FC875375

Overview
NameFC875375
Unique NameFC875375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP2_TRIAD (Cytosolic Fe-S cluster assembly factor NUBP2 homolog OS=Trichoplax adhaerens GN=TRIADDRAFT_53697 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.291e-19
Identity = 53/135 (39.26%), Postives = 78/135 (57.78%), Query Frame = 2
Query:  299 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTII---PTEYLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            KI ++V + S KGGVGKSTVA  +A  LA  G +VGI D D+ GPS+P ++  E++ +    +    +     E L V  + F       A++ RGP  + +I Q L+   WG+LDYL+ID PPGT D  +T+ +
Sbjct:   12 KIKSVVLILSGKGGVGKSTVASQIALELANGGNKVGILDVDLCGPSIPRVLGLEDKDVHQCADGWIPVYADKNEKLAVMSIGFLLRNSKDAVVWRGPKKNAMIKQFLSDVVWGDLDYLIIDTPPGTSDEHITVAE 146          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP2_HUMAN (Cytosolic Fe-S cluster assembly factor NUBP2 OS=Homo sapiens GN=NUBP2 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.291e-19
Identity = 51/133 (38.35%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  284 PEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL-EMNPEKRTIIPTEYLGVKLVSFGF---SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD 670
            P  L  + +I+ V S KGGVGKST++  LA  L   G +VGI D D+ GPS+P M+  + R + + +     +       + L+S GF         + RGP  + +I Q ++   WGELDYLV+D PPGT D
Sbjct:    7 PGNLAGVRHIILVLSGKGGVGKSTISTELALALRHAGKKVGILDVDLCGPSIPRMLGAQGRAVHQCDRGWAPVFLDREQSISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSDVAWGELDYLVVDTPPGTSD 139          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUP1B_XENLA (Cytosolic Fe-S cluster assembly factor nubp1-B OS=Xenopus laevis GN=nubp1-B PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.073e-18
Identity = 54/142 (38.03%), Postives = 81/142 (57.04%), Query Frame = 2
Query:  275 EQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTE-YLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            E++ E +  + + + V S KGGVGKST + +LA+ LA   G  V + D D+ GPS+P M+  E   +  +    + +  E  L V  V F  S    A++ RGP  +G+I Q L   +WGE+DYL++D PPGT D  L++ Q
Sbjct:   48 EEIKEKMSLVKHKILVLSGKGGVGKSTFSAHLAHGLAQDEGKEVALLDVDICGPSIPRMMGLEGEQVHQSGSGWSPVYVEDNLAVMSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGEVDYLIVDTPPGTSDEHLSVVQ 189          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP1_RAT (Cytosolic Fe-S cluster assembly factor NUBP1 OS=Rattus norvegicus GN=Nubp1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.073e-18
Identity = 55/142 (38.73%), Postives = 84/142 (59.15%), Query Frame = 2
Query:  275 EQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTE-YLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            E++ E ++ + + + V S KGGVGKST + +LA+ LA  G  +V + D D+ GPS+P ++  E   +  +    + +  E  LGV  V F  S    A++ RGP  +G+I Q L   +WG++DYLVID PPGT D  L++ Q
Sbjct:   44 EEIREKMKTVRHRILVLSGKGGVGKSTFSAHLAHGLAEDGDTQVALLDIDICGPSIPKIMGLEGEQVHQSGSGWSPVYVEDNLGVMSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGDVDYLVIDTPPGTSDEHLSVVQ 185          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP2_RAT (Cytosolic Fe-S cluster assembly factor NUBP2 OS=Rattus norvegicus GN=Nubp2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18
Identity = 50/133 (37.59%), Postives = 74/133 (55.64%), Query Frame = 2
Query:  284 PEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL-EMNPEKRTIIPTEYLGVKLVSFGF---SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD 670
            P  L  + +I+ V S KGGVGKST++  LA  L   G +VGI D D+ GPS+P M+  + + + + +     +   +   + L+S GF   +     + RGP    +I Q ++   WGELDYLV+D PPGT D
Sbjct:    7 PGNLAGVRHIILVLSGKGGVGKSTISTELALALRHQGKKVGILDVDLCGPSIPHMLHAQGKAVHQCDSGWVPVFVDQEQSISLMSVGFLLENPDEAVVWRGPKKHALIKQFVSDVAWGELDYLVVDTPPGTSD 139          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP2_MONBE (Cytosolic Fe-S cluster assembly factor NUBP2 homolog OS=Monosiga brevicollis GN=33756 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18
Identity = 56/142 (39.44%), Postives = 78/142 (54.93%), Query Frame = 2
Query:  269 FAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF---SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL 685
            F E L + L  + +IV V S KGGVGKSTVA  +A  L   G +VG+ D D+ GPS+PTM    ++ +  + E    +      + ++S GF   S     I RGP  + +I Q L+   W ELD LV+D PPGT D  L++
Sbjct:    7 FYETLKQRLAGVKHIVLVLSGKGGVGKSTVASQMAIGLIHRGLKVGLLDIDLTGPSIPTMFGVADQQVHTSSEGWVPLYKYDQRLAIMSIGFLLDSRDEAVIWRGPKKNAMIQQFLSEVCWDELDCLVVDTPPGTSDEHLSI 148          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP1_XENTR (Cytosolic Fe-S cluster assembly factor nubp1 OS=Xenopus tropicalis GN=nubp1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18
Identity = 55/142 (38.73%), Postives = 82/142 (57.75%), Query Frame = 2
Query:  275 EQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR-VGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTE-YLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            E++ E L  + + + V S KGGVGKST + +LA+ LA   ++ V + D D+ GPS+P M+  E   +  +    + +  E  L V  V F  S    A++ RGP  +G+I Q L   +WGE+DYL+ID PPGT D  L++ Q
Sbjct:   48 EEIKEKLSSVKHKILVLSGKGGVGKSTFSAHLAHGLAQDESKEVALLDVDICGPSIPKMMGLEGEQVHQSGSGWSPVYVEDNLAVMSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGEVDYLIIDTPPGTSDEHLSVVQ 189          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUP1A_XENLA (Cytosolic Fe-S cluster assembly factor nubp1-A OS=Xenopus laevis GN=nubp1-A PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 62/181 (34.25%), Postives = 93/181 (51.38%), Query Frame = 2
Query:  161 CPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPARPIFA-EQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTE-YLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            CP  D  E   +      P     ++  S   A P  A E++ E +  + + + V S KGGVGKST + +LA+ LA   G  V + D D+ GPS+P M+  E   +  +    + +  E  L V  V F  S    A++ RGP  +G+I Q L   +WG++DYL++D PPGT D  L++ Q
Sbjct:   12 CPGTDSTEAGKSSACQGCP---NQSICASGAAAGPDPAIEEIKEKMSLVKHKILVLSGKGGVGKSTFSAHLAHGLAQDEGKEVALLDVDICGPSIPKMMGLEGEQVHQSGSGWSPVYVEDNLAVMSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGDVDYLIVDTPPGTSDEHLSVVQ 189          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP2_BOVIN (Cytosolic Fe-S cluster assembly factor NUBP2 OS=Bos taurus GN=NUBP2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 50/133 (37.59%), Postives = 71/133 (53.38%), Query Frame = 2
Query:  284 PEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRT-IIPTEYLGVKLVSFGF---SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD 670
            P  L  + +IV V S KGGVGKST++  LA  L   G +VGI D D+ GPS+P M+  + R +         +       + L+S GF         + RGP  + +I Q ++   WG+LDYL++D PPGT D
Sbjct:    7 PGNLAGVRHIVLVLSGKGGVGKSTISTELALALRHAGKKVGILDVDLCGPSIPRMLRAQGRAVHQGDSGWVPVFVDREQSISLMSVGFLLEQPDEAVVWRGPKKNALIKQFVSDVAWGQLDYLLVDTPPGTSD 139          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP1_BOVIN (Cytosolic Fe-S cluster assembly factor NUBP1 OS=Bos taurus GN=NUBP1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 52/142 (36.62%), Postives = 83/142 (58.45%), Query Frame = 2
Query:  275 EQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRT-IIPTEYLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            E++ E ++ + + + V S KGGVGKST + +LA+ LA     +V + D D+ GPS+P ++  E   +  +    + +   + LGV  V F  S    A++ RGP  +G+I Q L   +WGE+DYL++D PPGT D  L++ Q
Sbjct:   44 EEIKEKMKTVKHKILVLSGKGGVGKSTFSAHLAHGLAEDENTQVALLDIDICGPSIPKIMGLEGEQVHQSGSGWSPVFLEDNLGVMSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGEVDYLIVDTPPGTSDEHLSVVQ 185          
The following BLAST results are available for this feature:
BLAST of FC875375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
NUBP2_TRIAD6.291e-1939.26Cytosolic Fe-S cluster assembly factor NUBP2 homol... [more]
NUBP2_HUMAN6.291e-1938.35Cytosolic Fe-S cluster assembly factor NUBP2 OS=Ho... [more]
NUP1B_XENLA1.073e-1838.03Cytosolic Fe-S cluster assembly factor nubp1-B OS=... [more]
NUBP1_RAT1.073e-1838.73Cytosolic Fe-S cluster assembly factor NUBP1 OS=Ra... [more]
NUBP2_RAT1.401e-1837.59Cytosolic Fe-S cluster assembly factor NUBP2 OS=Ra... [more]
NUBP2_MONBE1.401e-1839.44Cytosolic Fe-S cluster assembly factor NUBP2 homol... [more]
NUBP1_XENTR1.401e-1838.73Cytosolic Fe-S cluster assembly factor nubp1 OS=Xe... [more]
NUP1A_XENLA1.830e-1834.25Cytosolic Fe-S cluster assembly factor nubp1-A OS=... [more]
NUBP2_BOVIN1.830e-1837.59Cytosolic Fe-S cluster assembly factor NUBP2 OS=Bo... [more]
NUBP1_BOVIN1.830e-1836.62Cytosolic Fe-S cluster assembly factor NUBP1 OS=Bo... [more]

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Properties
Property NameValue
Genbank descriptionC31403C04EF CTVClemen1 Citrus clementina cDNA clone C31403C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875375 ID=FC875375; Name=FC875375; organism=Citrus clementina; type=EST; length=693bp
ATCTACTGGAACAGCTGAGAATGATGTACTGAAAGCCTTGTCGCAAATTA
TTGATCCAGACTTTGGAACAGATATTGTCTCATGTGGTTTTGTGAAAGAT
ATGCAAATCAATGAAGCTCTGGGAGAGGTTTCCTTTCGGTTAGAGCTCAC
AACTCCAGCATGTCCAATCAAGGACATGTTTGAGCAAAGGGCAAATGAGG
TGGTGCTTGCAATTCCTTGGGTCAACAAAGTTAATGTGACTATGTCAGCA
CAACCAGCCAGACCTATTTTTGCAGAGCAACTTCCAGAAGGTTTACAGAA
AATTTCAAATATTGTGGCTGTTTCAAGTTGCAAGGGAGGTGTAGGGAAAT
CCACAGTAGCTGTAAATCTTGCTTACACTTTAGCAGGTATGGGTGCAAGG
GTTGGTATCTTTGATGCTGATGTCTATGGTCCGAGTTTACCAACAATGGT
CTCTCCAGAAAATCGACTGCTAGAGATGAATCCGGAGAAGAGAACAATTA
TTCCAACTGAATACCTGGGAGTCAAGTTGGTGTCTTTTGGATTTTCCGGG
CAAGGTCGTGCAATAATGCGAGGTCCAATGGTTTCTGGGGTCATCAACCA
ACTTCTGACAACAACTGAGTGGGGAGAGCTGGACTACCTTGTTATTGACA
TGCCTCCTGGAACTGGTGACATCCAACTTACTTTATGTCAGGT
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