FC875375

Overview
NameFC875375
Unique NameFC875375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: CFD1_GIBZE (Cytosolic Fe-S cluster assembly factor CFD1 OS=Gibberella zeae GN=CFD1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.643e-17
Identity = 57/144 (39.58%), Postives = 80/144 (55.56%), Query Frame = 2
Query:  290 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTII------PTEYLG-VKLVSFGF--SGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            GL K+ +I+ V S KGGVGKS+V   LA +L   G  VGI D D+ GPS+P M+S E   +   P     +       ++ LG +  +S GF    +G A++ RGP  + +I Q L    W E DYL+ID PPGT D  ++L +
Sbjct:    2 GLTKVKHIILVLSGKGGVGKSSVTTQLALSLTSAGHSVGILDVDLTGPSIPRMLSIEASKVTQVPGGWAPVLVHEADESKGLGSLHAMSLGFLLPKRGDAVVWRGPKKTAMIRQFLKDVLWDETDYLLIDTPPGTSDEHISLAE 145          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP2_XENTR (Cytosolic Fe-S cluster assembly factor nubp2 OS=Xenopus tropicalis GN=nubp2 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.508e-17
Identity = 45/130 (34.62%), Postives = 74/130 (56.92%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-LLEMNPEKRTIIPTEYLGVKLVSFGF---SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD 670
            L  + +I+ V S KGGVGKST++  +A  L   G +VGI D D+ GPS+P M++ +++ + + +     +   +   + L+S GF         + RGP  + +I Q  +   WG+LD+L++D PPGT D
Sbjct:   10 LSGVQHIILVLSGKGGVGKSTISTEIALALRHAGKKVGILDVDLCGPSIPRMLNAQSKDVHQCDSGWVPVYVDQEKSISLMSIGFLLEHPDDAVVWRGPKKNALIKQFASDVAWGDLDFLIVDTPPGTSD 139          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NBP35_CRYNE (Cytosolic Fe-S cluster assembly factor NBP35 OS=Cryptococcus neoformans GN=NBP35 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.508e-17
Identity = 56/151 (37.09%), Postives = 81/151 (53.64%), Query Frame = 2
Query:  254 PARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYL-GVKLVSFGF---SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            P  P+  E++    +KI     V S KGGVGKST    L++ LA     + GI D D+ GPS+P ++  E+  +  +    +  P   L  + ++S GF   S     I RGP  +G+I Q L   EWG+LDY+V+D PPGT D  L++ Q
Sbjct:   67 PDLPLIRERMSSVRRKI----LVLSGKGGVGKSTFTAGLSWALAADEECQAGIMDIDICGPSIPLLMGLESSTIHTSASGWS--PAYALDNLAVMSIGFLLPSSSDAVIWRGPKKNGLIKQFLKDVEWGDLDYMVVDTPPGTSDEHLSIVQ 211          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: CFD1_SCHJY (Probable cytosolic Fe-S cluster assembly factor SJAG_02895 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=SJAG_02895 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.508e-17
Identity = 48/148 (32.43%), Postives = 82/148 (55.41%), Query Frame = 2
Query:  281 LPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLA-----GMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIP-----TEYLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            + + L+ + +I+ V S KGGVGKS+V   LA +L          R+G+ D D+ GPS+P M   +     ++      +P     T+ +G+  ++F  S +  +++ RGP  + +I Q ++   WG++DYL+ID PPGT D  LT+ +
Sbjct:    1 MADSLENVKHIILVLSGKGGVGKSSVTTQLALSLHETPFYSRKLRIGVLDIDLTGPSIPRMFGMDAETHRIHQSSSGWVPVYTDETKEIGLMSLAFLLSSKNDSVVWRGPKKAAMIRQFVSDVNWGDIDYLLIDTPPGTSDEHLTIVE 148          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: CFD1_NEUCR (Cytosolic Fe-S cluster assembly factor CFD1 OS=Neurospora crassa GN=cfd-1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.508e-17
Identity = 55/143 (38.46%), Postives = 82/143 (57.34%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTII------PTEYLG-VKLVSFGF--SGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L K+ +IV V S KGGVGKS+V   LA +L+  G  VG+ D D+ GPS+P M   E+  +   P     I      P+  +G ++++S GF    +G A++ RGP  + ++ Q L+   W E DYL+ID PPGT D  ++L +
Sbjct:    3 LAKVKHIVLVLSGKGGVGKSSVTTQLALSLSLAGHSVGVLDVDLTGPSIPRMFGIEDAKVTQAPGGWLPITVHEADPSAGVGSLRVMSLGFLLPKRGDAVVWRGPKKTAMVRQFLSDVFWDETDYLLIDTPPGTSDEHISLAE 145          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NUBP1_NEMVE (Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Nematostella vectensis GN=v1g236650 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17
Identity = 56/156 (35.90%), Postives = 86/156 (55.13%), Query Frame = 2
Query:  236 VTMSAQPARPI-FAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR-VGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTE-YLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            +  S++PA P     ++ E L  + + + V S KGGVGKST   +LA+ LA    R V + D D+ GPS+PT+   +   +  +    + +  E  LGV  V F  +    A++ RGP  +G+I Q L   +WG+ D+LV+D PPGT D  L++ Q
Sbjct:   34 ICASSKPAPPDPDLGKIKERLSSVKHKILVLSGKGGVGKSTFTAHLAHGLAADEDRQVAVLDIDICGPSIPTVFGLQGEQVHQSGSGWSPVYVEDNLGVMSVGFLLAKPTDAVIWRGPKKNGLIKQFLRDVDWGDADFLVVDTPPGTSDEHLSIIQ 189          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NBP35_PHANO (Cytosolic Fe-S cluster assembly factor NBP35 OS=Phaeosphaeria nodorum GN=NBP35 PE=3 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17
Identity = 49/134 (36.57%), Postives = 76/134 (56.72%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTL-AGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEK-RTIIPTEYLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL 685
            L  + + + V S KGGVGKST +  L++   A   + VG+ D D+ GPS+P M+  E   +    +    +  +E LGV  V F    +  A++ RGP  +G+I + L   +WGELD+L++D PPGT D  L++
Sbjct:   72 LSSVKHKILVLSGKGGVGKSTFSTMLSHGFSANPDSTVGLMDTDICGPSIPKMMGVEEETIHTTADGWEPVWVSENLGVMSVQFMLPNRDDAVIWRGPKKNGLIKKFLMDVKWGELDFLIVDTPPGTSDEHLSV 205          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NBP35_CHAGB (Cytosolic Fe-S cluster assembly factor NBP35 OS=Chaetomium globosum GN=NBP35 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17
Identity = 51/134 (38.06%), Postives = 76/134 (56.72%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTII-PTEYLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL 685
            L  + + + V S KGGVGKST+   LA  LA    A VG+ D D+ GPS+P M+  E   + ++    + +   + L V  + F    +  AI+ RGP  +G+I Q L   EWG+LD+L++D PPGT D  L++
Sbjct:   74 LAGVKHKILVLSGKGGVGKSTLTAQLAQALATNPEATVGVMDTDICGPSIPKMLGVEAETIHVSGSGWSPVWAADNLAVMSIQFMLPNRDDAIIWRGPKKNGLIKQFLKDVEWGDLDFLLVDTPPGTSDEHLSV 207          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: CFD1_USTMA (Cytosolic Fe-S cluster assembly factor CFD1 OS=Ustilago maydis GN=CFD1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.690e-17
Identity = 52/145 (35.86%), Postives = 80/145 (55.17%), Query Frame = 2
Query:  293 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMG--------ARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTE---YLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            L  +S+I+ V S KGGVGKS+V+  LA +L+           ARVGI D D+ GPS+P M+      ++ + +    + T+   +L V  V F    +  +++ RGP  + +I Q L    WG LDYL+ID PPGT D  +++ +
Sbjct:   25 LSSVSHIILVLSGKGGVGKSSVSAQLALSLSSSASPSDRSRMARVGILDIDLTGPSIPRMLGLGGASVKQSTDGWVPVYTDASQHLAVMSVGFLLRSKNDSVVWRGPKKNAMIKQFLGDVRWGTLDYLIIDTPPGTSDEHISILE 169          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: NBP35_DEBHA (Cytosolic Fe-S cluster assembly factor NBP35 OS=Debaryomyces hansenii GN=NBP35 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.004e-16
Identity = 59/159 (37.11%), Postives = 82/159 (51.57%), Query Frame = 2
Query:  254 PARPIFAEQLPEG-----------LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENRLL-EMNPEKRTIIPTEYLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGE-LDYLVIDMPPGTGDIQLTL 685
            P + I + QLP+G           L +I + + V S KGGVGKST    L++ LA      VG  D D+ GPSLP M+  E   + + N     +   + LG+  +SF       A++ RG   +G+I Q L    WGE LDYLV+D PPGT D  L++
Sbjct:   38 PNQSICSSQLPQGPDPDLPLINKRLSQIDHKILVLSGKGGVGKSTFTSMLSWALAADEDIEVGAMDLDICGPSLPRMLGAEGESIHQSNSGWSPVYVADNLGLMSISFMLPDADSAVIWRGAKKNGLIKQFLKDVNWGEHLDYLVVDTPPGTSDEHLSV 196          
The following BLAST results are available for this feature:
BLAST of FC875375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
CFD1_GIBZE2.643e-1739.58Cytosolic Fe-S cluster assembly factor CFD1 OS=Gib... [more]
NUBP2_XENTR4.508e-1734.62Cytosolic Fe-S cluster assembly factor nubp2 OS=Xe... [more]
NBP35_CRYNE4.508e-1737.09Cytosolic Fe-S cluster assembly factor NBP35 OS=Cr... [more]
CFD1_SCHJY4.508e-1732.43Probable cytosolic Fe-S cluster assembly factor SJ... [more]
CFD1_NEUCR4.508e-1738.46Cytosolic Fe-S cluster assembly factor CFD1 OS=Neu... [more]
NUBP1_NEMVE5.888e-1735.90Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]
NBP35_PHANO5.888e-1736.57Cytosolic Fe-S cluster assembly factor NBP35 OS=Ph... [more]
NBP35_CHAGB5.888e-1738.06Cytosolic Fe-S cluster assembly factor NBP35 OS=Ch... [more]
CFD1_USTMA7.690e-1735.86Cytosolic Fe-S cluster assembly factor CFD1 OS=Ust... [more]
NBP35_DEBHA1.004e-1637.11Cytosolic Fe-S cluster assembly factor NBP35 OS=De... [more]

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Properties
Property NameValue
Genbank descriptionC31403C04EF CTVClemen1 Citrus clementina cDNA clone C31403C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875375 ID=FC875375; Name=FC875375; organism=Citrus clementina; type=EST; length=693bp
ATCTACTGGAACAGCTGAGAATGATGTACTGAAAGCCTTGTCGCAAATTA
TTGATCCAGACTTTGGAACAGATATTGTCTCATGTGGTTTTGTGAAAGAT
ATGCAAATCAATGAAGCTCTGGGAGAGGTTTCCTTTCGGTTAGAGCTCAC
AACTCCAGCATGTCCAATCAAGGACATGTTTGAGCAAAGGGCAAATGAGG
TGGTGCTTGCAATTCCTTGGGTCAACAAAGTTAATGTGACTATGTCAGCA
CAACCAGCCAGACCTATTTTTGCAGAGCAACTTCCAGAAGGTTTACAGAA
AATTTCAAATATTGTGGCTGTTTCAAGTTGCAAGGGAGGTGTAGGGAAAT
CCACAGTAGCTGTAAATCTTGCTTACACTTTAGCAGGTATGGGTGCAAGG
GTTGGTATCTTTGATGCTGATGTCTATGGTCCGAGTTTACCAACAATGGT
CTCTCCAGAAAATCGACTGCTAGAGATGAATCCGGAGAAGAGAACAATTA
TTCCAACTGAATACCTGGGAGTCAAGTTGGTGTCTTTTGGATTTTCCGGG
CAAGGTCGTGCAATAATGCGAGGTCCAATGGTTTCTGGGGTCATCAACCA
ACTTCTGACAACAACTGAGTGGGGAGAGCTGGACTACCTTGTTATTGACA
TGCCTCCTGGAACTGGTGACATCCAACTTACTTTATGTCAGGT
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