FC875375

Overview
NameFC875375
Unique NameFC875375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: CFD1_ASPOR (Cytosolic Fe-S cluster assembly factor cfd1 OS=Aspergillus oryzae GN=cfd1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.955e-18
Identity = 56/145 (38.62%), Postives = 77/145 (53.10%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNP---EKRTIIP------TEYLGVKLVSFGFSGQGR---AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L  + NIV V S KGGVGKS+V + LA  L   G  VGI D D+ GPS+P +V  E+  +   P      T+ P       +   ++ +S GF  + R    I RGP  + +I Q L+   WGE DYL++D PPGT D  + L +
Sbjct:    3 LDGVKNIVLVLSGKGGVGKSSVTLQLALALTLQGKSVGILDIDLTGPSIPRLVGLEDAKITQAPGGWVPVTVHPASTNDGAQRGSLRCMSLGFLLRDRGDAVIWRGPKKTAMIRQFLSDVYWGETDYLLVDTPPGTSDEHIALAE 147          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP2_XENLA (Cytosolic Fe-S cluster assembly factor nubp2 OS=Xenopus laevis GN=nubp2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.084e-18
Identity = 49/138 (35.51%), Postives = 79/138 (57.25%), Query Frame = 2
Query:  275 EQLPEG--LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-LLEMNPEKRTIIPTEYLGVKLVSFGF---SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD 670
            EQ  +G  L  + +I+ V S KGGVGKST++  +A  L   G +VGI D D+ GPS+P M++ +++ + + +     +   +   + L+S GF         + RGP  + +I Q ++   WG+LD+L+ID PPGT D
Sbjct:    2 EQTQDGGNLSGVHHIILVLSGKGGVGKSTISTEIALALRHAGKKVGILDVDLCGPSIPRMLNAQSKDVHQCDSGWVPVYVDQEKSISLMSIGFLLEKPDDAVVWRGPKKNALIKQFVSDVAWGDLDFLIIDTPPGTSD 139          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NBP35_EMENI (Cytosolic Fe-S cluster assembly factor nbp35 OS=Emericella nidulans GN=nbp35 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.084e-18
Identity = 52/134 (38.81%), Postives = 78/134 (58.21%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLLEM-NPEKRTIIPTEYLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL 685
            L  + + + V S KGGVGKST +  LA+  A    + VGI D D+ GPS+P M+  E+  + + N     +  ++ LGV  V F    +  A++ RGP  +G+I Q L   +WGE+DYL++D PPGT D  L++
Sbjct:   72 LASVRHKILVLSGKGGVGKSTFSSLLAHGFASNPDSTVGIMDTDICGPSIPKMMGVESETIHISNAGWSPVWVSDNLGVMSVQFMLPNRDDAVIWRGPKKNGLIKQFLKDVDWGEMDYLIVDTPPGTSDEHLSV 205          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP1_DANRE (Cytosolic Fe-S cluster assembly factor nubp1 OS=Danio rerio GN=nubp1 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 49/143 (34.27%), Postives = 82/143 (57.34%), Query Frame = 2
Query:  275 EQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR-VGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF---SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            E++ + +  + + + V S KGGVGKST + +L++ LA   ++ V + D D+ GPS+P ++  E   +  +    + +  E   + ++S GF   S     I RGP  +G+I Q L   +WGE+DYL++D PPGT D  L++ Q
Sbjct:   48 EEIKQKMTSVKHKILVLSGKGGVGKSTFSAHLSHALASDSSKEVALLDVDICGPSIPKIMGLEGEQVHQSGSGWSPVYVED-NLAVMSIGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGEVDYLIVDTPPGTSDEHLSIVQ 189          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: CFD1_ASPFU (Cytosolic Fe-S cluster assembly factor cfd1 OS=Aspergillus fumigatus GN=cfd1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 55/148 (37.16%), Postives = 77/148 (52.03%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPE---KRTIIPTEYL---------GVKLVSFGFSGQGR---AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L  + NIV V S KGGVGKS+V + LA  L+  G  VGI D D+ GPS+P +V  E+  +   P      ++ P E            ++ +S GF  + R    I RGP  + +I Q L+   WG  DYL++D PPGT D  + L +
Sbjct:    3 LDGVKNIVLVLSGKGGVGKSSVTLQLALALSLQGKSVGILDIDLTGPSIPRIVGLEDAKITQTPRGWLPVSVHPPENTAQDGAPPRGALRCMSLGFLLRDRGDAVIWRGPKKTAMIRQFLSDVSWGPTDYLLVDTPPGTSDEHIALAE 150          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: CFD1_ASPCL (Cytosolic Fe-S cluster assembly factor cfd1 OS=Aspergillus clavatus GN=cfd1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 54/147 (36.73%), Postives = 75/147 (51.02%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYL-----------GVKLVSFGFSGQGR---AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L  + NIV V S KGGVGKS+V + LA  L+  G  VGI D D+ GPS+P +V  E+  +   P     +P                ++ +S GF  + R    I RGP  + +I Q L+   WG  DYL++D PPGT D  + L +
Sbjct:    3 LDGVKNIVLVLSGKGGVGKSSVTLQLALALSLQGKSVGILDIDLTGPSIPRLVGLEDAKITQAPGGWIPVPVHTAQNPSSTTQPRGSLRCMSLGFLLRDRGDAVIWRGPKKTAMIRQFLSDVYWGPTDYLLVDTPPGTSDEHIALAE 149          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: CFD1_CANAL (Cytosolic Fe-S cluster assembly factor CFD1 OS=Candida albicans GN=CFD1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.549e-17
Identity = 52/157 (33.12%), Postives = 82/157 (52.23%), Query Frame = 2
Query:  275 EQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEM-----------NPEKRTIIPTEYLGVKLVSFGF--SGQGRAIM-RGPMVSGVINQLLTTTEWGE----LDYLVIDMPPGTGDIQLTLCQ 691
            +++P+ ++ + +I+ + S KGGVGKS+V   +A TL   G  VG+ D D+ GPSLP M   EN+ +             N        ++   + L+S GF    +G +++ RGP  + +I Q L    WG     LDYL+ID PPGT D  + + +
Sbjct:    7 QEVPKSIEHVKHIILILSGKGGVGKSSVTTQVALTLVNKGFNVGVLDIDLTGPSLPRMFGVENKQVHQSTQGWVPVSVYNNNNNQGTDSKRGNLSLMSLGFLLGDRGNSVVWRGPKKTAMIKQFLKDVVWGSTETPLDYLLIDTPPGTSDEHIAIAE 163          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NBP35_COCIM (Cytosolic Fe-S cluster assembly factor NBP35 OS=Coccidioides immitis GN=NBP35 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 53/134 (39.55%), Postives = 74/134 (55.22%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLLEM-NPEKRTIIPTEYLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL 685
            L  I + + V S KGGVGKST    LA   A    + VG+ D D+ GPS+P M+  E   + + N     +  ++ L V  V F    +  A++ RGP  +G+I Q L   EWGELDYL++D PPGT D  L++
Sbjct:   71 LSSIRHKILVLSGKGGVGKSTFTSLLANAFASNPDSTVGVMDTDICGPSIPKMMDVETETIHVSNAGWNPVWVSDNLAVMSVQFMLPNRDDAVIWRGPKKNGLIKQFLKDVEWGELDYLIVDTPPGTSDEHLSV 204          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NBP35_ASPTN (Cytosolic Fe-S cluster assembly factor nbp35 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=nbp35 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 54/138 (39.13%), Postives = 78/138 (56.52%), Query Frame = 2
Query:  281 LPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLLEM-NPEKRTIIPTEYLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL 685
            + E L +I + + V S KGGVGKST +  LA+  A    + VGI D D+ GPS+  M+  E   + + N     +  T+ LG   + F    +  AI+ RGP  +G+I Q L   +WGELDYL++D PPGT D  L++
Sbjct:   68 ITERLSQIRHKILVLSGKGGVGKSTFSSLLAHAFAANPDSDVGIMDTDLCGPSIAKMMGVEAETIHVSNAGWSPVWVTDNLGAMSIQFMLPNRDDAIIWRGPKKNGLIKQFLKDVDWGELDYLIVDTPPGTSDEHLSV 205          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP2_CHICK (Cytosolic Fe-S cluster assembly factor NUBP2 OS=Gallus gallus GN=NUBP2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.643e-17
Identity = 47/127 (37.01%), Postives = 71/127 (55.91%), Query Frame = 2
Query:  302 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVS-PENRLLEMNPEKRTIIPTEYLGVKLVSFGF---SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD 670
            + +I+ V S KGGVGKST++  LA +L   G +VGI D D+ GPS+P M    +N + + +     +   +   + L+S GF         + RGP  + +I Q +    WGELD+L++D PPGT D
Sbjct:   14 VRHILLVLSGKGGVGKSTISTELALSLRHSGKKVGILDVDLCGPSIPRMFKVQDNDVHQCDAGWVPVFVDQEKSISLMSIGFLLEKPDDAVVWRGPKKNALIKQFVADVAWGELDFLIVDTPPGTSD 140          
The following BLAST results are available for this feature:
BLAST of FC875375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
CFD1_ASPOR6.955e-1838.62Cytosolic Fe-S cluster assembly factor cfd1 OS=Asp... [more]
NUBP2_XENLA9.084e-1835.51Cytosolic Fe-S cluster assembly factor nubp2 OS=Xe... [more]
NBP35_EMENI9.084e-1838.81Cytosolic Fe-S cluster assembly factor nbp35 OS=Em... [more]
NUBP1_DANRE1.186e-1734.27Cytosolic Fe-S cluster assembly factor nubp1 OS=Da... [more]
CFD1_ASPFU1.186e-1737.16Cytosolic Fe-S cluster assembly factor cfd1 OS=Asp... [more]
CFD1_ASPCL1.186e-1736.73Cytosolic Fe-S cluster assembly factor cfd1 OS=Asp... [more]
CFD1_CANAL1.549e-1733.12Cytosolic Fe-S cluster assembly factor CFD1 OS=Can... [more]
NBP35_COCIM2.024e-1739.55Cytosolic Fe-S cluster assembly factor NBP35 OS=Co... [more]
NBP35_ASPTN2.024e-1739.13Cytosolic Fe-S cluster assembly factor nbp35 OS=As... [more]
NUBP2_CHICK2.643e-1737.01Cytosolic Fe-S cluster assembly factor NUBP2 OS=Ga... [more]

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Properties
Property NameValue
Genbank descriptionC31403C04EF CTVClemen1 Citrus clementina cDNA clone C31403C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875375 ID=FC875375; Name=FC875375; organism=Citrus clementina; type=EST; length=693bp
ATCTACTGGAACAGCTGAGAATGATGTACTGAAAGCCTTGTCGCAAATTA
TTGATCCAGACTTTGGAACAGATATTGTCTCATGTGGTTTTGTGAAAGAT
ATGCAAATCAATGAAGCTCTGGGAGAGGTTTCCTTTCGGTTAGAGCTCAC
AACTCCAGCATGTCCAATCAAGGACATGTTTGAGCAAAGGGCAAATGAGG
TGGTGCTTGCAATTCCTTGGGTCAACAAAGTTAATGTGACTATGTCAGCA
CAACCAGCCAGACCTATTTTTGCAGAGCAACTTCCAGAAGGTTTACAGAA
AATTTCAAATATTGTGGCTGTTTCAAGTTGCAAGGGAGGTGTAGGGAAAT
CCACAGTAGCTGTAAATCTTGCTTACACTTTAGCAGGTATGGGTGCAAGG
GTTGGTATCTTTGATGCTGATGTCTATGGTCCGAGTTTACCAACAATGGT
CTCTCCAGAAAATCGACTGCTAGAGATGAATCCGGAGAAGAGAACAATTA
TTCCAACTGAATACCTGGGAGTCAAGTTGGTGTCTTTTGGATTTTCCGGG
CAAGGTCGTGCAATAATGCGAGGTCCAATGGTTTCTGGGGTCATCAACCA
ACTTCTGACAACAACTGAGTGGGGAGAGCTGGACTACCTTGTTATTGACA
TGCCTCCTGGAACTGGTGACATCCAACTTACTTTATGTCAGGT
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