FC875375

Overview
NameFC875375
Unique NameFC875375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBPL_DICDI (Nucleotide-binding protein-like OS=Dictyostelium discoideum GN=nubpl PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.134e-29
Identity = 65/135 (48.15%), Postives = 85/135 (62.96%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            ++ I NI+AVSS KGGVGKST AVN+A  L+     VG+ D DV+GPS+P M+  +N       E   +IP +  G+K +S GF  +     I RGPMV   + +LL  T+WG LD LV D+PPGTGD  LT+CQ
Sbjct:   53 IEGIKNIIAVSSAKGGVGKSTCAVNIALGLSSHNLSVGLLDVDVFGPSIPLMMDLKNHEKPFTNELNQMIPLQNYGIKCMSMGFLVNEDDPIIWRGPMVGSALEKLLRQTDWGHLDVLVCDLPPGTGDAILTMCQ 187          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: MRP_MYCTU (Protein mrp homolog OS=Mycobacterium tuberculosis GN=mrp PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.134e-29
Identity = 80/250 (32.00%), Postives = 123/250 (49.20%), Query Frame = 2
Query:    5 TGTAEND----VLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQP---------------ARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR--AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            +GT + D    +  AL ++IDP+    I   G VK +      G V   + LT   CP K    +R    V  +P  + V V++                     P+     P+ L ++    AV+S KGGVGKSTV VNLA  +A  G  +G+ DAD++G S+P M+   +R  ++   +  I+P     VK++S     QG    + RGPM+   + Q L    WG+LD L++D+PPGTGD+ +++ Q
Sbjct:    2 SGTRDGDLNAAIRTALGKVIDPELRRPITELGMVKSIDTGPD-GSVHVEIYLTIAGCPKKSEITERVTRAVADVPGTSAVRVSLDVMSDEQRTELRKQLRGDTREPVIPFAQPDSLTRV---YAVASGKGGVGKSTVTVNLAAAMAVRGLSIGVLDADIHGHSIPRMMGTTDRPTQV---ESMILPPIAHQVKVISIAQFTQGNTPVVWRGPMLHRALQQFLADVYWGDLDVLLLDLPPGTGDVAISVAQ 244          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: MRP_MYCBO (Protein mrp homolog OS=Mycobacterium bovis GN=mrp PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.134e-29
Identity = 80/250 (32.00%), Postives = 123/250 (49.20%), Query Frame = 2
Query:    5 TGTAEND----VLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQP---------------ARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR--AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            +GT + D    +  AL ++IDP+    I   G VK +      G V   + LT   CP K    +R    V  +P  + V V++                     P+     P+ L ++    AV+S KGGVGKSTV VNLA  +A  G  +G+ DAD++G S+P M+   +R  ++   +  I+P     VK++S     QG    + RGPM+   + Q L    WG+LD L++D+PPGTGD+ +++ Q
Sbjct:    2 SGTRDGDLNAAIRTALGKVIDPELRRPITELGMVKSIDTGPD-GSVHVEIYLTIAGCPKKSEITERVTRAVADVPGTSAVRVSLDVMSDEQRTELRKQLRGDTREPVIPFAQPDSLTRV---YAVASGKGGVGKSTVTVNLAAAMAVRGLSIGVLDADIHGHSIPRMMGTTDRPTQV---ESMILPPIAHQVKVISIAQFTQGNTPVVWRGPMLHRALQQFLADVYWGDLDVLLLDLPPGTGDVAISVAQ 244          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: Y283_METJA (Uncharacterized ATP-binding protein MJ0283 OS=Methanocaldococcus jannaschii GN=MJ0283 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.806e-27
Identity = 67/141 (47.52%), Postives = 88/141 (62.41%), Query Frame = 2
Query:  278 QLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF---SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            ++ E + KI + + + S KGGVGKSTV VNLA  L  MG +VG+ DAD++GP++P M+  EN      P     I T+  G+K +S G+     +   I RGP VSG I Q L+   WGELDYL+ID PPGTGD QLT+ Q
Sbjct:   30 KIRENMSKIKHKIVILSGKGGVGKSTVTVNLAAALNLMGKKVGVLDADIHGPNIPKMLGVENTQPMAGPAGIFPIVTKD-GIKTMSIGYLLPDDKTPVIWRGPKVSGAIRQFLSDVVWGELDYLLIDTPPGTGDEQLTIMQ 169          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: IND1_YARLI (Iron-sulfur protein IND1 OS=Yarrowia lipolytica GN=IND1 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.197e-27
Identity = 70/172 (40.70%), Postives = 100/172 (58.14%), Query Frame = 2
Query:  188 RANEVVLAIPWVNKVNVTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM--VSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            R++E  L IP       + ++ P  P    + PE +  +   + VSS KGGVGKSTV+VN A +LA  G RVG+ D D++GPS+PTM  +S E R+      +  +IP    G++++S GF          RG +V   + QLL   +WG LD LV+D+PPGTGD+QLT+ Q
Sbjct:   34 RSHENPLGIP------KSPASAPRIPRKTTRRPEPIAGVKKTIVVSSAKGGVGKSTVSVNTALSLAKRGLRVGLLDVDIFGPSIPTMFGLSGEPRM----THEGKLIPMSKFGIQVMSMGFLVDPNKAVAWRGLLVQKALEQLLQDVDWGTLDVLVMDLPPGTGDVQLTIAQ 195          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: SALA_BACSU (Protein mrp homolog salA OS=Bacillus subtilis GN=salA PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.398e-26
Identity = 76/232 (32.76%), Postives = 123/232 (53.02%), Query Frame = 2
Query:   17 ENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPARPIFAEQLPEGLQK----ISN---IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNP--EKRTIIPTEYLGVKLVSFGFSGQGRA--IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL 679
            E++V K + ++ +P     +     VK+++I      +S ++ L       +   +Q    V+        V +     P   +   + P   +K    + N    +AV+S KGGVGKSTV+VNLA +LA +G +VG+ DAD+YG S+P M+      + + P  E   ++P E  GVK++S GF  +  A  + RGPM+  ++N      EWGE+DY+V+D+PPGTGD+ L
Sbjct:    4 EDEVRKLVGEMREPFLQRPLGELDAVKEIKIKPEKRHISVKVALAKTGTAEQMQIQQEIVNVLKGAG-AETVGLRFEELPEETVAKFRAPSAEKKTLLNMDNPPVFLAVASGKGGVGKSTVSVNLAISLARLGKKVGLIDADIYGFSVPDMMG-----ITVRPTIEGEKLLPVERFGVKVMSMGFFVEENAPVVWRGPMLGKMLNNFFHEVEWGEVDYIVLDLPPGTGDVAL 229          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: MRP_RICPR (Protein mrp homolog OS=Rickettsia prowazekii GN=mrp PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.672e-25
Identity = 63/159 (39.62%), Postives = 92/159 (57.86%), Query Frame = 2
Query:  221 VNKVNVTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            VNK+ +  +        A++    ++ +  I+ V+S KGGVGKST++  +A  L+    RVGI DAD+YGPS+P +       +    E R I+P     ++++S GF        I RGPM S +I QLL+ T W  LDYL+IDMPPGTGDI L++ +
Sbjct:   69 VNKITIVFTQSKTIDKKAQKPKHFVENVKKIILVASGKGGVGKSTISALIAQQLSLENYRVGIVDADIYGPSIPHIFGING--IPKTVEGR-IVPILAQNIQIISIGFFVKAHSAIIYRGPMASKIIYQLLSNTRWNNLDYLIIDMPPGTGDIHLSIIE 224          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: MRP_RICFE (Protein mrp homolog OS=Rickettsia felis GN=mrp PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.672e-25
Identity = 63/163 (38.65%), Postives = 93/163 (57.06%), Query Frame = 2
Query:  221 VNKVNVTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRT----IIPTEYLGVKLVSFGF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            +NK+ +  +        A++    ++ +  I+ V+S KGGVGKST++  +A  L+    RVGI DAD+YGPS+P        +  +N   +T    IIP     ++++S GF        I RGPM S  I QLL+ T+W  LDYL+IDMPPGTGDI L++ +
Sbjct:   69 INKITIVFTESKPMEKKAQKPKHFVENVKKIILVASGKGGVGKSTISALIAQQLSLENYRVGIVDADIYGPSIP-------HIFGINEVPKTKDGRIIPITVKSIQVISIGFFVKDHSAIIWRGPMASKTIYQLLSVTKWDNLDYLIIDMPPGTGDIHLSMLE 224          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: MRP_RICCN (Protein mrp homolog OS=Rickettsia conorii GN=mrp PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.709e-24
Identity = 72/210 (34.29%), Postives = 107/210 (50.95%), Query Frame = 2
Query:  107 INEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPARPIFAEQLP---------EGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRT----IIPTEYLGVKLVSFGF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            +NE + ++  +      +  I    +  A E+ L    +NK+N          +F E  P           ++ +  I+ V+S KGGVGKST++  +A  L+    RVGI DAD+YGPS+P        +  +N   +T    IIP     ++++S GF        I RGPM S  I QLL+ T+W  LDYL+IDMPPGTGDI L++ +
Sbjct:   24 LNEVISDIIIKGNNIGFSIDISGKNKLEAEEIRLKA--INKLNEISEVNKITIVFTESKPMEKKVQKPKHFVENVKKIILVASGKGGVGKSTISALIAQQLSLANYRVGIVDADIYGPSIP-------HIFGINEVPQTKDGRIIPVLAQSIEIISIGFFVKDHSAIIWRGPMASKTIYQLLSVTKWDNLDYLIIDMPPGTGDIHLSILE 224          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: MRP_RICBR (Protein mrp homolog OS=Rickettsia bellii (strain RML369-C) GN=mrp PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.915e-24
Identity = 66/181 (36.46%), Postives = 100/181 (55.25%), Query Frame = 2
Query:  167 IKDMFEQRANEVVLAIPWVNKVNVTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRT----IIPTEYLGVKLVSFGF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            IK+   ++ NE+V     + K+ +  +         ++    ++ +  I+ V+S KGGVGKST++  +A  L+    RVGI DAD+YGPS+P        +  +N   +T    IIP     ++++S GF        I RGPM S  I QLL+ T+W  LDYL+IDMPPGTGDI L++ +
Sbjct:   55 IKNTAIKKLNEIV----GIGKITIVFTESKTVEKKPQKPKHFVENVKKIILVASGKGGVGKSTISALIAQQLSLENHRVGIVDADIYGPSIP-------HIFGINEVPQTVGGRIIPVRAKNIEVISIGFFVKNYSAIIWRGPMASKTIYQLLSVTKWDNLDYLIIDMPPGTGDIHLSMLE 224          
The following BLAST results are available for this feature:
BLAST of FC875375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
NUBPL_DICDI5.134e-2948.15Nucleotide-binding protein-like OS=Dictyostelium d... [more]
MRP_MYCTU5.134e-2932.00Protein mrp homolog OS=Mycobacterium tuberculosis ... [more]
MRP_MYCBO5.134e-2932.00Protein mrp homolog OS=Mycobacterium bovis GN=mrp ... [more]
Y283_METJA4.806e-2747.52Uncharacterized ATP-binding protein MJ0283 OS=Meth... [more]
IND1_YARLI8.197e-2740.70Iron-sulfur protein IND1 OS=Yarrowia lipolytica GN... [more]
SALA_BACSU1.398e-2632.76Protein mrp homolog salA OS=Bacillus subtilis GN=s... [more]
MRP_RICPR7.672e-2539.62Protein mrp homolog OS=Rickettsia prowazekii GN=mr... [more]
MRP_RICFE7.672e-2538.65Protein mrp homolog OS=Rickettsia felis GN=mrp PE=... [more]
MRP_RICCN1.709e-2434.29Protein mrp homolog OS=Rickettsia conorii GN=mrp P... [more]
MRP_RICBR2.915e-2436.46Protein mrp homolog OS=Rickettsia bellii (strain R... [more]

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Properties
Property NameValue
Genbank descriptionC31403C04EF CTVClemen1 Citrus clementina cDNA clone C31403C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875375 ID=FC875375; Name=FC875375; organism=Citrus clementina; type=EST; length=693bp
ATCTACTGGAACAGCTGAGAATGATGTACTGAAAGCCTTGTCGCAAATTA
TTGATCCAGACTTTGGAACAGATATTGTCTCATGTGGTTTTGTGAAAGAT
ATGCAAATCAATGAAGCTCTGGGAGAGGTTTCCTTTCGGTTAGAGCTCAC
AACTCCAGCATGTCCAATCAAGGACATGTTTGAGCAAAGGGCAAATGAGG
TGGTGCTTGCAATTCCTTGGGTCAACAAAGTTAATGTGACTATGTCAGCA
CAACCAGCCAGACCTATTTTTGCAGAGCAACTTCCAGAAGGTTTACAGAA
AATTTCAAATATTGTGGCTGTTTCAAGTTGCAAGGGAGGTGTAGGGAAAT
CCACAGTAGCTGTAAATCTTGCTTACACTTTAGCAGGTATGGGTGCAAGG
GTTGGTATCTTTGATGCTGATGTCTATGGTCCGAGTTTACCAACAATGGT
CTCTCCAGAAAATCGACTGCTAGAGATGAATCCGGAGAAGAGAACAATTA
TTCCAACTGAATACCTGGGAGTCAAGTTGGTGTCTTTTGGATTTTCCGGG
CAAGGTCGTGCAATAATGCGAGGTCCAATGGTTTCTGGGGTCATCAACCA
ACTTCTGACAACAACTGAGTGGGGAGAGCTGGACTACCTTGTTATTGACA
TGCCTCCTGGAACTGGTGACATCCAACTTACTTTATGTCAGGT
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