FC875375

Overview
NameFC875375
Unique NameFC875375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP2_DROAN (Cytosolic Fe-S cluster assembly factor NUBP2 homolog OS=Drosophila ananassae GN=GF10354 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.431e-20
Identity = 55/137 (40.15%), Postives = 80/137 (58.39%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE-NRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR---AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L K+ N++ V S KGGVGKSTV+  LA  L   G +VG+ D D+ GPS+P ++  E + + + +     I   E   + ++S GF  + R    I RGP  + +I Q LT  +W ELDYL+ID PPGT D  +T+ +
Sbjct:    2 LDKVKNVIVVLSGKGGVGKSTVSTQLALALRQTGHKVGLLDIDLCGPSVPYLLGLEGSDIFQCDEGWVPIYTDESQTLAVMSIGFLLKNRTDPVIWRGPKKTMMIRQFLTDVKWDELDYLIIDTPPGTSDEHITVME 138          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: CFD1_CRYNE (Cytosolic Fe-S cluster assembly factor CFD1 OS=Cryptococcus neoformans GN=CFD1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.705e-20
Identity = 56/139 (40.29%), Postives = 77/139 (55.40%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGA--RVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPT-----EYLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL 685
            L  + NI+ V S KGGVGKS+ +V LA +L       RVG+ D D+ GPSLP MV  +     ++      +P        LGV  + F    +G +++ RGP   G+I Q L+   WG+LDYLVID PPGT D  ++L
Sbjct:   13 LSTVKNIIIVLSGKGGVGKSSSSVQLALSLLAQSPTNRVGLIDLDITGPSLPRMVGLDTPTATVHQSSAGWVPVYVDQGRRLGVMSIGFLLKDRGDSVVWRGPKKDGMIRQFLSEVRWGDLDYLVIDTPPGTSDEHISL 151          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: Y1145_PYRFU (Uncharacterized ATP-binding protein PF1145 OS=Pyrococcus furiosus GN=PF1145 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 65/152 (42.76%), Postives = 88/152 (57.89%), Query Frame = 2
Query:  275 EQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEK------RTIIPT-EYLG----VKLVSFGF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            +++ E  +K    +AV S KGGVGKSTVAVNL   LA MG  VGI DAD++GP++  M    N   ++  EK        I PT +++G    +K++S G         I RG +V+  I QLL    WGELD+++ID PPGTGD  LT+ Q
Sbjct:   20 QRIKEKEKKWKYKIAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMFGIGN--TDIYAEKFEDGHFEMIPPTVDFMGQVTPIKVMSMGMMVPEDQPIIWRGSLVTKAIKQLLGDVMWGELDFMIIDFPPGTGDEILTVVQ 169          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP2_CULQU (Cytosolic Fe-S cluster assembly factor NUBP2 homolog OS=Culex quinquefasciatus GN=CPIJ017390 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.656e-19
Identity = 56/139 (40.29%), Postives = 81/139 (58.27%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPT-----EYLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L KI +I+ V S KGGVGKSTV+  LA TLA  G +VG+ D D+ GPS+P ++  E    +++  ++  +P      + L V  + F    +  A++ RGP  + +I Q L    W ELDYLVID PPGT D  +T+ +
Sbjct:    2 LDKIKHIILVLSGKGGVGKSTVSTQLALTLAESGHKVGLLDIDLCGPSVPFLLGLEGH--DVHQCEQGWVPVFSGADQRLAVMSIGFLLKNRDEAVIWRGPKKTAMIKQFLEDVAWDELDYLVIDTPPGTSDEHITVME 138          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP2_ANOGA (Cytosolic Fe-S cluster assembly factor NUBP2 homolog OS=Anopheles gambiae GN=AGAP010873 PE=3 SV=4)

HSP 1 Score: 96.2857 bits (238), Expect = 1.656e-19
Identity = 56/137 (40.88%), Postives = 80/137 (58.39%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTE-YLGVKLVSFGFSGQGRA---IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L K+ +I+ V S KGGVGKSTV+  LA TLA    +VG+ D D+ GPS+P ++  E+R +    E    + T     + ++S GF  + R+   I RGP  + +I Q L    W ELDYL+ID PPGT D  +T+ +
Sbjct:    2 LDKVKHIILVLSGKGGVGKSTVSTQLALTLAEADHKVGLLDIDLCGPSVPYLLGLEDRDVHQCDEGWVPVYTSAEKRLAVMSIGFLLKNRSDAVIWRGPKKTAMIKQFLEDVNWDELDYLIIDTPPGTSDEHITVME 138          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP2_DROPS (Cytosolic Fe-S cluster assembly factor NUBP2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA18483 PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 56/137 (40.88%), Postives = 79/137 (57.66%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTE-YLGVKLVSFGFSGQGR---AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L K+ N++ V S KGGVGKSTV+  LA  L   G +VG+ D D+ GPS+P ++  E   +    E    I T+    + ++S GF  + R    I RGP  + +I Q LT  +W ELDYL+ID PPGT D  +T+ +
Sbjct:    2 LDKVKNVIIVLSGKGGVGKSTVSTQLALALRHSGHKVGLLDIDLCGPSVPFLLGLEGSNIYQCDEGWVPIYTDASKTLAVMSIGFLLKNRTDPVIWRGPKKTMMIRQFLTDVKWEELDYLIIDTPPGTSDEHITVME 138          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP2_DROPE (Cytosolic Fe-S cluster assembly factor NUBP2 homolog OS=Drosophila persimilis GN=GL12799 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 56/137 (40.88%), Postives = 79/137 (57.66%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTE-YLGVKLVSFGFSGQGR---AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L K+ N++ V S KGGVGKSTV+  LA  L   G +VG+ D D+ GPS+P ++  E   +    E    I T+    + ++S GF  + R    I RGP  + +I Q LT  +W ELDYL+ID PPGT D  +T+ +
Sbjct:    2 LDKVKNVIIVLSGKGGVGKSTVSTQLALALRHSGHKVGLLDIDLCGPSVPFLLGLEGSNIYQCDEGWVPIYTDASKTLAVMSIGFLLKNRTDPVIWRGPKKTMMIRQFLTDVKWEELDYLIIDTPPGTSDEHITVME 138          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: CFD1_ASPTN (Cytosolic Fe-S cluster assembly factor cfd1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=cfd1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 55/146 (37.67%), Postives = 76/146 (52.05%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYL----------GVKLVSFGFSGQGR---AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L  + NIV V S KGGVGKS+V + LA  L   G  VGI D D+ GPS+P +V  E+  +  +P     +P               ++ +S GF  + R    I RGP  + +I Q L+   WGE DYL++D PPGT D  + L +
Sbjct:    3 LDGVKNIVLVLSGKGGVGKSSVTLQLALALTLQGKSVGILDIDLTGPSIPRLVGLEDAKITQSPAGWVPVPVHSATDNATGPATGSLRCISLGFLLRDRGDAVIWRGPKKTAMIRQFLSDVSWGETDYLLVDTPPGTSDEHIALAE 148          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP2_DROVI (Cytosolic Fe-S cluster assembly factor NUBP2 homolog OS=Drosophila virilis GN=GJ11530 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.688e-19
Identity = 53/137 (38.69%), Postives = 79/137 (57.66%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE-NRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR---AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L K+ N++ V S KGGVGKSTV+  LA  L   G +VG+ D D+ GPS+P ++  E + + +       I   E   + ++S GF  + R    I RGP  + +I Q LT  +W ++DYL+ID PPGT D  +T+ +
Sbjct:    2 LDKVKNVIVVLSGKGGVGKSTVSTQLALALRATGHKVGLLDIDLCGPSVPYLLGLEGSDIYQCEDGWVPIYTDESKTLAVMSIGFLLKNRNDPVIWRGPKKTMMIRQFLTDVKWEDMDYLIIDTPPGTSDEHITVME 138          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP2_DROWI (Cytosolic Fe-S cluster assembly factor NUBP2 homolog OS=Drosophila willistoni GN=GK12055 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 54/137 (39.42%), Postives = 79/137 (57.66%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE-NRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR---AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L K+ N++ V S KGGVGKSTV+  LA  L   G +VG+ D D+ GPS+P ++  E + + + +     I   E   + ++S GF  + R    I RGP  + +I Q L   +W ELDYL+ID PPGT D  +T+ +
Sbjct:    2 LDKVKNVIVVLSGKGGVGKSTVSTQLALALRHTGHKVGLLDIDLCGPSVPYLLGLEGSDIYQCDDGWVPIYTDESKTLAVMSIGFLLKSRTDPVIWRGPKKTMMIKQFLQDVKWDELDYLIIDTPPGTSDEHITVME 138          
The following BLAST results are available for this feature:
BLAST of FC875375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
NUBP2_DROAN7.431e-2040.15Cytosolic Fe-S cluster assembly factor NUBP2 homol... [more]
CFD1_CRYNE9.705e-2040.29Cytosolic Fe-S cluster assembly factor CFD1 OS=Cry... [more]
Y1145_PYRFU1.268e-1942.76Uncharacterized ATP-binding protein PF1145 OS=Pyro... [more]
NUBP2_CULQU1.656e-1940.29Cytosolic Fe-S cluster assembly factor NUBP2 homol... [more]
NUBP2_ANOGA1.656e-1940.88Cytosolic Fe-S cluster assembly factor NUBP2 homol... [more]
NUBP2_DROPS2.162e-1940.88Cytosolic Fe-S cluster assembly factor NUBP2 homol... [more]
NUBP2_DROPE2.162e-1940.88Cytosolic Fe-S cluster assembly factor NUBP2 homol... [more]
CFD1_ASPTN2.162e-1937.67Cytosolic Fe-S cluster assembly factor cfd1 OS=Asp... [more]
NUBP2_DROVI3.688e-1938.69Cytosolic Fe-S cluster assembly factor NUBP2 homol... [more]
NUBP2_DROWI4.817e-1939.42Cytosolic Fe-S cluster assembly factor NUBP2 homol... [more]

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Properties
Property NameValue
Genbank descriptionC31403C04EF CTVClemen1 Citrus clementina cDNA clone C31403C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875375 ID=FC875375; Name=FC875375; organism=Citrus clementina; type=EST; length=693bp
ATCTACTGGAACAGCTGAGAATGATGTACTGAAAGCCTTGTCGCAAATTA
TTGATCCAGACTTTGGAACAGATATTGTCTCATGTGGTTTTGTGAAAGAT
ATGCAAATCAATGAAGCTCTGGGAGAGGTTTCCTTTCGGTTAGAGCTCAC
AACTCCAGCATGTCCAATCAAGGACATGTTTGAGCAAAGGGCAAATGAGG
TGGTGCTTGCAATTCCTTGGGTCAACAAAGTTAATGTGACTATGTCAGCA
CAACCAGCCAGACCTATTTTTGCAGAGCAACTTCCAGAAGGTTTACAGAA
AATTTCAAATATTGTGGCTGTTTCAAGTTGCAAGGGAGGTGTAGGGAAAT
CCACAGTAGCTGTAAATCTTGCTTACACTTTAGCAGGTATGGGTGCAAGG
GTTGGTATCTTTGATGCTGATGTCTATGGTCCGAGTTTACCAACAATGGT
CTCTCCAGAAAATCGACTGCTAGAGATGAATCCGGAGAAGAGAACAATTA
TTCCAACTGAATACCTGGGAGTCAAGTTGGTGTCTTTTGGATTTTCCGGG
CAAGGTCGTGCAATAATGCGAGGTCCAATGGTTTCTGGGGTCATCAACCA
ACTTCTGACAACAACTGAGTGGGGAGAGCTGGACTACCTTGTTATTGACA
TGCCTCCTGGAACTGGTGACATCCAACTTACTTTATGTCAGGT
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