FC875375

Overview
NameFC875375
Unique NameFC875375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP2_DROSI (Cytosolic Fe-S cluster assembly factor NUBP2 homolog OS=Drosophila simulans GN=GD14899 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.956e-20
Identity = 54/137 (39.42%), Postives = 80/137 (58.39%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-LLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR---AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L K+ N++ V S KGGVGKSTV+  L+  L   G +VG+ D D+ GPS+P ++  E R + + +     +   E+  + ++S GF  + R    I RGP  + +I Q LT   W ELDYL+ID PPGT D  +T+ +
Sbjct:    2 LDKVKNVIVVLSGKGGVGKSTVSTQLSLALRKNGFKVGLLDIDLCGPSVPYLLGLEGRDIFQCDEGWVPVYTDEFQTLAVMSIGFLLKNREDPVIWRGPKKTMMIRQFLTDVRWDELDYLIIDTPPGTSDEHITVME 138          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP2_DROGR (Cytosolic Fe-S cluster assembly factor NUBP2 homolog OS=Drosophila grimshawi GN=GH14587 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.554e-20
Identity = 55/137 (40.15%), Postives = 80/137 (58.39%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-LLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR---AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L K+ N++ V S KGGVGKSTV+  LA  L   G +VG+ D D+ GPS+P ++  E R + + +     I   E   + ++S GF  + R    I RGP  + +I Q L+  +W ELDYL+ID PPGT D  +T+ +
Sbjct:    2 LDKVKNVIVVLSGKGGVGKSTVSTQLALALRATGHKVGLLDIDLCGPSVPYLLGLEGRDIFQCDDGWVPIYTDESKTLAVMSIGFLLKNRTDPVIWRGPKKTMMIKQFLSDVKWDELDYLIIDTPPGTSDEHITVME 138          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP2_DROMO (Cytosolic Fe-S cluster assembly factor NUBP2 homolog OS=Drosophila mojavensis GN=GI13405 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 55/137 (40.15%), Postives = 80/137 (58.39%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-LLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR---AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L K+ N++ V S KGGVGKSTV+  LA  L   G +VG+ D D+ GPS+P ++  E R + + +     I   E   + ++S GF  + R    I RGP  + +I Q LT  +W +LDYL+ID PPGT D  +T+ +
Sbjct:    2 LDKVKNVIVVLSGKGGVGKSTVSTQLALALRATGHKVGLLDIDLCGPSVPHLLGLEGRDIYQCDDGWVPIYTDESKTLAVMSIGFLLKNRNDPVIWRGPKKTMMIKQFLTDVKWEDLDYLIIDTPPGTSDEHITVME 138          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP2_DROER (Cytosolic Fe-S cluster assembly factor NUBP2 homolog OS=Drosophila erecta GN=GG16127 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 55/137 (40.15%), Postives = 80/137 (58.39%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-LLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR---AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L+K+ NI+ V S KGGVGKSTV+  L+  L   G +VG+ D D+ GPS+P ++  E R + + +     +   E   + ++S GF  + R    I RGP  + +I Q LT   W ELDYL+ID PPGT D  +T+ +
Sbjct:    2 LEKVKNIIVVLSGKGGVGKSTVSTQLSLALRKNGFKVGLLDIDLCGPSVPYLLGLEGRDIFQCDEGWVPVYTDESQTLAVMSIGFLLKNREDPVIWRGPKKTMMIRQFLTDVRWDELDYLIIDTPPGTSDEHITVME 138          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NBP22_DROYA (Cytosolic Fe-S cluster assembly factor NUBP2 homolog 2 OS=Drosophila yakuba GN=GE19695 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 55/137 (40.15%), Postives = 80/137 (58.39%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-LLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR---AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L+K+ NI+ V S KGGVGKSTV+  L+  L   G +VG+ D D+ GPS+P ++  E R + + +     +   E   + ++S GF  + R    I RGP  + +I Q LT   W ELDYL+ID PPGT D  +T+ +
Sbjct:    2 LEKVKNIIVVLSGKGGVGKSTVSTQLSLALRKNGFKVGLLDIDLCGPSVPYLLGLEGRDIFQCDEGWVPVYTDESQTLAVMSIGFLLKNREDPVIWRGPKKTMMIRQFLTDVRWDELDYLIIDTPPGTSDEHITVME 138          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NBP21_DROYA (Cytosolic Fe-S cluster assembly factor NUBP2 homolog 1 OS=Drosophila yakuba GN=GE23241 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 55/137 (40.15%), Postives = 80/137 (58.39%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-LLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR---AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L+K+ NI+ V S KGGVGKSTV+  L+  L   G +VG+ D D+ GPS+P ++  E R + + +     +   E   + ++S GF  + R    I RGP  + +I Q LT   W ELDYL+ID PPGT D  +T+ +
Sbjct:    2 LEKVKNIIVVLSGKGGVGKSTVSTQLSLALRKNGFKVGLLDIDLCGPSVPYLLGLEGRDIFQCDEGWVPVYTDESQTLAVMSIGFLLKNREDPVIWRGPKKTMMIRQFLTDVRWDELDYLIIDTPPGTSDEHITVME 138          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: CFD1_YARLI (Cytosolic Fe-S cluster assembly factor CFD1 OS=Yarrowia lipolytica GN=CFD1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 57/144 (39.58%), Postives = 83/144 (57.64%), Query Frame = 2
Query:  272 AEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTE-YLGVKLVSFGF--SGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            A Q    L  + NIV V S KGGVGKS+V   LA TLA  G +VG+ D D+ GPS+P     E++ +  +      + T+    + L+S GF  S +G +++ RGP  + +I Q +    WGELDYL+ID PPGT D  +++ +
Sbjct:    5 ATQSSPSLAGVKNIVLVLSGKGGVGKSSVTTQLALTLAAQGKKVGVLDIDLTGPSIPRFFGMEDKQVYQSSAGWVPVYTDASRNLCLMSLGFLLSSRGDSVVWRGPRKTAMIRQFIRDVVWGELDYLLIDTPPGTSDEHISIAE 148          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: Y851_PYRAB (Uncharacterized ATP-binding protein PYRAB08510 OS=Pyrococcus abyssi GN=PYRAB08510 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.690e-20
Identity = 65/152 (42.76%), Postives = 89/152 (58.55%), Query Frame = 2
Query:  275 EQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEK-----RTIIP--TEYLG----VKLVSFGF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            +++ E  +K    VAV S KGGVGKSTVAVNL   LA MG  VGI DAD++GP++  M+  E    E+  EK       +IP   +++G    +K++S G         I RG +V+  I QLL   +WG LD+++ID PPGTGD  LT+ Q
Sbjct:   20 QRIKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKE--EIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQ 169          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP2_DROSE (Cytosolic Fe-S cluster assembly factor NUBP2 homolog OS=Drosophila sechellia GN=GM22307 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.431e-20
Identity = 54/137 (39.42%), Postives = 79/137 (57.66%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-LLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR---AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L K+ N++ V S KGGVGKSTV+  L+  L   G +VG+ D D+ GPS+P ++  E R + + +     +   E   + ++S GF  + R    I RGP  + +I Q LT   W ELDYL+ID PPGT D  +T+ +
Sbjct:    2 LDKVKNVIVVLSGKGGVGKSTVSTQLSLALRKNGFKVGLLDIDLCGPSVPYLLGLEGRDIFQCDEGWVPVYTDESQTLAVMSIGFLLKNREDPVIWRGPKKTMMIRQFLTDVRWDELDYLIIDTPPGTSDEHITVME 138          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP2_DROME (Cytosolic Fe-S cluster assembly factor NUBP2 homolog OS=Drosophila melanogaster GN=CG4858 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.431e-20
Identity = 54/137 (39.42%), Postives = 79/137 (57.66%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-LLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR---AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L K+ N++ V S KGGVGKSTV+  L+  L   G +VG+ D D+ GPS+P ++  E R + + +     +   E   + ++S GF  + R    I RGP  + +I Q LT   W ELDYL+ID PPGT D  +T+ +
Sbjct:    2 LDKVKNVIVVLSGKGGVGKSTVSTQLSLALRKNGFKVGLLDIDLCGPSVPYLLGLEGRDIFQCDDGWVPVYTDESQTLAVMSIGFLLKNREDPVIWRGPKKTMMIRQFLTDVRWDELDYLIIDTPPGTSDEHITVME 138          
The following BLAST results are available for this feature:
BLAST of FC875375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
NUBP2_DROSI1.956e-2039.42Cytosolic Fe-S cluster assembly factor NUBP2 homol... [more]
NUBP2_DROGR2.554e-2040.15Cytosolic Fe-S cluster assembly factor NUBP2 homol... [more]
NUBP2_DROMO3.336e-2040.15Cytosolic Fe-S cluster assembly factor NUBP2 homol... [more]
NUBP2_DROER3.336e-2040.15Cytosolic Fe-S cluster assembly factor NUBP2 homol... [more]
NBP22_DROYA3.336e-2040.15Cytosolic Fe-S cluster assembly factor NUBP2 homol... [more]
NBP21_DROYA3.336e-2040.15Cytosolic Fe-S cluster assembly factor NUBP2 homol... [more]
CFD1_YARLI3.336e-2039.58Cytosolic Fe-S cluster assembly factor CFD1 OS=Yar... [more]
Y851_PYRAB5.690e-2042.76Uncharacterized ATP-binding protein PYRAB08510 OS=... [more]
NUBP2_DROSE7.431e-2039.42Cytosolic Fe-S cluster assembly factor NUBP2 homol... [more]
NUBP2_DROME7.431e-2039.42Cytosolic Fe-S cluster assembly factor NUBP2 homol... [more]

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Properties
Property NameValue
Genbank descriptionC31403C04EF CTVClemen1 Citrus clementina cDNA clone C31403C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875375 ID=FC875375; Name=FC875375; organism=Citrus clementina; type=EST; length=693bp
ATCTACTGGAACAGCTGAGAATGATGTACTGAAAGCCTTGTCGCAAATTA
TTGATCCAGACTTTGGAACAGATATTGTCTCATGTGGTTTTGTGAAAGAT
ATGCAAATCAATGAAGCTCTGGGAGAGGTTTCCTTTCGGTTAGAGCTCAC
AACTCCAGCATGTCCAATCAAGGACATGTTTGAGCAAAGGGCAAATGAGG
TGGTGCTTGCAATTCCTTGGGTCAACAAAGTTAATGTGACTATGTCAGCA
CAACCAGCCAGACCTATTTTTGCAGAGCAACTTCCAGAAGGTTTACAGAA
AATTTCAAATATTGTGGCTGTTTCAAGTTGCAAGGGAGGTGTAGGGAAAT
CCACAGTAGCTGTAAATCTTGCTTACACTTTAGCAGGTATGGGTGCAAGG
GTTGGTATCTTTGATGCTGATGTCTATGGTCCGAGTTTACCAACAATGGT
CTCTCCAGAAAATCGACTGCTAGAGATGAATCCGGAGAAGAGAACAATTA
TTCCAACTGAATACCTGGGAGTCAAGTTGGTGTCTTTTGGATTTTCCGGG
CAAGGTCGTGCAATAATGCGAGGTCCAATGGTTTCTGGGGTCATCAACCA
ACTTCTGACAACAACTGAGTGGGGAGAGCTGGACTACCTTGTTATTGACA
TGCCTCCTGGAACTGGTGACATCCAACTTACTTTATGTCAGGT
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