FC875371

Overview
NameFC875371
Unique NameFC875371
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15209 contig Ccv1_Contig15209:102..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_PYRCJ (50S ribosomal protein L10e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.271e-31
Identity = 74/161 (45.96%), Postives = 95/161 (59.01%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527
            M  RPARCYR+IK  PY +  +  G P  +I  +D+G         F     LV+ E+  +  +ALEAAR   +KY+ K+ G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQV+  V  K  +  H +EALRRA  K P
Sbjct:    1 MPARPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARAAFTMVAKLVAEERGQIRMQALEAARQISSKYLTKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVIFYVEFKPEHLAHVKEALRRAASKLP 161          
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_PYRAR (50S ribosomal protein L10e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.243e-30
Identity = 71/158 (44.94%), Postives = 92/158 (58.23%), Query Frame = 3
Query:   57 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527
            RPARCYR+IK  PY +  +  G P  +I  +D+G         FP    L+  E+  +  +ALEAAR   +KY+ K+ G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQ+L     K  +  H +EA RRA  K P
Sbjct:    4 RPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARATFPMVAKLIVEERGQIRMQALEAARQMASKYLTKYVGDANYYLRLNVIPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQILFYAEFKPEHLAHIKEAFRRAASKLP 161          
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_THENV (50S ribosomal protein L10e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.623e-30
Identity = 71/158 (44.94%), Postives = 92/158 (58.23%), Query Frame = 3
Query:   57 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527
            RPARCY++IK  PY +  +  G P  +I  +D+G         FP    LV  E+  +  +ALEAAR    KY++K+ G   ++LR+   P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQV+     K  +  H +EALRRA  K P
Sbjct:    4 RPARCYKRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARAAFPLVAKLVVQERGQIRMQALEAARQMAYKYLSKYVGDANYYLRLEAVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEAGQVIFYAEFKPEHVAHMKEALRRASTKLP 161          
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_METJA (50S ribosomal protein L10e OS=Methanocaldococcus jannaschii GN=rpl10e PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.120e-30
Identity = 70/157 (44.59%), Postives = 94/157 (59.87%), Query Frame = 3
Query:   57 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527
            RP RCYR +   PY +  + +GVP PK+  + +G       EFP  V+LV+     +   ALEAAR+A NKY+ K  G+  +  ++RV+P  +LR +KM + AGADR+  GMR AFGKP GT ARV  GQ +L+V         A+EALRRA  K P
Sbjct:    5 RPNRCYRDVDKPPYTRKEYVKGVPQPKVVHFIMGNLSA---EFPVKVNLVATRPIQIRHNALEAARVAANKYLTKMCGRMGYKFQIRVYPHQILREHKMATGAGADRISDGMRLAFGKPIGTAARVKEGQAILTVWVNPDKFPAAKEALRRAAMKLP 158          
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_META3 (50S ribosomal protein L10e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.723e-30
Identity = 73/164 (44.51%), Postives = 97/164 (59.15%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQK 539
            M  RP++CYR+I    Y + ++ R VP PK+  Y  G   KG D FP  VHLV  +   +   ALE+ARI  NKY     G+  +  ++RV+P  VLR NKM S AGADR+  GMR +FGK  GT ARV  GQ ++++     N +HA+EALRR   K P + K
Sbjct:    1 MALRPSKCYREINKPAYTRKKYIRAVPQPKVVHYVNG--NKGGD-FPVEVHLVVKDDIQIRHNALESARIVGNKYTQNKCGRLGYKFQIRVYPHQVLRENKMASGAGADRISDGMRLSFGKAVGTAARVRKGQKIITISTTPENVIHAKEALRRCNMKMPVKCK 161          
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_PYRAE (50S ribosomal protein L10e OS=Pyrobaculum aerophilum GN=rpl10e PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.169e-30
Identity = 72/158 (45.57%), Postives = 92/158 (58.23%), Query Frame = 3
Query:   57 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGV-DEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527
            RPARCY++IK  PY +  +  G P  +I  +D+G         F     LV  E+  +  +ALEAAR   +KY+ K+ G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQVL     K  +  H +EALRRA  K P
Sbjct:    4 RPARCYKRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARTAFTMTAKLVVEERGQIRMQALEAARQMASKYLTKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVLFYAEFKPEHLPHIKEALRRAASKLP 161          
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_PYRIL (50S ribosomal protein L10e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.057e-30
Identity = 71/158 (44.94%), Postives = 93/158 (58.86%), Query Frame = 3
Query:   57 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527
            RPARCYR+IK  PY +  +  G P  +I  +D+G+        F     LV  E+  +  +ALEAAR    KY++K+ G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQV+     +  +  H +EALRRA  K P
Sbjct:    4 RPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMGVTSAAARAAFSMVAKLVVEERGQIRMQALEAARQMAYKYLSKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVIFYAEFRPEHIAHIKEALRRAASKLP 161          
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_ARCFU (50S ribosomal protein L10e OS=Archaeoglobus fulgidus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29
Identity = 68/160 (42.50%), Postives = 101/160 (63.12%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527
            M R+PAR +R+++ +PY ++ +  G P  ++R++D+G K     +FP  + LV+ E   +   ALEAAR+  NKY+++ AG   + L++R+ P H+LR +KM   AGADR+  GMR AFGKP G  ARV  G  ++SV  K  +   A+EALRRA  K P
Sbjct:    1 MARKPARMWRRLE-RPYTRTEYIDGAPGTRVRMFDMGNKSA---DFPVMLTLVAKEAVQIRENALEAARVVANKYVSRRAGASNYKLKLRIFPHHILREHKMAVGAGADRISQGMRAAFGKPVGRAARVKPGTKIMSVWVKPEHFEIAKEALRRAAMKMP 156          
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_THEAC (50S ribosomal protein L10e OS=Thermoplasma acidophilum GN=rpl10e PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.194e-27
Identity = 68/160 (42.50%), Postives = 97/160 (60.62%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527
            M  +PAR Y +I    Y +  F  GVP PKI  +  G +KK   +FP  + LV+ E   +   ALEAAR++ N+ M + AG D F+L+V  +P HVLR +KM + AGADR+ +GMR AFG+P GT ARV    V++  R  ++++   + ALR+A  K P
Sbjct:    1 MVTKPARMYSRITGPAYTRKEFMGGVPYPKITTFVQGNQKK---DFPIEMRLVAEEPCQIRHTALEAARVSVNRRMTEAAGLDYFYLKVVPYPHHVLREHKMATGAGADRISSGMRAAFGRPVGTAARVYPDDVIMIARTDEAHAKELKTALRKAAIKLP 157          
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_METMP (50S ribosomal protein L10e OS=Methanococcus maripaludis GN=rpl10e PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.194e-27
Identity = 67/160 (41.88%), Postives = 91/160 (56.88%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527
            M  RPARCYR I+ + Y +  + R VP PK+  Y +G       EFP  V LVS     +   ALE++RIA NKY+    G+  +   +RV+P  +LR NKM + AGADR+  GMR +FGK  GT A+V  GQ ++++         A+EALRR   K P
Sbjct:    1 MALRPARCYRTIERRSYTRKEYVRAVPQPKVVHYVMGNPSA---EFPVQVQLVSKSDILIRHNALESSRIAGNKYILSECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPEKFYAAKEALRRCSMKLP 157          
The following BLAST results are available for this feature:
BLAST of FC875371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_PYRCJ3.271e-3145.9650S ribosomal protein L10e OS=Pyrobaculum calidifo... [more]
RL10_PYRAR1.243e-3044.9450S ribosomal protein L10e OS=Pyrobaculum arsenati... [more]
RL10_THENV1.623e-3044.9450S ribosomal protein L10e OS=Thermoproteus neutro... [more]
RL10_METJA2.120e-3044.5950S ribosomal protein L10e OS=Methanocaldococcus j... [more]
RL10_META34.723e-3044.5150S ribosomal protein L10e OS=Methanococcus aeolic... [more]
RL10_PYRAE6.169e-3045.5750S ribosomal protein L10e OS=Pyrobaculum aerophil... [more]
RL10_PYRIL8.057e-3044.9450S ribosomal protein L10e OS=Pyrobaculum islandic... [more]
RL10_ARCFU1.795e-2942.5050S ribosomal protein L10e OS=Archaeoglobus fulgid... [more]
RL10_THEAC2.194e-2742.5050S ribosomal protein L10e OS=Thermoplasma acidoph... [more]
RL10_METMP2.194e-2741.8850S ribosomal protein L10e OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionC31403B12EF CTVClemen1 Citrus clementina cDNA clone C31403B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875371 ID=FC875371; Name=FC875371; organism=Citrus clementina; type=EST; length=698bp
TCTTGGGTTTCTGTCTTAGTTGCTGAATACCTACCAGGGCTTTCGCCATG
GGAAGAAGACCTGCTAGGTGTTATCGCCAGATAAAAAATAAGCCGTATCC
GAAATCACGCTTTTGTCGTGGTGTGCCTGATCCCAAGATCAGGATCTATG
ATGTTGGAATGAAGAAGAAAGGGGTTGATGAATTCCCTTTCTGTGTGCAC
TTGGTGTCTTGGGAAAAGGAGAACGTATCTAGTGAAGCTCTTGAGGCTGC
TCGAATTGCTTGCAACAAATATATGGCCAAGTTTGCCGGGAAAGATGCTT
TCCATTTGCGAGTCCGTGTTCACCCATTCCATGTCTTGCGTATCAACAAA
ATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGGTATGAGGGGTGC
TTTCGGTAAACCACAGGGCACTTGTGCTAGAGTTGCCATTGGACAGGTCC
TCCTGTCAGTTCGCTGCAAGGATAGCAATAGTCTTCATGCTCAAGAGGCT
CTTCGTCGTGCAAAGTTCAAGTTTCCTGGTCGCCAAAAAAATCATTGTCA
GCAGAAAGTGGGGTTTCACCAAGTTTAGCCGCAGTGATTATTTGAGGTTC
AAGTCAGAGAACCGTATTGTGCCCGATGGTGTTAATGCAAAGCTTCTTGG
ATGTCATGGACCCTTGGCGAGTCGCCAACAGGAAGAGCTTTCTTACAT
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