FC875375

Overview
NameFC875375
Unique NameFC875375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP1_DROMO (Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Drosophila mojavensis GN=GI17051 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 46/136 (33.82%), Postives = 71/136 (52.21%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF---SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL 685
            ++ + + + + S KGGVGKSTV   L   LA     +  G+ D D+ GPS P ++      +  +    + +  +   V L+S GF   S     I RGP  +G+I Q L+  +WG LD L++D PPGT D  L++
Sbjct:   51 MKDVKHKLLILSGKGGVGKSTVTTLLTRYLARSYPDSNFGVLDIDICGPSQPRLLGAVGENVHQSGSGWSPVGIDD-NVCLMSIGFLLGSVDDAIIWRGPKKNGMIRQFLSEVDWGTLDLLLLDTPPGTSDEHLSV 185          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP1_DROVI (Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Drosophila virilis GN=GJ17301 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 46/136 (33.82%), Postives = 70/136 (51.47%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF---SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL 685
            ++ + + + + S KGGVGKSTV   L   LA        G+ D D+ GPS P ++      +  +    + +  +   V L+S GF   S     I RGP  +G+I Q L+  +WG LD L++D PPGT D  L++
Sbjct:   51 MKDVKHKLLILSGKGGVGKSTVTTLLTRYLARSYPDNNFGVLDIDICGPSQPRLLGALGENVHQSGSGWSPVGIDD-NVCLMSIGFLLGSVDDAVIWRGPKKNGMIRQFLSEVDWGNLDLLLLDTPPGTSDEHLSV 185          
The following BLAST results are available for this feature:
BLAST of FC875375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
NUBP1_DROMO3.343e-1233.82Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]
NUBP1_DROVI5.703e-1233.82Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]

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Properties
Property NameValue
Genbank descriptionC31403C04EF CTVClemen1 Citrus clementina cDNA clone C31403C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875375 ID=FC875375; Name=FC875375; organism=Citrus clementina; type=EST; length=693bp
ATCTACTGGAACAGCTGAGAATGATGTACTGAAAGCCTTGTCGCAAATTA
TTGATCCAGACTTTGGAACAGATATTGTCTCATGTGGTTTTGTGAAAGAT
ATGCAAATCAATGAAGCTCTGGGAGAGGTTTCCTTTCGGTTAGAGCTCAC
AACTCCAGCATGTCCAATCAAGGACATGTTTGAGCAAAGGGCAAATGAGG
TGGTGCTTGCAATTCCTTGGGTCAACAAAGTTAATGTGACTATGTCAGCA
CAACCAGCCAGACCTATTTTTGCAGAGCAACTTCCAGAAGGTTTACAGAA
AATTTCAAATATTGTGGCTGTTTCAAGTTGCAAGGGAGGTGTAGGGAAAT
CCACAGTAGCTGTAAATCTTGCTTACACTTTAGCAGGTATGGGTGCAAGG
GTTGGTATCTTTGATGCTGATGTCTATGGTCCGAGTTTACCAACAATGGT
CTCTCCAGAAAATCGACTGCTAGAGATGAATCCGGAGAAGAGAACAATTA
TTCCAACTGAATACCTGGGAGTCAAGTTGGTGTCTTTTGGATTTTCCGGG
CAAGGTCGTGCAATAATGCGAGGTCCAATGGTTTCTGGGGTCATCAACCA
ACTTCTGACAACAACTGAGTGGGGAGAGCTGGACTACCTTGTTATTGACA
TGCCTCCTGGAACTGGTGACATCCAACTTACTTTATGTCAGGT
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