FC875369
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_MACFA (60S ribosomal protein L4 OS=Macaca fascicularis GN=RPL4 PE=2 SV=1) HSP 1 Score: 246.899 bits (629), Expect = 3.740e-65 Identity = 121/194 (62.37%), Postives = 144/194 (74.23%), Query Frame = 2 Query: 86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667 RPLI+V S +G+ + V LP V KA IRPDIV FVH+N+ KN+RQPYAVS AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N QKRY P+LVM++GH IE VPE+PLVV D E +KT A+ +LK++ A+ D +K SQ +R GKGK Sbjct: 5 RPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHSIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGK 195 HSP 2 Score: 23.0978 bits (48), Expect = 3.740e-65 Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 1 Query: 658 KG*MRNRRYISRKG 699 KG MRNRR I R+G Sbjct: 193 KGKMRNRRRIQRRG 206
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1) HSP 1 Score: 246.899 bits (629), Expect = 3.743e-65 Identity = 118/194 (60.82%), Postives = 147/194 (75.77%), Query Frame = 2 Query: 86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667 RPLI+V S +G+ + V +P V +A IRPDIV FVH+N+ KN+RQPYAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N QKRY P+L+M++GH+IE +PE+PLVV D ES +KT A+ +LK++ A+ D +K SQ +R GKGK Sbjct: 9 RPLISVYSEKGE---SSGKNVTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGK 199 HSP 2 Score: 23.0978 bits (48), Expect = 3.743e-65 Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 1 Query: 658 KG*MRNRRYISRKG 699 KG MRNRR I R+G Sbjct: 197 KGKMRNRRRIQRRG 210
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_PONAB (60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1) HSP 1 Score: 246.128 bits (627), Expect = 6.360e-65 Identity = 121/194 (62.37%), Postives = 144/194 (74.23%), Query Frame = 2 Query: 86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667 RPLI+V S +G+ + V LP V KA IRPDIV FVH+N+ KN+RQPYAVS AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N QKRY P+LVM++GH+IE VPE+PLVV D E +KT A+ +LK++ A D +K SQ +R GKGK Sbjct: 5 RPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKARNDIKKVYASQRMRAGKGK 195 HSP 2 Score: 23.0978 bits (48), Expect = 6.360e-65 Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 1 Query: 658 KG*MRNRRYISRKG 699 KG MRNRR I R+G Sbjct: 193 KGKMRNRRRIQRRG 206
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4A_SCHPO (60S ribosomal protein L4-A OS=Schizosaccharomyces pombe GN=rpl4a PE=1 SV=2) HSP 1 Score: 240.35 bits (612), Expect = 3.412e-63 Identity = 114/194 (58.76%), Postives = 145/194 (74.74%), Query Frame = 2 Query: 86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667 RP +++ S +G ++ S T+ LP V KA IRPD+V VH+ ++KN RQPYAVS KAGHQTSAESWGTGRA++RIPRV GGGTHR+GQ AFGNMCR GRMFAPTK WR+WH K+N N+KRY PSL++ARGH+IE +PE+PLVV D+ +S +KT A+ +LK+I AY D K +S+ +R GKGK Sbjct: 5 RPTVSIYSKDGSVS---SETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGK 195 HSP 2 Score: 23.0978 bits (48), Expect = 3.412e-63 Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 1 Query: 658 KG*MRNRRYISRKG 699 KG +RNRR++ R+G Sbjct: 193 KGKLRNRRHVQRRG 206
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4B_SCHPO (60S ribosomal protein L4-B OS=Schizosaccharomyces pombe GN=rpl4b PE=2 SV=1) HSP 1 Score: 238.039 bits (606), Expect = 1.677e-62 Identity = 113/194 (58.25%), Postives = 145/194 (74.74%), Query Frame = 2 Query: 86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667 RP +++ + +G ++ S T+ LP V KA IRPD+V VH+ ++KN RQPYAVS KAGHQTSAESWGTGRA++RIPRV GGGTHR+GQ AFGNMCR GRMFAPTK WR+WH K+N N+KRY PSL++ARGH+IE +PE+PLVV D+ +S +KT A+ +LK+I AY D K +S+ +R GKGK Sbjct: 5 RPTVSIYNKDGSVS---SETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGK 195 HSP 2 Score: 23.0978 bits (48), Expect = 1.677e-62 Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 1 Query: 658 KG*MRNRRYISRKG 699 KG +RNRR++ R+G Sbjct: 193 KGKLRNRRHVQRRG 206
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4B_YEAST (60S ribosomal protein L4-B OS=Saccharomyces cerevisiae GN=RPL4B PE=1 SV=2) HSP 1 Score: 233.032 bits (593), Expect = 1.162e-60 Identity = 115/194 (59.28%), Postives = 142/194 (73.20%), Query Frame = 2 Query: 86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667 RP +TV SL G+ +A +PLP V A IRPDIV V ++++KN RQ YAVS KAGHQTSAESWGTGRAV+RIPRV GGGT R+GQGAFGNMCRGGRMFAPTK WR+W+ K+N N+KRY SLV+ARGH++E +PE+PLVVS ES++KT A+ LK +GA++D K S+ +R GKGK Sbjct: 3 RPQVTVHSLTGEATANA---LPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLKSKKLRAGKGK 193
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4A_YEAST (60S ribosomal protein L4-A OS=Saccharomyces cerevisiae GN=RPL4A PE=1 SV=4) HSP 1 Score: 233.032 bits (593), Expect = 1.162e-60 Identity = 115/194 (59.28%), Postives = 142/194 (73.20%), Query Frame = 2 Query: 86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667 RP +TV SL G+ +A +PLP V A IRPDIV V ++++KN RQ YAVS KAGHQTSAESWGTGRAV+RIPRV GGGT R+GQGAFGNMCRGGRMFAPTK WR+W+ K+N N+KRY SLV+ARGH++E +PE+PLVVS ES++KT A+ LK +GA++D K S+ +R GKGK Sbjct: 3 RPQVTVHSLTGEATANA---LPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLKSKKLRAGKGK 193
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_DICDI (60S ribosomal protein L4 OS=Dictyostelium discoideum GN=rpl4 PE=1 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 2.424e-58 Identity = 106/175 (60.57%), Postives = 135/175 (77.14%), Query Frame = 2 Query: 146 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVV-SDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667 V LP+V+ IRPD+V FVH+N++KN+RQ Y + AG QTSAESWGTGRAV+RIPRVPG GTHR+GQGAFGNMCRGGRM+ P K WRRW+RK+NVNQKRY P+LVMARGH+I + E+PLV+ ++S ++++KT AA+++LK+I AYAD K DS+ IR G GK Sbjct: 20 VKLPNVLTTPIRPDLVNFVHTNLNKNARQAYGAAPYAGEQTSAESWGTGRAVARIPRVPGSGTHRSGQGAFGNMCRGGRMYGPNKTWRRWNRKVNVNQKRYAVVSALAASAVPALVMARGHRINGINEVPLVIANESVDTLQKTKAAVELLKKINAYADVTKVIDSKHIRAGAGK 194
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_TRYBB (60S ribosomal protein L4 OS=Trypanosoma brucei brucei GN=RPL4 PE=3 SV=1) HSP 1 Score: 219.935 bits (559), Expect = 8.881e-58 Identity = 110/194 (56.70%), Postives = 135/194 (69.59%), Query Frame = 2 Query: 86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667 RP ++V S D T LP V A IR D+V FVH+N++KNSRQPYAV+R +G + S ESWGTGRAV+RIPR+ GGGT +G GAFGNMCRGGRMFAPTKI+RRWHRKIN++QKR+ P+LVM+RGHKIE V E+PLVV D + EKT A+ LK +GA D + DS+ IR G+GK Sbjct: 4 RPSVSVYSASEDKVV---GTCSLPAVFTAPIRHDVVQFVHTNMAKNSRQPYAVNRLSGMKHSTESWGTGRAVARIPRIHGGGTSMSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVSALAASSLPALVMSRGHKIENVAEVPLVVEDGVRAYEKTKEAMTFLKTVGAIDDVNRVNDSRQIRAGRGK 194 HSP 2 Score: 25.409 bits (54), Expect = 8.881e-58 Identity = 9/14 (64.29%), Postives = 13/14 (92.86%), Query Frame = 1 Query: 658 KG*MRNRRYISRKG 699 +G MRNRRY++R+G Sbjct: 192 RGKMRNRRYVARRG 205
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_DROME (60S ribosomal protein L4 OS=Drosophila melanogaster GN=RpL4 PE=2 SV=2) HSP 1 Score: 222.631 bits (566), Expect = 1.571e-57 Identity = 110/193 (56.99%), Postives = 139/193 (72.02%), Query Frame = 2 Query: 86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKG 664 RPL++V + + + A D + + LP V KA IRPD+V VH + +N+RQ YAVS AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK +RRWHRK+NVNQ+RY P+LV ++GH I+ V E PLVVSD + V+KT A+ L+++ +AD +K SQ R G+G Sbjct: 7 RPLVSVYTEKNEPAKDKN--ICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVSAIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRG 197 The following BLAST results are available for this feature:
BLAST of FC875369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 68
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875369 ID=FC875369; Name=FC875369; organism=Citrus clementina; type=EST; length=700bpback to top |