FC875369
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_SULIK (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl4p PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.537e-15 Identity = 53/174 (30.46%), Postives = 83/174 (47.70%), Query Frame = 2 Query: 146 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667 V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV +G+ A GGR+ P + ++ ++N +K+ V ARGH + P+VV+D S++ S + L++IG Y D ++ K+ IR GKGK Sbjct: 23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGK 191
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_SULIA (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl4p PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.537e-15 Identity = 53/174 (30.46%), Postives = 83/174 (47.70%), Query Frame = 2 Query: 146 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667 V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV +G+ A GGR+ P + ++ ++N +K+ V ARGH + P+VV+D S++ S + L++IG Y D ++ K+ IR GKGK Sbjct: 23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGK 191
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_THEVO (50S ribosomal protein L4P OS=Thermoplasma volcanium GN=rpl4p PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.314e-15 Identity = 51/191 (26.70%), Postives = 89/191 (46.60%), Query Frame = 2 Query: 95 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667 + + S+ G+ + + LP++ S+R D++ IS + RQPY S AG + + G +SR+PR+ GG A G G+ + ++ + IN +++ V RGH+ +P+VV D+ ++KT A+ +LK IG Y D ++K+ + IR G+GK Sbjct: 5 VPIYSINGEKRGE----IDLPEIFNYSVREDLIRKAFRAISLSLRQPYGSSPLAGLRRVGHTTKPGLGISRMPRIAGGSRVVGIASAVG-----GKSAHSPRSTKKLYVGINEKERKMAKFSAIAMTASADAVRKRGHRFSESLPLPVVVEDAVSGIKKTKDAVNLLKSIGLYEDILRSKEGKHIRAGRGK 186
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_SULIL (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl4p PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.382e-15 Identity = 53/174 (30.46%), Postives = 82/174 (47.13%), Query Frame = 2 Query: 146 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667 V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV +G+ A GGR+ P + ++ + N +K+ V ARGH + P+VV+D S++ S + L++IG Y D ++ K+ IR GKGK Sbjct: 23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEANDKEKQLAVISALSATADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGK 191
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_METJA (50S ribosomal protein L4P OS=Methanocaldococcus jannaschii GN=rpl4p PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 9.642e-15 Identity = 54/179 (30.17%), Postives = 81/179 (45.25%), Query Frame = 2 Query: 131 DASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667 +A + LP V + RPD++ + QP AG +TSA++ G G +R+ RVP G R Q GGR P K+ + ++N ++ P LV RGH ET +P++V S E ++KT V +++G D +AK+ IR GKGK Sbjct: 11 EAVKEIDLPAVFEEEYRPDLIKRAFLSAFTARLQPKGSDPLAGLRTSAKNIGKGHGRARVDRVPQGWAARVPQAV------GGRRAHPPKVEKILWERVNKKERIKAIKSAIAATANPELVKERGHVFET-ENLPIIVESSFEELQKTKDVFAVFEKLGISDDVIRAKNGIKIRAGKGK 182
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_AERPE (50S ribosomal protein L4P OS=Aeropyrum pernix GN=rpl4p PE=3 SV=3) HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14 Identity = 52/176 (29.55%), Postives = 81/176 (46.02%), Query Frame = 2 Query: 143 TVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSA-ESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667 +V LP + + +R D++ + QP AG +TSA S G GR V+R+PR+ G + + A NM RGGR P ++ + IN +KR LV RGH+ + +P+V+ S + A +L+ +G Y D +AK+ + GKGK Sbjct: 28 SVVLPQIFRFPVRKDLIRRAFLSEFTARLQPKGRDPMAGKRTSAVSLGVGRGVARVPRIKG-----SLRAALVNMARGGRAAHPPRVEKVLKEYINKKEKRLATISAISATSREDLVRQRGHRF-SAETLPIVLDSSVLAKISTAREARSLLESVGVYEDVLRAKEGKRYNAGKGK 197
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_SULTO (50S ribosomal protein L4P OS=Sulfolobus tokodaii GN=rpl4p PE=3 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 1.392e-13 Identity = 49/183 (26.78%), Postives = 84/183 (45.90%), Query Frame = 2 Query: 119 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667 D+ + + LP +R D++ V + + QP AG +TSA S+G ++R+PRV G+ A GGR+ P + ++ ++N +K+ + V RGH + ++ +P++V D + KT ++VL+ + Y D E+ KD IR GKGK Sbjct: 14 DLKGNKVEEIELPIFFSYPVRKDLIRRVFISEFTKALQPKGRDPMAGKRTSALSFGINLGLARVPRVK-----TTGEAALAPNTVGGRLAFPPTVEKKLVEEVNKKEKKLAIISALSATANMNFVKNRGH-VFSIDTLPIIVVDDITKLTKTKEIIEVLESLKVYEDVERVKDRIRIRSGKGK 190
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_HALMA (50S ribosomal protein L4P OS=Haloarcula marismortui GN=rpl4p PE=1 SV=4) HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13 Identity = 56/189 (29.63%), Postives = 89/189 (47.09%), Query Frame = 2 Query: 98 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKG 664 T+ L+G+ TD V LPDV + +R D++G N +Q Y AG +T AES+G+GR + +P+ G R Q GR P K + +N +++ LV RGH+ + E+P+VVSD E + KT + +L+ + +AD ++A D I+ G+G Sbjct: 4 TIYDLDGN--TDGE--VDLPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPK-QDGRARRVPQAV------KGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDR-DEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRA-DETKIKAGQG 179 The following BLAST results are available for this feature:
BLAST of FC875369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 68
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875369 ID=FC875369; Name=FC875369; organism=Citrus clementina; type=EST; length=700bpback to top |