FC875375

Overview
NameFC875375
Unique NameFC875375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NBP35_ASPOR (Cytosolic Fe-S cluster assembly factor nbp35 OS=Aspergillus oryzae GN=nbp35 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 58/147 (39.46%), Postives = 82/147 (55.78%), Query Frame = 2
Query:  254 PARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTL-AGMGARVGIFDADVYGPSLPTMVSPENRLLEM-NPEKRTIIPTEYLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL 685
            P  PI  E+L +   KI     V S KGGVGKST +  LA+   A   + VG+ D D+ GPS+P ++  E+  + + N     +  T+ LG   V F    +  A++ RGP  +G+I Q L   +WGELDYL+ID PPGT D  L++
Sbjct:   45 PDIPIIRERLSQVRHKI----LVLSGKGGVGKSTFSSLLAHAFSANPDSMVGLMDTDITGPSIPKLMGVESETIHVSNAGWSPVWVTDNLGAMSVQFMLPNRDDAVIWRGPKKNGLIKQFLKDVDWGELDYLIIDTPPGTSDEHLSV 187          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP2_MOUSE (Cytosolic Fe-S cluster assembly factor NUBP2 OS=Mus musculus GN=Nubp2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.078e-18
Identity = 49/133 (36.84%), Postives = 74/133 (55.64%), Query Frame = 2
Query:  284 PEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL-EMNPEKRTIIPTEYLGVKLVSFGF---SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD 670
            P  L  + +I+ V S KGGVGKST++  LA  L   G +VGI D D+ GPS+P M+  + + + + +     +   +   + L+S GF   +     + RGP    +I Q ++   WG+LDYLV+D PPGT D
Sbjct:   11 PGNLAGVRHIILVLSGKGGVGKSTISTELALALRHQGKKVGILDVDLCGPSIPHMLRAQGKAVHQCDNGWVPVFVDQEQSISLMSVGFLLENPDEAVVWRGPKKHALIKQFVSDVAWGQLDYLVVDTPPGTSD 143          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP2_AEDAE (Cytosolic Fe-S cluster assembly factor NUBP2 homolog OS=Aedes aegypti GN=AAEL008143 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.078e-18
Identity = 53/137 (38.69%), Postives = 78/137 (56.93%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEY-LGVKLVSFGFSGQGR---AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L+K+ +I+ V S KGGVGKSTV+  LA TL+    +VG+ D D+ GPS+P ++  E   +    E    + T     + ++S GF  + R    I RGP  + +I Q L    W +LDYL+ID PPGT D  +T+ +
Sbjct:    2 LEKVKHIILVLSGKGGVGKSTVSTQLALTLSESKFKVGLLDIDLCGPSVPYLLGLEGHDVHQCEEGWVPVYTNADKNLAVMSIGFLLKNRTDAVIWRGPKKTAMIKQFLEDVAWEDLDYLIIDTPPGTSDEHITVME 138          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP1_MOUSE (Cytosolic Fe-S cluster assembly factor NUBP1 OS=Mus musculus GN=Nubp1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.078e-18
Identity = 52/142 (36.62%), Postives = 84/142 (59.15%), Query Frame = 2
Query:  275 EQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRT-IIPTEYLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            E++ E ++ + + + V S KGGVGKST + +LA+ LA  G  +V + D D+ GPS+P ++  E   +  +    + +   + LGV  V F  S    A++ RGP  +G+I Q L   +WG++DYL++D PPGT D  L++ Q
Sbjct:   44 EEIREKMKTVRHKLLVLSGKGGVGKSTFSAHLAHGLAEDGDTQVALLDIDICGPSIPKIMGLEGEQVHQSGSGWSPVYVDDNLGVMSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGDVDYLIVDTPPGTSDEHLSVVQ 185          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: CFD1_CHAGB (Cytosolic Fe-S cluster assembly factor CFD1 OS=Chaetomium globosum GN=CFD1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.078e-18
Identity = 56/143 (39.16%), Postives = 83/143 (58.04%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTII------PTEYLG-VKLVSFGF--SGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L K+ +IV V S KGGVGKS+V   LA +L+  G  VG+ D D+ GPS+P M   E+  +   P     I      P+  +G ++++S GF    +G A++ RGP  + ++ Q L+   W ELDYL+ID PPGT D  ++L +
Sbjct:    3 LSKVKHIVLVLSGKGGVGKSSVTTQLALSLSQAGHSVGVLDVDLTGPSIPRMFGIEDAKVTQAPGGWLPITVHEADPSTGIGSLRVMSLGFLLPRRGDAVVWRGPKKTAMVRQFLSDVFWDELDYLLIDTPPGTSDEHISLAE 145          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP1_HUMAN (Cytosolic Fe-S cluster assembly factor NUBP1 OS=Homo sapiens GN=NUBP1 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 51/140 (36.43%), Postives = 82/140 (58.57%), Query Frame = 2
Query:  275 EQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTE-YLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL 685
            E++ E ++ + + + V S KGGVGKST + +LA+ LA     ++ + D D+ GPS+P ++  E   +  +    + +  E  LGV  V F  S    A++ RGP  +G+I Q L   +WGE+DYL++D PPGT D  L++
Sbjct:   44 EEIKEKMKTVKHKILVLSGKGGVGKSTFSAHLAHGLAEDENTQIALLDIDICGPSIPKIMGLEGEQVHQSGSGWSPVYVEDNLGVMSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGEVDYLIVDTPPGTSDEHLSV 183          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NBP35_ASPCL (Cytosolic Fe-S cluster assembly factor nbp35 OS=Aspergillus clavatus GN=nbp35 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 53/138 (38.41%), Postives = 79/138 (57.25%), Query Frame = 2
Query:  281 LPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADVYGPSLPTMVSPENRLLEM-NPEKRTIIPTEYLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL 685
            + E L +I + + V S KGGVGKST +  LA+  A    + VG+ D D+ GPS+P M+  E   + + N     +  T+ LG   + F    +  A++ RGP  +G+I Q L   +WGELDYL++D PPGT D  L++
Sbjct:   68 ITERLSQIRHKILVLSGKGGVGKSTFSSLLAHAFASNPESTVGLCDTDICGPSIPKMMGVEAETIHVSNAGWSPVWVTDNLGAMSIQFMLPNRDDAVIWRGPKKNGLIKQFLKDVDWGELDYLIVDTPPGTSDEHLSV 205          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP2_DICDI (Cytosolic Fe-S cluster assembly factor NUBP2 homolog OS=Dictyostelium discoideum GN=nubp2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.955e-18
Identity = 50/139 (35.97%), Postives = 82/139 (58.99%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIP-----TEYLGVKLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            + KI + + V S KGGVGKSTV+  LA  L+ +G +VG+ D D+ GPS+P M+  E++  +++   +  +P     ++ LGV  + F    +    I RGP  + +I Q +    WGE+D+L+ID PPGT D  +++ +
Sbjct:    1 MDKIKHKILVLSGKGGVGKSTVSSQLALYLSHIGYKVGLLDVDLCGPSIPKMMGLESK--DVHKSTKGWVPVYTDESQKLGVISIQFLLGDKDTPVIWRGPKKNSMIKQFIDDVNWGEIDFLIIDTPPGTSDEHISVTE 137          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NBP35_ASPFU (Cytosolic Fe-S cluster assembly factor nbp35 OS=Aspergillus fumigatus GN=nbp35 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.955e-18
Identity = 53/138 (38.41%), Postives = 80/138 (57.97%), Query Frame = 2
Query:  281 LPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADVYGPSLPTMVSPENRLLEM-NPEKRTIIPTEYLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL 685
            + E L +I + + V S KGGVGKST +  LA+  A    + VG+ D D+ GPS+P M+  E+  + + N     +  T+ L V  + F    +  AI+ RGP  +G+I Q L   +WG+LDYL++D PPGT D  L++
Sbjct:   67 ITERLSQIRHKILVLSGKGGVGKSTFSSLLAHAFASNPESTVGLCDTDICGPSIPKMMGVESETIHVSNAGWSPVWVTDNLSVMSIQFMLPNRDDAIIWRGPKKNGMIKQFLKDVDWGDLDYLIVDTPPGTSDEHLSV 204          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: CFD1_SCHPO (Probable cytosolic Fe-S cluster assembly factor C806.02c OS=Schizosaccharomyces pombe GN=SPAC806.02c PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.955e-18
Identity = 52/144 (36.11%), Postives = 78/144 (54.17%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGA-----RVGIFDADVYGPSLPTMVSPE---NRLLEMNPEKRTIIPTEYLGVKLVSFGF---SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            + K+ +++ V S KGGVGKS+V   LA +L          + GI D D+ GPS+P M   +   NR+ + +     +   E   + L+S GF   S     + RGP  + +I Q ++   WGELD+L+ID PPGTGD  LT+ +
Sbjct:    1 MDKVQHVILVLSGKGGVGKSSVTTQLALSLHDSKVYSRPLKTGILDIDLTGPSIPRMFGKDAERNRIHQSSAGWVPVYTDETKEIGLMSLGFLLTSKNDSVVWRGPKKAAMIRQFISDVSWGELDFLIIDTPPGTGDEHLTIVE 144          
The following BLAST results are available for this feature:
BLAST of FC875375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
NBP35_ASPOR1.830e-1839.46Cytosolic Fe-S cluster assembly factor nbp35 OS=As... [more]
NUBP2_MOUSE4.078e-1836.84Cytosolic Fe-S cluster assembly factor NUBP2 OS=Mu... [more]
NUBP2_AEDAE4.078e-1838.69Cytosolic Fe-S cluster assembly factor NUBP2 homol... [more]
NUBP1_MOUSE4.078e-1836.62Cytosolic Fe-S cluster assembly factor NUBP1 OS=Mu... [more]
CFD1_CHAGB4.078e-1839.16Cytosolic Fe-S cluster assembly factor CFD1 OS=Cha... [more]
NUBP1_HUMAN5.326e-1836.43Cytosolic Fe-S cluster assembly factor NUBP1 OS=Ho... [more]
NBP35_ASPCL5.326e-1838.41Cytosolic Fe-S cluster assembly factor nbp35 OS=As... [more]
NUBP2_DICDI6.955e-1835.97Cytosolic Fe-S cluster assembly factor NUBP2 homol... [more]
NBP35_ASPFU6.955e-1838.41Cytosolic Fe-S cluster assembly factor nbp35 OS=As... [more]
CFD1_SCHPO6.955e-1836.11Probable cytosolic Fe-S cluster assembly factor C8... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31403C04EF CTVClemen1 Citrus clementina cDNA clone C31403C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875375 ID=FC875375; Name=FC875375; organism=Citrus clementina; type=EST; length=693bp
ATCTACTGGAACAGCTGAGAATGATGTACTGAAAGCCTTGTCGCAAATTA
TTGATCCAGACTTTGGAACAGATATTGTCTCATGTGGTTTTGTGAAAGAT
ATGCAAATCAATGAAGCTCTGGGAGAGGTTTCCTTTCGGTTAGAGCTCAC
AACTCCAGCATGTCCAATCAAGGACATGTTTGAGCAAAGGGCAAATGAGG
TGGTGCTTGCAATTCCTTGGGTCAACAAAGTTAATGTGACTATGTCAGCA
CAACCAGCCAGACCTATTTTTGCAGAGCAACTTCCAGAAGGTTTACAGAA
AATTTCAAATATTGTGGCTGTTTCAAGTTGCAAGGGAGGTGTAGGGAAAT
CCACAGTAGCTGTAAATCTTGCTTACACTTTAGCAGGTATGGGTGCAAGG
GTTGGTATCTTTGATGCTGATGTCTATGGTCCGAGTTTACCAACAATGGT
CTCTCCAGAAAATCGACTGCTAGAGATGAATCCGGAGAAGAGAACAATTA
TTCCAACTGAATACCTGGGAGTCAAGTTGGTGTCTTTTGGATTTTCCGGG
CAAGGTCGTGCAATAATGCGAGGTCCAATGGTTTCTGGGGTCATCAACCA
ACTTCTGACAACAACTGAGTGGGGAGAGCTGGACTACCTTGTTATTGACA
TGCCTCCTGGAACTGGTGACATCCAACTTACTTTATGTCAGGT
back to top