FC875371
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_THEPD (50S ribosomal protein L10e OS=Thermofilum pendens (strain Hrk 5) GN=rpl10e PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.865e-27 Identity = 70/160 (43.75%), Postives = 89/160 (55.62%), Query Frame = 3 Query: 48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527 M RP RCYR PY + + + P I +D+G K F + LV + + ALEAAR NKY+ G+ F LRV V P H+LR NKM++ AGADRLQ GMR +FG P G ARV GQ+++ V+ N HA+EALRRA K P Sbjct: 1 MPLRPGRCYRHFGTPPYTRLEYIKSNPPVLIPKFDLGNPK---GNFNTVLKLVVMRPGQIRANALEAARQHANKYLTAKVGEANFFLRVAVFPHHILRENKMMAMAGADRLQDGMRLSFGTPVGRAARVEAGQIVMLVKVDAKNIDHAKEALRRAASKIP 157
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_METM7 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl10e PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 8.337e-27 Identity = 65/160 (40.62%), Postives = 91/160 (56.88%), Query Frame = 3 Query: 48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527 M RPARCYR + + Y + + R VP PK+ Y +G EFP V L+S + ALE++RIA NKY+ + G+ + +RV+P +LR NKM + AGADR+ GMR +FGK GT A+V GQ ++++ A+EALRR K P Sbjct: 1 MALRPARCYRTTERRSYTRKEYVRAVPQPKVVHYVMGNSSV---EFPVEVQLISKSDILIRHNALESSRIAGNKYILRECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPEKFYAAKEALRRCSMKLP 157
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_METM6 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl10e PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 8.337e-27 Identity = 65/160 (40.62%), Postives = 91/160 (56.88%), Query Frame = 3 Query: 48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527 M RPARCYR + + Y + + R VP PK+ Y +G EFP V L+S + ALE++RIA NKY+ + G+ + +RV+P +LR NKM + AGADR+ GMR +FGK GT A+V GQ ++++ A+EALRR K P Sbjct: 1 MALRPARCYRTTERRSYTRKEYVRAVPQPKVVHYVMGNSSV---EFPVEVQLISKSDILIRHNALESSRIAGNKYILRECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPEKFYAAKEALRRCSMKLP 157
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_CALMQ (50S ribosomal protein L10e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl10e PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 8.337e-27 Identity = 69/161 (42.86%), Postives = 96/161 (59.63%), Query Frame = 3 Query: 48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKK-KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527 M RPARCY++IK +PY + ++ G P +I +++G K K + F L E + ALEAAR KY++K F+L++ +P HV+R NKML+ AGADRLQ GMR AFG P G ++ G+VL+ V +D N HA+EAL RA+ K P Sbjct: 1 MPLRPARCYKRIK-RPYTRLKYIHGAPYVQIPRFEMGATKAKDRERFTSVAVLRVLEGGQIRVNALEAARQMAYKYLSKVLTDQNFYLKIIKYPHHVIRENKMLAMAGADRLQEGMRLAFGVPTGRAIQIEPGEVLMIVEVEDRNITHAKEALNRARAKLP 160
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_THEVO (50S ribosomal protein L10e OS=Thermoplasma volcanium GN=rpl10e PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.857e-26 Identity = 66/160 (41.25%), Postives = 97/160 (60.62%), Query Frame = 3 Query: 48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527 M +PAR Y +I Y + F GVP PKI + G +K+ +FP + L++ E V ALEAAR++ N+ M + AG D F+L+V +P HVLR +KM + AGADR+ +GMR AFG+P GT ARV V++ R ++++ + AL++A K P Sbjct: 1 MVTKPARMYTRITGPAYTRKEFMGGVPYPKITTFVQGNQKR---DFPIEMQLIAMESCQVRHTALEAARVSVNRRMTEAAGLDNFYLKVVPYPHHVLREHKMATGAGADRISSGMRAAFGRPVGTAARVYQNDVIMIGRTDEAHAHELKIALKKAAIKLP 157
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_METM5 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl10e PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.857e-26 Identity = 66/160 (41.25%), Postives = 90/160 (56.25%), Query Frame = 3 Query: 48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527 M RPARCYR + + Y + + R VP PK+ Y +G EFP V LVS + ALE++RIA NKY+ G+ + +RV+P +LR NKM + AGADR+ GMR +FGK GT A+V GQ ++++ A+EALRR K P Sbjct: 1 MALRPARCYRTTERRSYTRKEYVRAVPQPKVVHYVMGNSSV---EFPVEVQLVSKSDILIRHNALESSRIAGNKYIMGECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPERFYAAKEALRRCSMKLP 157
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_METBU (50S ribosomal protein L10e OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl10e PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.138e-26 Identity = 62/160 (38.75%), Postives = 98/160 (61.25%), Query Frame = 3 Query: 48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527 M R+PA YR +K++ + + ++ GVP ++ +D+G K +FP + L++ E+ + ALEAARI N+ M AG+ FH+++RV+P VLR NK + AGADR+ +GMR A+GK T ARV+ Q + ++ + + A++ALRRA K P Sbjct: 1 MVRKPASMYRNVKSRSFTRRKYMGGVPGSQVIHFDMGNKTA---DFPVKITLLADERCQIRHTALEAARITANRAMTTAAGRSGFHMKLRVYPHEVLRENKQATGAGADRVSSGMRAAYGKNVSTAARVSARQKIFTISVNKEHFIIAKDALRRAGQKLP 157
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_UNCMA (50S ribosomal protein L10e OS=Uncultured methanogenic archaeon RC-I GN=rpl10e PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.404e-26 Identity = 66/160 (41.25%), Postives = 91/160 (56.88%), Query Frame = 3 Query: 48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527 M R+P R Y++ Y + + GVP K+ +D+G +E P V LV E + +ALEAARI+ N+Y+ GK + +VRV+P VLR NK + AGADR+ GMR AFGK GT ARV GQ + ++ +N A+EA+RRA K P Sbjct: 1 MARKPGRMYKKFSGPAYTRREYMGGVPGVKVAQFDMGNL---TEELPIAVTLVVNETCQIRHDALEAARISANRYLLNDVGKTNYRFKVRVYPHQVLRENKQATGAGADRVSDGMRRAFGKAVGTAARVYEGQGVFTIWVNRANFEKAKEAMRRAGHKLP 157
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_SULAC (50S ribosomal protein L10e OS=Sulfolobus acidocaldarius GN=rpl10e PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.054e-25 Identity = 68/166 (40.96%), Postives = 99/166 (59.64%), Query Frame = 3 Query: 48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAK-FAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQK 539 M RP RCYR+ Y + + G+P PKI + +G ++ + + L++ EK + ALEAAR+ KY++K A + F L V +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+ +G++++ VR K + A+EAL+ A K P R K Sbjct: 1 MPLRPGRCYRKFSGPAYTRREYIPGIPMPKITKFVMGNVN---GDYDYELRLITTEKGQIRHNALEAARVIALKYLSKKLASEQNFALVVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARLEKLGELVMYVRVKKEHLEAAKEALKIASSKLPIRTK 163
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_METS5 (50S ribosomal protein L10e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl10e PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.054e-25 Identity = 66/162 (40.74%), Postives = 93/162 (57.41%), Query Frame = 3 Query: 48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVA-IGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527 M RP RCYR Y + + GVP PKI + +G KK D F V L++ + + ALEAAR+ K M G + F+L V +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+ +G +++++R K + A++A + A K P Sbjct: 1 MPLRPGRCYRHFSGPAYTRKEYIPGVPQPKITKFTMGDHKKDYD---FEVRLLTKQIGQIRHNALEAARVIALKQMTSMVGNETDFYLYVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARITKLGDLIMAIRVKKEHLEFAKKAFKVASSKLP 159 The following BLAST results are available for this feature:
BLAST of FC875371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 92
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875371 ID=FC875371; Name=FC875371; organism=Citrus clementina; type=EST; length=698bpback to top |