FC875369

Overview
NameFC875369
Unique NameFC875369
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875369_ssr74 microsatellite FC875369_ssr74:74..85. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14202 contig Ccv1_Contig14202:3..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_PYRFU (50S ribosomal protein L4P OS=Pyrococcus furiosus GN=rpl4p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 54/174 (31.03%), Postives = 83/174 (47.70%), Query Frame = 2
Query:  146 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            + LP V     RPD++         +  QP      AG +   E+ G G +++R+ R+     +     AF    RGGR   P K+ +     IN  +KR              LV ARGH I+ VP++PL+V D  + V+KT    ++ K++G + D  +AK+  G+R GKGK
Sbjct:   16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHSMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEDINKKEKRLALMSAIAATANYDLVRARGHIIDNVPQLPLIVVDDLQKVQKTRETREIFKKLGIWDDIVRAKEKSGVRAGKGK 185          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_PYRAB (50S ribosomal protein L4P OS=Pyrococcus abyssi GN=rpl4p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 54/174 (31.03%), Postives = 82/174 (47.13%), Query Frame = 2
Query:  146 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            + LP V     RPD++         +  QP      AG +   E+ G G  ++R+ R+     +     AF    RGGR   P K+ +     IN  ++R              +V ARGH I+ VP++PL+V D  + V KT    ++ K++G + D E+AK+  GIR GKGK
Sbjct:   16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRAGKGK 185          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_THESM (50S ribosomal protein L4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 57/191 (29.84%), Postives = 90/191 (47.12%), Query Frame = 2
Query:   95 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            + V SL G+   +    + LP V +   RPD++         +  QP      AG +   E+ G GR ++R+ R+           AF    RGGR   P K+ +     IN  +K+              LV ARGH I+ +P++PLVV +  E V +T+   ++ K++G + D E+AK +  +R GKGK
Sbjct:    3 VKVFSLNGEPIEE----ITLPKVFQTPFRPDLIKRAVIASWTHRIQPQGRDPLAGKRRVTENIGKGRGMARVERIKTSPRF----AAFVPFARGGRRAHPPKVEKVIWEGINKKEKKLALMSAIAATANYDLVRARGHVIDNIPQVPLVVENELEKVYRTAQTREIFKKLGIWEDIERAKRNTKVRAGKGK 185          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_THEON (50S ribosomal protein L4P OS=Thermococcus onnurineus (strain NA1) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 58/191 (30.37%), Postives = 90/191 (47.12%), Query Frame = 2
Query:   95 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            + V +LEG+   +    + LP+V     RPD++         +  QP      AG +   E+ G G  ++R+ R+           AF    RGGR   P K+ +     IN  ++R              LV ARGH ++ VP++PLVV +  E V KT+   ++ K++G + D E+AK +  IR GKGK
Sbjct:    3 VKVFNLEGEPVEE----IELPNVFATPFRPDLIRRAVIASWTHRIQPQGRDPLAGKRRVTENIGKGHGMARVERIKTSPRF----AAFVPFARGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANYDLVRARGHIVDNVPQVPLVVVNDLEKVFKTAQTREIFKKLGVWDDIERAKKNTKIRAGKGK 185          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_PYRHO (50S ribosomal protein L4P OS=Pyrococcus horikoshii GN=rpl4p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16
Identity = 51/174 (29.31%), Postives = 82/174 (47.13%), Query Frame = 2
Query:  146 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            + LP V     RPD++         +  QP      AG +   E+ G G  ++R+ R+     +     AF    RGGR   P K+ +     IN  ++R              +V +RGH ++ VP++PL+V D  + V KT    ++ K++G + D E+AK+  G+R GKGK
Sbjct:   16 IELPRVFLTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKTPPRY----AAFVPFARGGRRAHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKSRGHIVDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWEDIERAKEKSGVRAGKGK 185          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_NATPD (50S ribosomal protein L4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 59/189 (31.22%), Postives = 87/189 (46.03%), Query Frame = 2
Query:   98 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKG 664
            TV+ L+GD A +    V LP V +   RPD++         N  Q       AG +T AES G+GR ++ +PR   G      Q         GR   P K  +     IN  +++               V  RGH+ +   ++PLVVSD  E + KT  A+ VL+ +G Y D E+A+D + +R G+G
Sbjct:    4 TVRDLDGDDAGE----VELPAVFETDYRPDLIKRAVLAAQANRIQDTGTDEYAGLRTPAESPGSGRGMAHVPR-QNGRAREVPQAV------SGRPAHPPKAEKDRGLDINTKERKLATRSAIAATANADRVEERGHEFDEETDLPLVVSDEFEDLVKTQEAVDVLEALGVYDDIERAEDGKTVRAGRG 181          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_PYRKO (50S ribosomal protein L4P OS=Pyrococcus kodakaraensis GN=rpl4p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.139e-15
Identity = 56/191 (29.32%), Postives = 89/191 (46.60%), Query Frame = 2
Query:   95 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            + V +LEG+   +    + LP V     RPD++         +  QP     +AG +   E+ G G  ++R+ R+           AF     GGR   P K+ +     IN  ++R              LV ARGH ++ V ++PLVV+D  + V KT+   ++ K++G + D E+AK +  IR GKGK
Sbjct:    3 VKVFNLEGEPVEE----IELPKVFSTPFRPDLIRRAVIASWTHRIQPQGRDPQAGKRRVTENIGKGHGMARVERIKTSPRF----AAFVPFAVGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANYDLVRARGHVVDNVVQIPLVVTDDLQKVFKTAQTREIFKKLGVWDDIERAKKNTKIRAGKGK 185          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_SULIY (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.537e-15
Identity = 53/174 (30.46%), Postives = 83/174 (47.70%), Query Frame = 2
Query:  146 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            V LP +    +R DI+  V      +S QP      AG +TSAES+G    ++R+PRV       +G+ A      GGR+  P  + ++   ++N  +K+               V ARGH  +     P+VV+D   S++  S   + L++IG Y D ++ K+   IR GKGK
Sbjct:   23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGK 191          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_SULIN (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.537e-15
Identity = 53/174 (30.46%), Postives = 83/174 (47.70%), Query Frame = 2
Query:  146 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            V LP +    +R DI+  V      +S QP      AG +TSAES+G    ++R+PRV       +G+ A      GGR+  P  + ++   ++N  +K+               V ARGH  +     P+VV+D   S++  S   + L++IG Y D ++ K+   IR GKGK
Sbjct:   23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGK 191          
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_SULIM (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.537e-15
Identity = 53/174 (30.46%), Postives = 83/174 (47.70%), Query Frame = 2
Query:  146 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            V LP +    +R DI+  V      +S QP      AG +TSAES+G    ++R+PRV       +G+ A      GGR+  P  + ++   ++N  +K+               V ARGH  +     P+VV+D   S++  S   + L++IG Y D ++ K+   IR GKGK
Sbjct:   23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGK 191          
The following BLAST results are available for this feature:
BLAST of FC875369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
RL4_PYRFU4.624e-1731.0350S ribosomal protein L4P OS=Pyrococcus furiosus G... [more]
RL4_PYRAB7.887e-1731.0350S ribosomal protein L4P OS=Pyrococcus abyssi GN=... [more]
RL4_THESM1.030e-1629.8450S ribosomal protein L4P OS=Thermococcus sibiricu... [more]
RL4_THEON1.030e-1630.3750S ribosomal protein L4P OS=Thermococcus onnurine... [more]
RL4_PYRHO1.757e-1629.3150S ribosomal protein L4P OS=Pyrococcus horikoshii... [more]
RL4_NATPD2.997e-1631.2250S ribosomal protein L4P OS=Natronomonas pharaoni... [more]
RL4_PYRKO1.139e-1529.3250S ribosomal protein L4P OS=Pyrococcus kodakaraen... [more]
RL4_SULIY2.537e-1530.4650S ribosomal protein L4P OS=Sulfolobus islandicus... [more]
RL4_SULIN2.537e-1530.4650S ribosomal protein L4P OS=Sulfolobus islandicus... [more]
RL4_SULIM2.537e-1530.4650S ribosomal protein L4P OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionC31403B10EF CTVClemen1 Citrus clementina cDNA clone C31403B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875369 ID=FC875369; Name=FC875369; organism=Citrus clementina; type=EST; length=700bp
GGTCAATAAAACCCTAGCAACTCAACTCTCCCCCTTTCCCCATACCCCCC
CAAAAAAAAACAAAAAAGCTATGGCCGCCGCCGCCCGTCCTTTGATTACC
GTCCAGTCTTTGGAAGGTGACATGGCCACCGACGCAAGCTCCACCGTCCC
TTTGCCCGACGTCATGAAGGCCTCTATCCGACCCGACATCGTGGGCTTTG
TCCACTCTAACATCTCCAAGAACAGTCGCCAGCCTTACGCCGTTTCCAGG
AAGGCAGGGCACCAGACCTCCGCCGAATCATGGGGTACCGGTCGCGCCGT
CTCCCGTATTCCCCGTGTCCCCGGAGGCGGTACCCACCGTGCCGGCCAGG
GAGCCTTCGGTAACATGTGTCGCGGTGGTCGCATGTTCGCTCCCACAAAG
ATCTGGCGCCGATGGCACCGTAAGATCAACGTCAATCAGAAGCGATACGC
CATCGTTTCCGCCATTGCCGCCTCCGCTGTCCCCTCACTTGTGATGGCCC
GCGGTCACAAGATCGAGACTGTTCCGGAAATGCCCCTGGTCGTCAGTGAT
TCCGCCGAGAGTGTGGAGAAAACATCAGCTGCCCTTAAAGTTCTGAAGCA
GATCGGTGCATATGCTGACGCCGAGAAGGCGAAGGACAGCCAGGGGATTC
GCCCTGGAAAGGGTAAATGAGAAATAGGCGTTACATTTCTCGCAAGGGCC
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