyces pombe GN=rpl4a PE=1 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 3.412e-63
Identity = 114/194 (58.76%), Postives = 145/194 (74.74%), Query Frame = 2
Query:   86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            RP +++ S +G ++   S T+ LP V KA IRPD+V  VH+ ++KN RQPYAVS KAGHQTSAESWGTGRA++RIPRV GGGTHR+GQ AFGNMCR GRMFAPTK WR+WH K+N N+KRY           PSL++ARGH+IE +PE+PLVV D+ +S +KT  A+ +LK+I AY D  K  +S+ +R GKGK
Sbjct:    5 RPTVSIYSKDGSVS---SETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGK 195          

HSP 2 Score: 23.0978 bits (48), Expect = 3.412e-63
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  658 KG*MRNRRYISRKG 699
            KG +RNRR++ R+G
Sbjct:  193 KGKLRNRRHVQRRG 206          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4B_SCHPO (60S ribosomal protein L4-B OS=Schizosaccharomyces pombe GN=rpl4b PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 1.677e-62
Identity = 113/194 (58.25%), Postives = 145/194 (74.74%), Query Frame = 2
Query:   86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            RP +++ + +G ++   S T+ LP V KA IRPD+V  VH+ ++KN RQPYAVS KAGHQTSAESWGTGRA++RIPRV GGGTHR+GQ AFGNMCR GRMFAPTK WR+WH K+N N+KRY           PSL++ARGH+IE +PE+PLVV D+ +S +KT  A+ +LK+I AY D  K  +S+ +R GKGK
Sbjct:    5 RPTVSIYNKDGSVS---SETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGK 195          

HSP 2 Score: 23.0978 bits (48), Expect = 1.677e-62
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  658 KG*MRNRRYISRKG 699
            KG +RNRR++ R+G
Sbjct:  193 KGKLRNRRHVQRRG 206          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4B_YEAST (60S ribosomal protein L4-B OS=Saccharomyces cerevisiae GN=RPL4B PE=1 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 1.162e-60
Identity = 115/194 (59.28%), Postives = 142/194 (73.20%), Query Frame = 2
Query:   86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            RP +TV SL G+   +A   +PLP V  A IRPDIV  V ++++KN RQ YAVS KAGHQTSAESWGTGRAV+RIPRV GGGT R+GQGAFGNMCRGGRMFAPTK WR+W+ K+N N+KRY            SLV+ARGH++E +PE+PLVVS   ES++KT  A+  LK +GA++D  K   S+ +R GKGK
Sbjct:    3 RPQVTVHSLTGEATANA---LPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLKSKKLRAGKGK 193          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4A_YEAST (60S ribosomal protein L4-A OS=Saccharomyces cerevisiae GN=RPL4A PE=1 SV=4)

HSP 1 Score: 233.032 bits (593), Expect = 1.162e-60
Identity = 115/194 (59.28%), Postives = 142/194 (73.20%), Query Frame = 2
Query:   86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            RP +TV SL G+   +A   +PLP V  A IRPDIV  V ++++KN RQ YAVS KAGHQTSAESWGTGRAV+RIPRV GGGT R+GQGAFGNMCRGGRMFAPTK WR+W+ K+N N+KRY            SLV+ARGH++E +PE+PLVVS   ES++KT  A+  LK +GA++D  K   S+ +R GKGK
Sbjct:    3 RPQVTVHSLTGEATANA---LPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLKSKKLRAGKGK 193          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_DICDI (60S ribosomal protein L4 OS=Dictyostelium discoideum GN=rpl4 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.424e-58
Identity = 106/175 (60.57%), Postives = 135/175 (77.14%), Query Frame = 2
Query:  146 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVV-SDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            V LP+V+   IRPD+V FVH+N++KN+RQ Y  +  AG QTSAESWGTGRAV+RIPRVPG GTHR+GQGAFGNMCRGGRM+ P K WRRW+RK+NVNQKRY           P+LVMARGH+I  + E+PLV+ ++S ++++KT AA+++LK+I AYAD  K  DS+ IR G GK
Sbjct:   20 VKLPNVLTTPIRPDLVNFVHTNLNKNARQAYGAAPYAGEQTSAESWGTGRAVARIPRVPGSGTHRSGQGAFGNMCRGGRMYGPNKTWRRWNRKVNVNQKRYAVVSALAASAVPALVMARGHRINGINEVPLVIANESVDTLQKTKAAVELLKKINAYADVTKVIDSKHIRAGAGK 194          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_TRYBB (60S ribosomal protein L4 OS=Trypanosoma brucei brucei GN=RPL4 PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 8.881e-58
Identity = 110/194 (56.70%), Postives = 135/194 (69.59%), Query Frame = 2
Query:   86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            RP ++V S   D       T  LP V  A IR D+V FVH+N++KNSRQPYAV+R +G + S ESWGTGRAV+RIPR+ GGGT  +G GAFGNMCRGGRMFAPTKI+RRWHRKIN++QKR+           P+LVM+RGHKIE V E+PLVV D   + EKT  A+  LK +GA  D  +  DS+ IR G+GK
Sbjct:    4 RPSVSVYSASEDKVV---GTCSLPAVFTAPIRHDVVQFVHTNMAKNSRQPYAVNRLSGMKHSTESWGTGRAVARIPRIHGGGTSMSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVSALAASSLPALVMSRGHKIENVAEVPLVVEDGVRAYEKTKEAMTFLKTVGAIDDVNRVNDSRQIRAGRGK 194          

HSP 2 Score: 25.409 bits (54), Expect = 8.881e-58
Identity = 9/14 (64.29%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  658 KG*MRNRRYISRKG 699
            +G MRNRRY++R+G
Sbjct:  192 RGKMRNRRYVARRG 205          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_DROME (60S ribosomal protein L4 OS=Drosophila melanogaster GN=RpL4 PE=2 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.571e-57
Identity = 110/193 (56.99%), Postives = 139/193 (72.02%), Query Frame = 2
Query:   86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKG 664
            RPL++V + + + A D +  + LP V KA IRPD+V  VH  + +N+RQ YAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK +RRWHRK+NVNQ+RY           P+LV ++GH I+ V E PLVVSD  + V+KT  A+  L+++  +AD +K   SQ  R G+G
Sbjct:    7 RPLVSVYTEKNEPAKDKN--ICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVSAIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRG 197          
The following BLAST results are available for this feature:
BLAST of FC875369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
RL4_MACFA3.740e-6562.3760S ribosomal protein L4 OS=Macaca fascicularis GN... [more]
RL4A_XENLA3.743e-6560.8260S ribosomal protein L4-A OS=Xenopus laevis GN=rp... [more]
RL4_PONAB6.360e-6562.3760S ribosomal protein L4 OS=Pongo abelii GN=RPL4 P... [more]
RL4A_SCHPO3.412e-6358.7660S ribosomal protein L4-A OS=Schizosaccharomyces ... [more]
RL4B_SCHPO1.677e-6258.2560S ribosomal protein L4-B OS=Schizosaccharomyces ... [more]
RL4B_YEAST1.162e-6059.2860S ribosomal protein L4-B OS=Saccharomyces cerevi... [more]
RL4A_YEAST1.162e-6059.2860S ribosomal protein L4-A OS=Saccharomyces cerevi... [more]
RL4_DICDI2.424e-5860.5760S ribosomal protein L4 OS=Dictyostelium discoide... [more]
RL4_TRYBB8.881e-5856.7060S ribosomal protein L4 OS=Trypanosoma brucei bru... [more]
RL4_DROME1.571e-5756.9960S ribosomal protein L4 OS=Drosophila melanogaste... [more]

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Properties
Property NameValue
Genbank descriptionC31403B10EF CTVClemen1 Citrus clementina cDNA clone C31403B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875369 ID=FC875369; Name=FC875369; organism=Citrus clementina; type=EST; length=700bp
GGTCAATAAAACCCTAGCAACTCAACTCTCCCCCTTTCCCCATACCCCCC
CAAAAAAAAACAAAAAAGCTATGGCCGCCGCCGCCCGTCCTTTGATTACC
GTCCAGTCTTTGGAAGGTGACATGGCCACCGACGCAAGCTCCACCGTCCC
TTTGCCCGACGTCATGAAGGCCTCTATCCGACCCGACATCGTGGGCTTTG
TCCACTCTAACATCTCCAAGAACAGTCGCCAGCCTTACGCCGTTTCCAGG
AAGGCAGGGCACCAGACCTCCGCCGAATCATGGGGTACCGGTCGCGCCGT
CTCCCGTATTCCCCGTGTCCCCGGAGGCGGTACCCACCGTGCCGGCCAGG
GAGCCTTCGGTAACATGTGTCGCGGTGGTCGCATGTTCGCTCCCACAAAG
ATCTGGCGCCGATGGCACCGTAAGATCAACGTCAATCAGAAGCGATACGC
CATCGTTTCCGCCATTGCCGCCTCCGCTGTCCCCTCACTTGTGATGGCCC
GCGGTCACAAGATCGAGACTGTTCCGGAAATGCCCCTGGTCGTCAGTGAT
TCCGCCGAGAGTGTGGAGAAAACATCAGCTGCCCTTAAAGTTCTGAAGCA
GATCGGTGCATATGCTGACGCCGAGAAGGCGAAGGACAGCCAGGGGATTC
GCCCTGGAAAGGGTAAATGAGAAATAGGCGTTACATTTCTCGCAAGGGCC
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