FC875371

Overview
NameFC875371
Unique NameFC875371
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15209 contig Ccv1_Contig15209:102..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_THEPD (50S ribosomal protein L10e OS=Thermofilum pendens (strain Hrk 5) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.865e-27
Identity = 70/160 (43.75%), Postives = 89/160 (55.62%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527
            M  RP RCYR     PY +  + +  P   I  +D+G  K     F   + LV      + + ALEAAR   NKY+    G+  F LRV V P H+LR NKM++ AGADRLQ GMR +FG P G  ARV  GQ+++ V+    N  HA+EALRRA  K P
Sbjct:    1 MPLRPGRCYRHFGTPPYTRLEYIKSNPPVLIPKFDLGNPK---GNFNTVLKLVVMRPGQIRANALEAARQHANKYLTAKVGEANFFLRVAVFPHHILRENKMMAMAGADRLQDGMRLSFGTPVGRAARVEAGQIVMLVKVDAKNIDHAKEALRRAASKIP 157          
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_METM7 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.337e-27
Identity = 65/160 (40.62%), Postives = 91/160 (56.88%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527
            M  RPARCYR  + + Y +  + R VP PK+  Y +G       EFP  V L+S     +   ALE++RIA NKY+ +  G+  +   +RV+P  +LR NKM + AGADR+  GMR +FGK  GT A+V  GQ ++++         A+EALRR   K P
Sbjct:    1 MALRPARCYRTTERRSYTRKEYVRAVPQPKVVHYVMGNSSV---EFPVEVQLISKSDILIRHNALESSRIAGNKYILRECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPEKFYAAKEALRRCSMKLP 157          
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_METM6 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.337e-27
Identity = 65/160 (40.62%), Postives = 91/160 (56.88%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527
            M  RPARCYR  + + Y +  + R VP PK+  Y +G       EFP  V L+S     +   ALE++RIA NKY+ +  G+  +   +RV+P  +LR NKM + AGADR+  GMR +FGK  GT A+V  GQ ++++         A+EALRR   K P
Sbjct:    1 MALRPARCYRTTERRSYTRKEYVRAVPQPKVVHYVMGNSSV---EFPVEVQLISKSDILIRHNALESSRIAGNKYILRECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPEKFYAAKEALRRCSMKLP 157          
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_CALMQ (50S ribosomal protein L10e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.337e-27
Identity = 69/161 (42.86%), Postives = 96/161 (59.63%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKK-KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527
            M  RPARCY++IK +PY + ++  G P  +I  +++G  K K  + F     L   E   +   ALEAAR    KY++K      F+L++  +P HV+R NKML+ AGADRLQ GMR AFG P G   ++  G+VL+ V  +D N  HA+EAL RA+ K P
Sbjct:    1 MPLRPARCYKRIK-RPYTRLKYIHGAPYVQIPRFEMGATKAKDRERFTSVAVLRVLEGGQIRVNALEAARQMAYKYLSKVLTDQNFYLKIIKYPHHVIRENKMLAMAGADRLQEGMRLAFGVPTGRAIQIEPGEVLMIVEVEDRNITHAKEALNRARAKLP 160          
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_THEVO (50S ribosomal protein L10e OS=Thermoplasma volcanium GN=rpl10e PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.857e-26
Identity = 66/160 (41.25%), Postives = 97/160 (60.62%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527
            M  +PAR Y +I    Y +  F  GVP PKI  +  G +K+   +FP  + L++ E   V   ALEAAR++ N+ M + AG D F+L+V  +P HVLR +KM + AGADR+ +GMR AFG+P GT ARV    V++  R  ++++   + AL++A  K P
Sbjct:    1 MVTKPARMYTRITGPAYTRKEFMGGVPYPKITTFVQGNQKR---DFPIEMQLIAMESCQVRHTALEAARVSVNRRMTEAAGLDNFYLKVVPYPHHVLREHKMATGAGADRISSGMRAAFGRPVGTAARVYQNDVIMIGRTDEAHAHELKIALKKAAIKLP 157          
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_METM5 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.857e-26
Identity = 66/160 (41.25%), Postives = 90/160 (56.25%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527
            M  RPARCYR  + + Y +  + R VP PK+  Y +G       EFP  V LVS     +   ALE++RIA NKY+    G+  +   +RV+P  +LR NKM + AGADR+  GMR +FGK  GT A+V  GQ ++++         A+EALRR   K P
Sbjct:    1 MALRPARCYRTTERRSYTRKEYVRAVPQPKVVHYVMGNSSV---EFPVEVQLVSKSDILIRHNALESSRIAGNKYIMGECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPERFYAAKEALRRCSMKLP 157          
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_METBU (50S ribosomal protein L10e OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.138e-26
Identity = 62/160 (38.75%), Postives = 98/160 (61.25%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527
            M R+PA  YR +K++ + + ++  GVP  ++  +D+G K     +FP  + L++ E+  +   ALEAARI  N+ M   AG+  FH+++RV+P  VLR NK  + AGADR+ +GMR A+GK   T ARV+  Q + ++     + + A++ALRRA  K P
Sbjct:    1 MVRKPASMYRNVKSRSFTRRKYMGGVPGSQVIHFDMGNKTA---DFPVKITLLADERCQIRHTALEAARITANRAMTTAAGRSGFHMKLRVYPHEVLRENKQATGAGADRVSSGMRAAYGKNVSTAARVSARQKIFTISVNKEHFIIAKDALRRAGQKLP 157          
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_UNCMA (50S ribosomal protein L10e OS=Uncultured methanogenic archaeon RC-I GN=rpl10e PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.404e-26
Identity = 66/160 (41.25%), Postives = 91/160 (56.88%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527
            M R+P R Y++     Y +  +  GVP  K+  +D+G      +E P  V LV  E   +  +ALEAARI+ N+Y+    GK  +  +VRV+P  VLR NK  + AGADR+  GMR AFGK  GT ARV  GQ + ++    +N   A+EA+RRA  K P
Sbjct:    1 MARKPGRMYKKFSGPAYTRREYMGGVPGVKVAQFDMGNL---TEELPIAVTLVVNETCQIRHDALEAARISANRYLLNDVGKTNYRFKVRVYPHQVLRENKQATGAGADRVSDGMRRAFGKAVGTAARVYEGQGVFTIWVNRANFEKAKEAMRRAGHKLP 157          
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_SULAC (50S ribosomal protein L10e OS=Sulfolobus acidocaldarius GN=rpl10e PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.054e-25
Identity = 68/166 (40.96%), Postives = 99/166 (59.64%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAK-FAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQK 539
            M  RP RCYR+     Y +  +  G+P PKI  + +G       ++ + + L++ EK  +   ALEAAR+   KY++K  A +  F L V  +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+  +G++++ VR K  +   A+EAL+ A  K P R K
Sbjct:    1 MPLRPGRCYRKFSGPAYTRREYIPGIPMPKITKFVMGNVN---GDYDYELRLITTEKGQIRHNALEAARVIALKYLSKKLASEQNFALVVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARLEKLGELVMYVRVKKEHLEAAKEALKIASSKLPIRTK 163          
BLAST of FC875371 vs. ExPASy Swiss-Prot
Match: RL10_METS5 (50S ribosomal protein L10e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.054e-25
Identity = 66/162 (40.74%), Postives = 93/162 (57.41%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVA-IGQVLLSVRCKDSNSLHAQEALRRAKFKFP 527
            M  RP RCYR      Y +  +  GVP PKI  + +G  KK  D   F V L++ +   +   ALEAAR+   K M    G +  F+L V  +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+  +G +++++R K  +   A++A + A  K P
Sbjct:    1 MPLRPGRCYRHFSGPAYTRKEYIPGVPQPKITKFTMGDHKKDYD---FEVRLLTKQIGQIRHNALEAARVIALKQMTSMVGNETDFYLYVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARITKLGDLIMAIRVKKEHLEFAKKAFKVASSKLP 159          
The following BLAST results are available for this feature:
BLAST of FC875371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_THEPD2.865e-2743.7550S ribosomal protein L10e OS=Thermofilum pendens ... [more]
RL10_METM78.337e-2740.6350S ribosomal protein L10e OS=Methanococcus maripa... [more]
RL10_METM68.337e-2740.6350S ribosomal protein L10e OS=Methanococcus maripa... [more]
RL10_CALMQ8.337e-2742.8650S ribosomal protein L10e OS=Caldivirga maquiling... [more]
RL10_THEVO1.857e-2641.2550S ribosomal protein L10e OS=Thermoplasma volcani... [more]
RL10_METM51.857e-2641.2550S ribosomal protein L10e OS=Methanococcus maripa... [more]
RL10_METBU4.138e-2638.7550S ribosomal protein L10e OS=Methanococcoides bur... [more]
RL10_UNCMA5.404e-2641.2550S ribosomal protein L10e OS=Uncultured methanoge... [more]
RL10_SULAC2.054e-2540.9650S ribosomal protein L10e OS=Sulfolobus acidocald... [more]
RL10_METS52.054e-2540.7450S ribosomal protein L10e OS=Metallosphaera sedul... [more]

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Properties
Property NameValue
Genbank descriptionC31403B12EF CTVClemen1 Citrus clementina cDNA clone C31403B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875371 ID=FC875371; Name=FC875371; organism=Citrus clementina; type=EST; length=698bp
TCTTGGGTTTCTGTCTTAGTTGCTGAATACCTACCAGGGCTTTCGCCATG
GGAAGAAGACCTGCTAGGTGTTATCGCCAGATAAAAAATAAGCCGTATCC
GAAATCACGCTTTTGTCGTGGTGTGCCTGATCCCAAGATCAGGATCTATG
ATGTTGGAATGAAGAAGAAAGGGGTTGATGAATTCCCTTTCTGTGTGCAC
TTGGTGTCTTGGGAAAAGGAGAACGTATCTAGTGAAGCTCTTGAGGCTGC
TCGAATTGCTTGCAACAAATATATGGCCAAGTTTGCCGGGAAAGATGCTT
TCCATTTGCGAGTCCGTGTTCACCCATTCCATGTCTTGCGTATCAACAAA
ATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGGTATGAGGGGTGC
TTTCGGTAAACCACAGGGCACTTGTGCTAGAGTTGCCATTGGACAGGTCC
TCCTGTCAGTTCGCTGCAAGGATAGCAATAGTCTTCATGCTCAAGAGGCT
CTTCGTCGTGCAAAGTTCAAGTTTCCTGGTCGCCAAAAAAATCATTGTCA
GCAGAAAGTGGGGTTTCACCAAGTTTAGCCGCAGTGATTATTTGAGGTTC
AAGTCAGAGAACCGTATTGTGCCCGATGGTGTTAATGCAAAGCTTCTTGG
ATGTCATGGACCCTTGGCGAGTCGCCAACAGGAAGAGCTTTCTTACAT
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