FC875373

Overview
NameFC875373
Unique NameFC875373
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875373 vs. ExPASy Swiss-Prot
Match: IMA2_SCHPO (Importin subunit alpha-2 OS=Schizosaccharomyces pombe GN=imp1 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.020e-30
Identity = 73/150 (48.67%), Postives = 97/150 (64.67%), Query Frame = 3
Query:    3 PLVNLLQNAEFDIKKEAAWAISNATSGGTHE--QIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEED----------DETIAAGDGPQ 416
            PLV+LL  A++  KKEA WAISNATSGG  +  QI+YLV +G IKPLCD+    D +I+ V L+ +ENILKVGE ++ M     ++NQYA  VEEA G++ I +LQS  NN+IY KA  I+E Y+ +ED          +     G+GPQ
Sbjct:  378 PLVHLLSYADYKTKKEACWAISNATSGGLGQPDQIRYLVSQGVIKPLCDMLNGSDNKIIQVALDAIENILKVGEMDRTMD--LENINQYAVYVEEAGGMDMIHDLQSSGNNDIYLKAYSIIEKYFSDEDAVEDLAPETENGAFTFGNGPQ 525          
BLAST of FC875373 vs. ExPASy Swiss-Prot
Match: IMA1_SCHPO (Importin subunit alpha-1 OS=Schizosaccharomyces pombe GN=cut15 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.118e-29
Identity = 65/130 (50.00%), Postives = 91/130 (70.00%), Query Frame = 3
Query:    3 PLVNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDD 386
            PL++LL  A+F I+KEA WAISNATSGG    +QI+YLV +G IKPLC+L  C D +I+ V L+G+ENIL+VGE ++        +N YA  VE+A G++ I   Q+  N+EIY+KA  I+E ++ EED+
Sbjct:  378 PLIHLLTTADFKIQKEACWAISNATSGGARRPDQIRYLVEQGAIKPLCNLLACQDNKIIQVALDGIENILRVGELDR--ANNPDKINLYAVYVEDAGGMDLIHECQNSSNSEIYQKAYNIIEKFFGEEDE 505          
BLAST of FC875373 vs. ExPASy Swiss-Prot
Match: IMA4_MOUSE (Importin subunit alpha-4 OS=Mus musculus GN=Kpna4 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.950e-22
Identity = 51/126 (40.48%), Postives = 78/126 (61.90%), Query Frame = 3
Query:    6 LVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEED 383
            +++LL   +F  +KEAAWAISN T  G  +Q+ YL+++  I P C+L    D ++V V L+GL NILK+ E +             A L+EE  GLEKIE LQ+H+N +IY+ A +I++ ++  +D
Sbjct:  373 IIHLLDKGDFGTQKEAAWAISNLTISGRKDQVAYLIQQNVIPPFCNLLTVKDAQVVQVVLDGLSNILKMAEDQ---------AETIANLIEECGGLEKIEQLQNHENEDIYKLAYEIIDQFFSSDD 489          
BLAST of FC875373 vs. ExPASy Swiss-Prot
Match: IMA4_HUMAN (Importin subunit alpha-4 OS=Homo sapiens GN=KPNA4 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.852e-22
Identity = 51/126 (40.48%), Postives = 77/126 (61.11%), Query Frame = 3
Query:    6 LVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEED 383
            +++LL   +F  +KEAAWAISN T  G  +Q+ YL+++  I P C+L    D ++V V L+GL NILK+ E E               L+EE  GLEKIE LQ+H+N +IY+ A +I++ ++  +D
Sbjct:  373 IIHLLDKGDFGTQKEAAWAISNLTISGRKDQVAYLIQQNVIPPFCNLLTVKDAQVVQVVLDGLSNILKMAEDE---------AETIGNLIEECGGLEKIEQLQNHENEDIYKLAYEIIDQFFSSDD 489          
BLAST of FC875373 vs. ExPASy Swiss-Prot
Match: IMA3_CAEEL (Importin subunit alpha-3 OS=Caenorhabditis elegans GN=ima-3 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.121e-21
Identity = 53/130 (40.77%), Postives = 81/130 (62.31%), Query Frame = 3
Query:    6 LVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV-GEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDET 392
            +++LL   +F  +KEAAWAISN T  G   Q++ +V+ G ++P C +  C D +I+ V L+G+ NILK+ GEA            Q    +EE  GL+KIENLQ+H+N +IY+ A +I++ ++   DDET
Sbjct:  366 IIHLLDRGDFPTQKEAAWAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVVLDGINNILKMAGEA----------AEQVTSEIEECGGLDKIENLQNHENEDIYKLAFEIIDNFF-SSDDET 484          
BLAST of FC875373 vs. ExPASy Swiss-Prot
Match: IMA2_MOUSE (Importin subunit alpha-2 OS=Mus musculus GN=Kpna2 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.912e-21
Identity = 58/147 (39.46%), Postives = 87/147 (59.18%), Query Frame = 3
Query:    6 LVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW-LEEDDETIAAGDGPQPGFPY 431
            LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +I+ V L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +Y+ ++ ++E Y+ +EE+++     +    GF +
Sbjct:  382 LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSEGFAF 517          
BLAST of FC875373 vs. ExPASy Swiss-Prot
Match: IMA2_HUMAN (Importin subunit alpha-2 OS=Homo sapiens GN=KPNA2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.497e-21
Identity = 54/132 (40.91%), Postives = 82/132 (62.12%), Query Frame = 3
Query:    6 LVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDE 389
            LV++L  A+F  +KEA WA++N TSGGT EQI YLV  G I+PL +L    D +I+ V L+ + NI     K+GE EK            + ++EE  GL+KIE LQ+H+N  +Y+ ++ ++E Y+  E++E
Sbjct:  382 LVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQNHENESVYKASLSLIEKYFSVEEEE 502          
BLAST of FC875373 vs. ExPASy Swiss-Prot
Match: IMA1_XENLA (Importin subunit alpha-1 OS=Xenopus laevis GN=kpna1 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.259e-21
Identity = 57/136 (41.91%), Postives = 81/136 (59.56%), Query Frame = 3
Query:    3 PLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDETIA 398
            PLV+LL   +F  +KEA WA++N TSGGT EQ+  LV+ G ++PL +L    D + + V L+ + NI     K+GE EK              LVEE  GLEKIE LQ+HDN+ +Y  A+ ++E Y+  E+ + IA
Sbjct:  374 PLVDLLNKGDFKAQKEAVWAVTNYTSGGTVEQVVQLVQCGVLEPLLNLLTIKDSKTILVILDAISNIFLAAEKLGEQEK-----------LCLLVEELGGLEKIEALQTHDNHMVYHAALALIEKYFSGEEADDIA 498          
BLAST of FC875373 vs. ExPASy Swiss-Prot
Match: IMA2_XENLA (Importin subunit alpha-2 OS=Xenopus laevis GN=kpna2 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.489e-21
Identity = 62/158 (39.24%), Postives = 89/158 (56.33%), Query Frame = 3
Query:    3 PLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEV---QVP 455
            PLV+LL+  +F  +KEA WA++N TSGGT EQ+  LV+ G ++PL +L    D + + V L+ + NI     K+GE EK              LVEE  GLEKIE LQ+HDN  +Y  A+ ++E Y+  E+ + + A +      P  GN+    QVP
Sbjct:  374 PLVDLLKKGDFKAQKEAVWAVTNYTSGGTVEQVVQLVQCGVLEPLLNLLTIKDSKTILVILDAISNIFLAAEKLGEQEK-----------LCLLVEELGGLEKIEALQTHDNRMVYHAALALIEKYFSGEEADEMNALE------PEVGNDAYTFQVP 514          
BLAST of FC875373 vs. ExPASy Swiss-Prot
Match: IMA3_MOUSE (Importin subunit alpha-3 OS=Mus musculus GN=Kpna3 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.761e-20
Identity = 50/126 (39.68%), Postives = 79/126 (62.70%), Query Frame = 3
Query:    6 LVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEED 383
            +++ L   +F  +KEAAWAISN T  G  +Q++YLV++  I P C+L    D ++V V L+GL+NIL +         A  + +  A+++EE  GLEKIE LQ H+N +IY+ A +I++ Y+  +D
Sbjct:  373 IIHQLAKGDFGTQKEAAWAISNLTISGRKDQVEYLVQQNVIPPFCNLLSVKDSQVVQVVLDGLKNILIM---------AGDEASTIAEIIEECGGLEKIEVLQQHENEDIYKLAFEIIDQYFSGDD 489          
The following BLAST results are available for this feature:
BLAST of FC875373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
IMA2_SCHPO5.020e-3048.67Importin subunit alpha-2 OS=Schizosaccharomyces po... [more]
IMA1_SCHPO1.118e-2950.00Importin subunit alpha-1 OS=Schizosaccharomyces po... [more]
IMA4_MOUSE2.950e-2240.48Importin subunit alpha-4 OS=Mus musculus GN=Kpna4 ... [more]
IMA4_HUMAN3.852e-2240.48Importin subunit alpha-4 OS=Homo sapiens GN=KPNA4 ... [more]
IMA3_CAEEL1.121e-2140.77Importin subunit alpha-3 OS=Caenorhabditis elegans... [more]
IMA2_MOUSE1.912e-2139.46Importin subunit alpha-2 OS=Mus musculus GN=Kpna2 ... [more]
IMA2_HUMAN2.497e-2140.91Importin subunit alpha-2 OS=Homo sapiens GN=KPNA2 ... [more]
IMA1_XENLA4.259e-2141.91Importin subunit alpha-1 OS=Xenopus laevis GN=kpna... [more]
IMA2_XENLA9.489e-2139.24Importin subunit alpha-2 OS=Xenopus laevis GN=kpna... [more]
IMA3_MOUSE2.761e-2039.68Importin subunit alpha-3 OS=Mus musculus GN=Kpna3 ... [more]

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Properties
Property NameValue
Genbank descriptionC31403C02EF CTVClemen1 Citrus clementina cDNA clone C31403C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875373 ID=FC875373; Name=FC875373; organism=Citrus clementina; type=EST; length=726bp
GTCCCCTTGTCAATCTGCTTCAAAATGCTGAATTTGATATAAAGAAGGAG
GCTGCTTGGGCAATTTCAAATGCCACCTCGGGTGGTACTCATGAGCAAAT
CAAGTACCTGGTGAGAGAAGGGTGTATAAAACCTTTGTGTGATCTCTTTG
TATGCCCTGATCCACGGATTGTCACTGTTTGCTTAGAAGGATTAGAGAAC
ATTTTGAAGGTCGGGGAAGCTGAAAAGAATATGGGTACTGCCACTGCAGA
TGTTAATCAATATGCCCAGTTGGTTGAGGAGGCTGAGGGGTTAGAAAAGA
TTGAAAATCTACAAAGTCATGACAACAATGAGATCTATGAGAAGGCAGTA
AAAATTCTTGAGACATACTGGTTGGAAGAGGACGATGAGACAATAGCTGC
AGGTGATGGTCCTCAGCCAGGTTTCCCATATGCAGGGAATGAGGTTCAAG
TTCCGTCTGGTGGATTCAATTTCAGTTGAAAATCAATTGGCTCATTTTCT
GGTGGGAGGGATACATAGTTTGTCGGATGGAGCAGAAGATTGTGTTGGGG
TGGGTTTGAATGTTGACGACGTATGTCGGCGTCAAGTTGGGTCGGGTCAG
GGCGCCTTTGCATGTCTGGTTACAGGTTTGGTCCAGTGTCTATTGTGGTT
GAAAGGTGCCAACTAAGGTCGGTCTATACTTACAGTGTCCAATAAGTGAG
GCTGGATGGATTACTACATATGATGG
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