FC875369

Overview
NameFC875369
Unique NameFC875369
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875369_ssr74 microsatellite FC875369_ssr74:74..85. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14202 contig Ccv1_Contig14202:3..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_CAEEL (60S ribosomal protein L4 OS=Caenorhabditis elegans GN=rpl-4 PE=1 SV=3)

HSP 1 Score: 206.838 bits (525), Expect = 8.920e-53
Identity = 104/194 (53.61%), Postives = 131/194 (67.53%), Query Frame = 2
Query:   86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            RPL+TV   + +      S + LP V +  IRPD+V F+   + +N RQ +AV+ KAG Q SAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGG MFAP K++RRWHR +N+ QKRY           P+L+ ARGH I+ V E+PLVVSD  ES  KT  A+  L++   +AD EK  +S+  R GKGK
Sbjct:    4 RPLVTVYDEKYEAT---QSQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGK 194          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_ENTHI (60S ribosomal protein L4 (Fragments) OS=Entamoeba histolytica GN=RPL4 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.266e-29
Identity = 70/147 (47.62%), Postives = 89/147 (60.54%), Query Frame = 2
Query:  251 KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLV--------VSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            KAG Q SA SWGTGRAV+RIPR+ G G+ R GQGAFGNM R G MF+P K +R+W RK     +R+           P+LV ARGH I  VP++P V         S S   ++KT  A+ +LK+I AY+D  K   S+ IR G+GK
Sbjct:    3 KAGKQHSAISWGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVASCIAASAVPALVSARGHHIAGVPQLPSVSFLQPQFHSSKSISVIKKTKQAVYLLKKINAYSDVLKVIASKTIRAGQGK 149          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_METKA (50S ribosomal protein L4P OS=Methanopyrus kandleri GN=rpl4p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 68/190 (35.79%), Postives = 97/190 (51.05%), Query Frame = 2
Query:  101 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGG-RMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            V +LEG+       TV LP   +  +R D++         N RQPY    +AG +TSAESWG G  V+ +PRV G     AG+ A      GG +  APT   + W +++N  ++R            P  V  RGH I+ VP +P+VV D  +S+ K     +  K +G +AD E+AK ++ IR GKGK
Sbjct:    5 VFNLEGEEV----DTVELPSFFEEPVRKDLIRRAVLAAQANRRQPYGTDPRAGFRTSAESWGAGHGVAMVPRVKGRRHPAAGRAARVAQAVGGQKAHAPTP-EKDWTQRVNRKERRAALRSALAATAKPEFVKERGHVIDDVPHLPVVVVDELKSLNKAREVREFFKSVGLWADVERAKSNRRIRAGKGK 189          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_METTH (50S ribosomal protein L4P OS=Methanobacterium thermoautotrophicum GN=rpl4p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.905e-24
Identity = 63/191 (32.98%), Postives = 99/191 (51.83%), Query Frame = 2
Query:   95 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            I V SLEG+    A   + LP++     RPD++     +      QP+     AG +TSA+S+G GR V+ +PR+  G      + AF     GGR   P +  + +H +IN  ++R              LV ARGH+IE VP++PLVV D    +++T+   +V +++G   D  +A++ + IR GKGK
Sbjct:    3 IKVYSLEGE----AIDEMELPEIFNEEFRPDVIKRAVLSAQTARVQPWGPDPMAGKRTSAQSYGAGRGVAMVPRIKNGS-----RAAFVPQAVGGRRAHPPRPQKNYHERINRKERRLAIRSAVAATARKDLVEARGHRIENVPQLPLVVDDELSMIKRTADTREVFRKLGIMDDIVRAREGKKIRAGKGK 184          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_METS3 (50S ribosomal protein L4P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.484e-23
Identity = 58/189 (30.69%), Postives = 98/189 (51.85%), Query Frame = 2
Query:  101 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            V S+EG++  +    + LP +     RPD++     +      QP+    +AG +TSA+ WG+GR  +R+PR+  G      + AF  M  GGR   PT+  +  H KIN+ ++R+             LV  RGH++  + ++P++V D   SV+ T    ++ + +G Y D  +AK+ + IR G+GK
Sbjct:    5 VYSMEGEVKEE----IELPAIFNEEYRPDLIKRAVISAQTARVQPWGNDPEAGKRTSAKGWGSGRGTARVPRIKNGS-----KAAFVPMAVGGRRAHPTRAEKNHHEKINIKERRFAIRSAVAATANKELVENRGHRLGDLEQVPIIVEDDICSVKTTKQTREIFQNLGVYDDITRAKEGKRIRAGRGK 184          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_HALWD (50S ribosomal protein L4P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.389e-21
Identity = 62/190 (32.63%), Postives = 94/190 (49.47%), Query Frame = 2
Query:   98 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            T+ +L GD A     T+ LP V +   RPD++         N +QPY     AG +T AES+G+GR ++ +PR   G   R  Q         GR   P K  +   + +N  +++            PS V  RGH+ E   E+PLVVSD  E + KT   + VL+ +G +AD  ++ +++ IR G+GK
Sbjct:    4 TIHNLNGDKA----DTLELPAVFETPYRPDVIERAVVAAQANRKQPYGADPYAGMRTPAESFGSGRGMAHVPR-ENGQARRVPQAV------SGRKAHPPKAEKDQSKSVNTKERKLAFQSAVAATADPSQVEERGHQFENDVELPLVVSDEFEELIKTQEVVDVLESLGVHADIVRSDENKSIRAGRGK 182          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_METST (50S ribosomal protein L4P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.094e-21
Identity = 57/191 (29.84%), Postives = 96/191 (50.26%), Query Frame = 2
Query:   95 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            I V SL+GD+  +    + LP++ +   RPD++     ++     QP+     AG +T+AES+G+GR  + +PRV G     + + AF     GGR   P ++   +H KIN  ++               LV  RGH++  + ++P V+ D  E+V+ T    ++ K +G   D  +AK  + I+ GKGK
Sbjct:    4 INVYSLKGDITEE----IELPEIFEEEYRPDVIKRAVISMQTARIQPWGTDPMAGKRTTAESFGSGRGAAMVPRVKG-----SSKAAFVPQAIGGRKAHPPRVNTIYHEKINKKERTLAIRSAIAATANKELVEQRGHQVSELEQIPFVIDDEIETVKTTKETREIFKDLGIMDDIVRAKKGRKIKSGKGK 185          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_METMP (50S ribosomal protein L4P OS=Methanococcus maripaludis GN=rpl4p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.041e-21
Identity = 68/191 (35.60%), Postives = 93/191 (48.69%), Query Frame = 2
Query:   95 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            + V +L+G    D    + LP V +A  RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  +K             P +V ARGHKIE VP +PLVV+   ES+ KT   L+V K +   AD E+AKD   IR G+GK
Sbjct:    3 VKVYNLDGSEKGD----IELPAVFEAEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASANPEIVSARGHKIEGVPSLPLVVNAEFESLVKTKEVLEVFKTLKLDADLERAKDGVKIRAGRGK 183          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_METMJ (50S ribosomal protein L4P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.041e-21
Identity = 61/188 (32.45%), Postives = 96/188 (51.06%), Query Frame = 2
Query:  101 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKG 664
            V++L G++A +    + LP++ +   RPD++      +     QP+  +  AG +TSAESWG+GR  +++PR+  G      + A      GGR   P K+ +   ++IN  +KR            P LV  RGH  E   ++PLV  D  E V +T   +  L  +G YAD E+AK S+ +R G+G
Sbjct:    5 VRTLTGEIAHE----IDLPEIFREEYRPDLIKRAVLALQSTRFQPHGTNPYAGMRTSAESWGSGRGAAQVPRLKNG-----SRVARVPQATGGRAAHPPKVEKILVKEINRKEKRKALRSAVAASTYPDLVRERGHLFE--GDLPLVFEDRFEEVTRTGDVIAALTALGVYADVERAKGSRKVRAGRG 181          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_PYRAE (50S ribosomal protein L4P OS=Pyrobaculum aerophilum GN=rpl4p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.894e-21
Identity = 58/164 (35.37%), Postives = 83/164 (50.61%), Query Frame = 2
Query:  176 IRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            IRPD++   + +      QP  V   AG + S ES+G G  ++RIPR  G    R   G F    RGGR   P K+ ++ H +IN  +K+             S V ARGH +E VP +P+VV   AE + +   A K+ + +G + D E+A +   IR GKGK
Sbjct:   52 IRPDLIRRAYLSALSARFQPKGVYEGAGKEHSCESFGVGLGIARIPRYKGSLWPR---GCFAPNTRGGRRAHPPKVEKKLHEEINKKEKKLAIRSAIAATAYRSWVAARGHVVEKVPSLPVVVVGDAEKINRAKEAKKLFEALGLWPDVERAAEGVKIRAGKGK 212          
The following BLAST results are available for this feature:
BLAST of FC875369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
RL4_CAEEL8.920e-5353.6160S ribosomal protein L4 OS=Caenorhabditis elegans... [more]
RL4_ENTHI5.266e-2947.6260S ribosomal protein L4 (Fragments) OS=Entamoeba ... [more]
RL4_METKA6.025e-2535.7950S ribosomal protein L4P OS=Methanopyrus kandleri... [more]
RL4_METTH3.905e-2432.9850S ribosomal protein L4P OS=Methanobacterium ther... [more]
RL4_METS31.484e-2330.6950S ribosomal protein L4P OS=Methanobrevibacter sm... [more]
RL4_HALWD1.389e-2132.6350S ribosomal protein L4P OS=Haloquadratum walsbyi... [more]
RL4_METST3.094e-2129.8450S ribosomal protein L4P OS=Methanosphaera stadtm... [more]
RL4_METMP4.041e-2135.6050S ribosomal protein L4P OS=Methanococcus maripal... [more]
RL4_METMJ4.041e-2132.4550S ribosomal protein L4P OS=Methanoculleus marisn... [more]
RL4_PYRAE6.894e-2135.3750S ribosomal protein L4P OS=Pyrobaculum aerophilu... [more]

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Properties
Property NameValue
Genbank descriptionC31403B10EF CTVClemen1 Citrus clementina cDNA clone C31403B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875369 ID=FC875369; Name=FC875369; organism=Citrus clementina; type=EST; length=700bp
GGTCAATAAAACCCTAGCAACTCAACTCTCCCCCTTTCCCCATACCCCCC
CAAAAAAAAACAAAAAAGCTATGGCCGCCGCCGCCCGTCCTTTGATTACC
GTCCAGTCTTTGGAAGGTGACATGGCCACCGACGCAAGCTCCACCGTCCC
TTTGCCCGACGTCATGAAGGCCTCTATCCGACCCGACATCGTGGGCTTTG
TCCACTCTAACATCTCCAAGAACAGTCGCCAGCCTTACGCCGTTTCCAGG
AAGGCAGGGCACCAGACCTCCGCCGAATCATGGGGTACCGGTCGCGCCGT
CTCCCGTATTCCCCGTGTCCCCGGAGGCGGTACCCACCGTGCCGGCCAGG
GAGCCTTCGGTAACATGTGTCGCGGTGGTCGCATGTTCGCTCCCACAAAG
ATCTGGCGCCGATGGCACCGTAAGATCAACGTCAATCAGAAGCGATACGC
CATCGTTTCCGCCATTGCCGCCTCCGCTGTCCCCTCACTTGTGATGGCCC
GCGGTCACAAGATCGAGACTGTTCCGGAAATGCCCCTGGTCGTCAGTGAT
TCCGCCGAGAGTGTGGAGAAAACATCAGCTGCCCTTAAAGTTCTGAAGCA
GATCGGTGCATATGCTGACGCCGAGAAGGCGAAGGACAGCCAGGGGATTC
GCCCTGGAAAGGGTAAATGAGAAATAGGCGTTACATTTCTCGCAAGGGCC
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