FC875369
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_PYRFU (50S ribosomal protein L4P OS=Pyrococcus furiosus GN=rpl4p PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17 Identity = 54/174 (31.03%), Postives = 83/174 (47.70%), Query Frame = 2 Query: 146 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667 + LP V RPD++ + QP AG + E+ G G +++R+ R+ + AF RGGR P K+ + IN +KR LV ARGH I+ VP++PL+V D + V+KT ++ K++G + D +AK+ G+R GKGK Sbjct: 16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHSMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEDINKKEKRLALMSAIAATANYDLVRARGHIIDNVPQLPLIVVDDLQKVQKTRETREIFKKLGIWDDIVRAKEKSGVRAGKGK 185
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_PYRAB (50S ribosomal protein L4P OS=Pyrococcus abyssi GN=rpl4p PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17 Identity = 54/174 (31.03%), Postives = 82/174 (47.13%), Query Frame = 2 Query: 146 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667 + LP V RPD++ + QP AG + E+ G G ++R+ R+ + AF RGGR P K+ + IN ++R +V ARGH I+ VP++PL+V D + V KT ++ K++G + D E+AK+ GIR GKGK Sbjct: 16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRAGKGK 185
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_THESM (50S ribosomal protein L4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl4p PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16 Identity = 57/191 (29.84%), Postives = 90/191 (47.12%), Query Frame = 2 Query: 95 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667 + V SL G+ + + LP V + RPD++ + QP AG + E+ G GR ++R+ R+ AF RGGR P K+ + IN +K+ LV ARGH I+ +P++PLVV + E V +T+ ++ K++G + D E+AK + +R GKGK Sbjct: 3 VKVFSLNGEPIEE----ITLPKVFQTPFRPDLIKRAVIASWTHRIQPQGRDPLAGKRRVTENIGKGRGMARVERIKTSPRF----AAFVPFARGGRRAHPPKVEKVIWEGINKKEKKLALMSAIAATANYDLVRARGHVIDNIPQVPLVVENELEKVYRTAQTREIFKKLGIWEDIERAKRNTKVRAGKGK 185
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_THEON (50S ribosomal protein L4P OS=Thermococcus onnurineus (strain NA1) GN=rpl4p PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16 Identity = 58/191 (30.37%), Postives = 90/191 (47.12%), Query Frame = 2 Query: 95 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667 + V +LEG+ + + LP+V RPD++ + QP AG + E+ G G ++R+ R+ AF RGGR P K+ + IN ++R LV ARGH ++ VP++PLVV + E V KT+ ++ K++G + D E+AK + IR GKGK Sbjct: 3 VKVFNLEGEPVEE----IELPNVFATPFRPDLIRRAVIASWTHRIQPQGRDPLAGKRRVTENIGKGHGMARVERIKTSPRF----AAFVPFARGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANYDLVRARGHIVDNVPQVPLVVVNDLEKVFKTAQTREIFKKLGVWDDIERAKKNTKIRAGKGK 185
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_PYRHO (50S ribosomal protein L4P OS=Pyrococcus horikoshii GN=rpl4p PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16 Identity = 51/174 (29.31%), Postives = 82/174 (47.13%), Query Frame = 2 Query: 146 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667 + LP V RPD++ + QP AG + E+ G G ++R+ R+ + AF RGGR P K+ + IN ++R +V +RGH ++ VP++PL+V D + V KT ++ K++G + D E+AK+ G+R GKGK Sbjct: 16 IELPRVFLTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKTPPRY----AAFVPFARGGRRAHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKSRGHIVDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWEDIERAKEKSGVRAGKGK 185
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_NATPD (50S ribosomal protein L4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl4p PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16 Identity = 59/189 (31.22%), Postives = 87/189 (46.03%), Query Frame = 2 Query: 98 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKG 664 TV+ L+GD A + V LP V + RPD++ N Q AG +T AES G+GR ++ +PR G Q GR P K + IN +++ V RGH+ + ++PLVVSD E + KT A+ VL+ +G Y D E+A+D + +R G+G Sbjct: 4 TVRDLDGDDAGE----VELPAVFETDYRPDLIKRAVLAAQANRIQDTGTDEYAGLRTPAESPGSGRGMAHVPR-QNGRAREVPQAV------SGRPAHPPKAEKDRGLDINTKERKLATRSAIAATANADRVEERGHEFDEETDLPLVVSDEFEDLVKTQEAVDVLEALGVYDDIERAEDGKTVRAGRG 181
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_PYRKO (50S ribosomal protein L4P OS=Pyrococcus kodakaraensis GN=rpl4p PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.139e-15 Identity = 56/191 (29.32%), Postives = 89/191 (46.60%), Query Frame = 2 Query: 95 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667 + V +LEG+ + + LP V RPD++ + QP +AG + E+ G G ++R+ R+ AF GGR P K+ + IN ++R LV ARGH ++ V ++PLVV+D + V KT+ ++ K++G + D E+AK + IR GKGK Sbjct: 3 VKVFNLEGEPVEE----IELPKVFSTPFRPDLIRRAVIASWTHRIQPQGRDPQAGKRRVTENIGKGHGMARVERIKTSPRF----AAFVPFAVGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANYDLVRARGHVVDNVVQIPLVVTDDLQKVFKTAQTREIFKKLGVWDDIERAKKNTKIRAGKGK 185
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_SULIY (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl4p PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.537e-15 Identity = 53/174 (30.46%), Postives = 83/174 (47.70%), Query Frame = 2 Query: 146 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667 V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV +G+ A GGR+ P + ++ ++N +K+ V ARGH + P+VV+D S++ S + L++IG Y D ++ K+ IR GKGK Sbjct: 23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGK 191
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_SULIN (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl4p PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.537e-15 Identity = 53/174 (30.46%), Postives = 83/174 (47.70%), Query Frame = 2 Query: 146 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667 V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV +G+ A GGR+ P + ++ ++N +K+ V ARGH + P+VV+D S++ S + L++IG Y D ++ K+ IR GKGK Sbjct: 23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGK 191
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_SULIM (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl4p PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.537e-15 Identity = 53/174 (30.46%), Postives = 83/174 (47.70%), Query Frame = 2 Query: 146 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667 V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV +G+ A GGR+ P + ++ ++N +K+ V ARGH + P+VV+D S++ S + L++IG Y D ++ K+ IR GKGK Sbjct: 23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGK 191 The following BLAST results are available for this feature:
BLAST of FC875369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 68
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875369 ID=FC875369; Name=FC875369; organism=Citrus clementina; type=EST; length=700bpback to top |