FC875375

Overview
NameFC875375
Unique NameFC875375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: MRP_CLOPE (Protein mrp homolog OS=Clostridium perfringens GN=mrp PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.808e-24
Identity = 64/140 (45.71%), Postives = 87/140 (62.14%), Query Frame = 2
Query:  302 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---LLEMNPEKRTI----IPTEYLGVKLVSFGFSGQGR---AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            I N++ V S KGGVGKSTV   LA  LA  G +VG+ DAD+ GPS+P       +   ++ M+ E + +    + TE LG+K++S     +      I RGPMV+GV+NQ+   T+W ELDYL+IDMPPGT DI LT+ Q
Sbjct:   37 IKNVIGVISGKGGVGKSTVTGILATQLAKKGYKVGVLDADITGPSMPRFFGINEKRADIVAMDSEGKQVKFVPVKTE-LGIKVISMNLLMEVEDDPVIWRGPMVTGVLNQMFKDTDWEELDYLLIDMPPGTSDITLTVMQ 175          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: MRP_RICTY (Protein mrp homolog OS=Rickettsia typhi GN=mrp PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.973e-24
Identity = 62/159 (38.99%), Postives = 92/159 (57.86%), Query Frame = 2
Query:  221 VNKVNVTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            VN + +  + +      A++    ++ +  I+ V+S KGGVGKST++  +A  L+    +VGI DAD+YGPS+P +       +    E R IIP     ++++S GF        I RGPM S +I QLL+ T W  LDYL+IDMPPGTGDI L++ +
Sbjct:   69 VNNITIVFTQKKTIDKKAQKPKHFVENVKKIILVASGKGGVGKSTISALIAQQLSLENYQVGIVDADIYGPSIPHIFGINE--IPKTVEGR-IIPILAQNIQIISIGFFVKAHSAIIYRGPMASKIIYQLLSNTRWNNLDYLIIDMPPGTGDIHLSMLE 224          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBPL_MOUSE (Nucleotide-binding protein-like OS=Mus musculus GN=Nubpl PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.495e-24
Identity = 63/140 (45.00%), Postives = 86/140 (61.43%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR--VGIFDADVYGPSLPTMVSPENRLLEMNPE---KRTIIPTEYLGVKLVSFGFSGQGRA--IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            ++ +  ++ V+S KGGVGKST AVNLA  LA   +   VG+ D DVYGPS+P M++     L  NPE      + P    G+  +S GF  +  A  + RG MV   I +LL   +WG+LDYLV+DMPPGTGD+QL++ Q
Sbjct:   63 IEGVREVIVVASGKGGVGKSTTAVNLALALAANDSSKAVGLLDVDVYGPSIPKMMN-----LRGNPELSPNNLMRPLLNYGIACMSMGFLVEETAPLVWRGLMVMSAIEKLLRQVDWGQLDYLVVDMPPGTGDVQLSVSQ 197          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBPL_HUMAN (Nucleotide-binding protein-like OS=Homo sapiens GN=NUBPL PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.890e-23
Identity = 61/140 (43.57%), Postives = 86/140 (61.43%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR--VGIFDADVYGPSLPTMVSPENRLLEMNPE---KRTIIPTEYLGVKLVSFGFSGQGR--AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            ++ +  ++ V+S KGGVGKST AVNLA  LA   +   +G+ D DVYGPS+P M++     L+ NPE      + P    G+  +S GF  +     + RG MV   I +LL   +WG+LDYLV+DMPPGTGD+QL++ Q
Sbjct:   63 IEGVKQVIVVASGKGGVGKSTTAVNLALALAANDSSKAIGLLDVDVYGPSVPKMMN-----LKGNPELSQSNLMRPLLNYGIACMSMGFLVEESEPVVWRGLMVMSAIEKLLRQVDWGQLDYLVVDMPPGTGDVQLSVSQ 197          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP2_NEMVE (Cytosolic Fe-S cluster assembly factor NUBP2 homolog OS=Nematostella vectensis GN=v1g229988 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.600e-22
Identity = 57/143 (39.86%), Postives = 87/143 (60.84%), Query Frame = 2
Query:  281 LPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTII---PTEYLGVKLVSFGF---SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            +P+GL+ + +I+ V S KGGVGKSTVA  L++ L   G +VG+ D D+ GPS+P M++ EN  +    +    +   P + LGV  +S GF   S +   + RGP  + +I Q L+   WG++DYL+ID PPGT D  +T+ +
Sbjct:    5 VPQGLRSVKHIILVLSGKGGVGKSTVATQLSWALYNQGNKVGLLDIDLCGPSIPRMMNVENNDVHQCSDGWVPVYTGPDQRLGV--MSIGFLLHSKEDAVVWRGPKKNAMIKQFLSDVCWGDIDYLIIDTPPGTSDEHITVVE 145          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: CFD1_KLULA (Cytosolic Fe-S cluster assembly factor CFD1 OS=Kluyveromyces lactis GN=CFD1 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.940e-22
Identity = 59/143 (41.26%), Postives = 83/143 (58.04%), Query Frame = 2
Query:  281 LPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEK--RTIIPTEYLG-VKLVSFGFSGQGR---AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            +PE L+ I +I+ V S KGGVGKS+V    A TL   G +VG+ D D+ GPSLP M   EN+ +    +      +PT   G +KL+S GF    R    + RGP  S +I Q +   +WG+LDYL+ID PPGT D  +++ +
Sbjct:   10 MPESLKDIKHIILVLSGKGGVGKSSVTTQTALTLCLKGYKVGVLDIDLTGPSLPRMFGLENKQVYQASKGWIPVSVPTTSGGELKLMSLGFLLDDRGNSVVWRGPKKSAMIKQFIKDVDWGDLDYLIIDTPPGTSDEHISIAE 152          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: Y949_PYRHO (Uncharacterized ATP-binding protein PH0949 OS=Pyrococcus horikoshii GN=PH0949 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.940e-21
Identity = 65/152 (42.76%), Postives = 91/152 (59.87%), Query Frame = 2
Query:  275 EQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEK-----RTIIP--TEYLG----VKLVSFGF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            +++ E  +K    +AV S KGGVGKSTVAVNL   LA MG  VGI DAD++GP++  M+  +    E+  EK       +IP  T+++G    +K++S G         I RGP+V+  I QLL   +WG LD+++ID PPGTGD  LT+ Q
Sbjct:   20 QRIKEKEKKWKYKIAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVDKE--EVYAEKFDDGHFEMIPPTTDFMGQVTPIKVMSMGMMVPEDQPVIWRGPLVTKAIKQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQ 169          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: CFD1_YEAST (Cytosolic Fe-S cluster assembly factor CFD1 OS=Saccharomyces cerevisiae GN=CFD1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.940e-21
Identity = 56/139 (40.29%), Postives = 82/139 (58.99%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPE--KRTIIPTEYLG-VKLVSFGF--SGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L  I +I+ + S KGGVGKS+V    A TL  MG +VG+ D D+ GPSLP M   EN  +   PE  +   + T   G + ++S GF    +G +++ RGP  + +I Q ++   WGELDYL+ID PPGT D  +++ +
Sbjct:   13 LAGIKHIILILSGKGGVGKSSVTTQTALTLCSMGFKVGVLDIDLTGPSLPRMFGLENESIYQGPEGWQPVKVETNSTGSLSVISLGFLLGDRGNSVIWRGPKKTSMIKQFISDVAWGELDYLLIDTPPGTSDEHISIAE 151          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: CFD1_CANGA (Cytosolic Fe-S cluster assembly factor CFD1 OS=Candida glabrata GN=CFD1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21
Identity = 58/141 (41.13%), Postives = 82/141 (58.16%), Query Frame = 2
Query:  287 EGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLG---VKLVSFGF--SGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            + L  I +I+ V S KGGVGKS+V    A TL GMG  VG+ D D+ GPSLP M   E+  +  + +    IP E  G   + +VS GF    +G +++ RGP  + +I Q +    WGELDYL+ID PPGT D  +++ +
Sbjct:   16 KSLSLIKHILLVLSGKGGVGKSSVTTQTALTLCGMGYNVGVLDIDLTGPSLPRMFGIEDSSIYQSADGWMPIPVETNGKGKLCVVSLGFLLGSRGTSVVWRGPKKTSMIRQFIKDVTWGELDYLLIDTPPGTSDEHISIAE 156          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: CFD1_ASHGO (Cytosolic Fe-S cluster assembly factor CFD1 OS=Ashbya gossypii GN=CFD1 PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21
Identity = 59/143 (41.26%), Postives = 82/143 (57.34%), Query Frame = 2
Query:  284 PEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEK--RTIIPT--EYLGVKLVSFGFSGQGR---AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            PE L++I +IV V S KGGVGKS+V   L   LA  G +VGI D D+ GPSLP MV  E + +   P       +PT  E   ++++S GF    R    + RGP  + +I Q ++   WG LDYL+ID PPGT D  +++ +
Sbjct:    9 PESLREIEHIVLVLSGKGGVGKSSVTTQLGMALACRGLKVGILDIDLTGPSLPRMVGMEGKSVLQGPRGWIPVDVPTGMEQGCLRVMSLGFLLDDRGDSVVWRGPKKTAMIKQFISDVYWGALDYLLIDTPPGTSDEHISIAE 151          
The following BLAST results are available for this feature:
BLAST of FC875375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
MRP_CLOPE3.808e-2445.71Protein mrp homolog OS=Clostridium perfringens GN=... [more]
MRP_RICTY4.973e-2438.99Protein mrp homolog OS=Rickettsia typhi GN=mrp PE=... [more]
NUBPL_MOUSE6.495e-2445.00Nucleotide-binding protein-like OS=Mus musculus GN... [more]
NUBPL_HUMAN1.890e-2343.57Nucleotide-binding protein-like OS=Homo sapiens GN... [more]
NUBP2_NEMVE1.600e-2239.86Cytosolic Fe-S cluster assembly factor NUBP2 homol... [more]
CFD1_KLULA7.940e-2241.26Cytosolic Fe-S cluster assembly factor CFD1 OS=Klu... [more]
Y949_PYRHO3.940e-2142.76Uncharacterized ATP-binding protein PH0949 OS=Pyro... [more]
CFD1_YEAST3.940e-2140.29Cytosolic Fe-S cluster assembly factor CFD1 OS=Sac... [more]
CFD1_CANGA6.721e-2141.13Cytosolic Fe-S cluster assembly factor CFD1 OS=Can... [more]
CFD1_ASHGO6.721e-2141.26Cytosolic Fe-S cluster assembly factor CFD1 OS=Ash... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31403C04EF CTVClemen1 Citrus clementina cDNA clone C31403C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875375 ID=FC875375; Name=FC875375; organism=Citrus clementina; type=EST; length=693bp
ATCTACTGGAACAGCTGAGAATGATGTACTGAAAGCCTTGTCGCAAATTA
TTGATCCAGACTTTGGAACAGATATTGTCTCATGTGGTTTTGTGAAAGAT
ATGCAAATCAATGAAGCTCTGGGAGAGGTTTCCTTTCGGTTAGAGCTCAC
AACTCCAGCATGTCCAATCAAGGACATGTTTGAGCAAAGGGCAAATGAGG
TGGTGCTTGCAATTCCTTGGGTCAACAAAGTTAATGTGACTATGTCAGCA
CAACCAGCCAGACCTATTTTTGCAGAGCAACTTCCAGAAGGTTTACAGAA
AATTTCAAATATTGTGGCTGTTTCAAGTTGCAAGGGAGGTGTAGGGAAAT
CCACAGTAGCTGTAAATCTTGCTTACACTTTAGCAGGTATGGGTGCAAGG
GTTGGTATCTTTGATGCTGATGTCTATGGTCCGAGTTTACCAACAATGGT
CTCTCCAGAAAATCGACTGCTAGAGATGAATCCGGAGAAGAGAACAATTA
TTCCAACTGAATACCTGGGAGTCAAGTTGGTGTCTTTTGGATTTTCCGGG
CAAGGTCGTGCAATAATGCGAGGTCCAATGGTTTCTGGGGTCATCAACCA
ACTTCTGACAACAACTGAGTGGGGAGAGCTGGACTACCTTGTTATTGACA
TGCCTCCTGGAACTGGTGACATCCAACTTACTTTATGTCAGGT
back to top