FC875378

Overview
NameFC875378
Unique NameFC875378
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15382 contig Ccv1_Contig15382:10..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875378 vs. ExPASy Swiss-Prot
Match: ANX10_HUMAN (Annexin A10 OS=Homo sapiens GN=ANXA10 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 6.314e-17
Identity = 56/199 (28.14%), Postives = 102/199 (51.26%), Query Frame = 2
Query:   95 DAEQLHKAFQGWGTNEALIISVLAHRNAAQRKLIREIYNETYGEDLLKALDKELSSDFERSVLLWTLTPAERDAYLANEATKRLTSSNWVLMEIACTRSSRDLLAAKQAYHARYKKSLEEDVAYHTSGDFRKLLVPLVSTFRYDGGDVNMMLARTEAKIIRDKISDKDYAHEELIR-ILTXRSKAQINATLNHYNDAFG 688
            DA+ L  A QG+  ++ ++I++L  R  AQR +I E Y   YG DL+  + ++LS  F+  +      P   DA+    A K + +    L+EI  +R++ ++   ++AY  +Y  +L+ED+   TSG FR  L+ LV   R + G  +  +A  +A ++ +    K   H+ +++ IL  +S  Q+      + +  G
Sbjct:   22 DAQMLGGALQGFDCDKDMLINILTQRCNAQRMMIAEAYQSMYGRDLIGDMREQLSDHFKDVMAGLMYPPPLYDAHELWHAMKGVGTDENCLIEILASRTNGEIFQMREAYCLQYSNNLQEDIYSETSGHFRDTLMNLVQGTR-EEGYTDPAMAAQDAMVLWEACQQKTGEHKTMLQMILCNKSYQQLRLVFQEFQNISG 219          
BLAST of FC875378 vs. ExPASy Swiss-Prot
Match: ANX10_DROME (Annexin-B10 OS=Drosophila melanogaster GN=AnnX PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.837e-16
Identity = 61/199 (30.65%), Postives = 100/199 (50.25%), Query Frame = 2
Query:   86 AAEDAEQLHKAFQGWGTNEALIISVLAHRNAAQRKLIREIYNETYGEDLLKALDKELSSDFERSVLLWTLTPAERDAYLANEATKRLTSSNWVLMEIACTRSSRDLLAAKQAYHARYKKSLEEDVAYHTSGDFRKLLVPLVSTFRYDGGD--VNMMLARTEAKIIRDKISDKDYAHEELI-RILTXRSKAQINATLNHY 673
            A++DA+ L  A +G+GT+E  II VL  R+  QR+ I+ +Y   +  DL+  L  EL   FE  ++   + P E      + A   + +    L+EI CT+++ ++      Y  RY++ L E +   TSG FR+LL  +V+  R DG D  V++  A+ +A  +      K    EE+  RI++  S  Q+      Y
Sbjct:   17 ASQDAQVLRAAMKGFGTDEQEIIDVLVGRSNQQRQTIKAVYEAEFERDLVDDLKDELGGKFEDVIVGLMMPPVEYLCKQLHAAMAGIGTEEATLVEILCTKTNEEMAQIVAVYEERYQRPLAEQMCSETSGFFRRLLTLIVTGVR-DGLDTPVDVGQAKEQAAQLYSAGEAKLGTDEEVFNRIMSHASFPQLRLVFEEY 214          
BLAST of FC875378 vs. ExPASy Swiss-Prot
Match: ANX2B_XENLA (Annexin A2-B OS=Xenopus laevis GN=anxa2-B PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 61/213 (28.64%), Postives = 104/213 (48.83%), Query Frame = 2
Query:   41 KSTMATLKVPTQTPSAAEDAEQLHKAFQGWGTNEALIISVLAHRNAAQRKLIREIYNETYGEDLLKALDKELSSDFERSVLLWTLTPAERDAYLANEATKRLTSSNWVLMEIACTRSSRDLLAAKQAYHARYKKSLEEDVAYHTSGDFRKLLVPLVSTFRYDGGDV--NMMLARTEAKIIRDKISDKDYAHEELIRILTXRSKAQINATLNHY 673
            +S + ++K  T    A +DA  +  A +  G +E  II++L +R+  QR+ I   ++    +DL  AL   LS + E  +L    T  + DA     + K L +    L+EI C+R++++LL  + AY   +K  LE+D+   TSGDFRKL+V L    R + G++     + +   ++    +  K     + I I+T RS   +      Y
Sbjct:   22 QSKLGSVKAATHF-DAEKDAAAIETAIKTKGVDELTIINILTNRSNEQRQDIAFAFHRRTKKDLPSALKGALSGNLETVMLGLIKTRPQYDASELKASMKGLGTDEDTLIEIICSRTNKELLDIQNAYRELFKTELEKDIMSDTSGDFRKLMVALAKGRRQEDGNMVDYEKIDQDARELYEAGVKRKGTDVTKWITIMTERSHPHLQKVFERY 233          
BLAST of FC875378 vs. ExPASy Swiss-Prot
Match: ANXA1_RODSP (Annexin A1 OS=Rodentia sp. GN=ANXA1 PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 6.534e-14
Identity = 52/169 (30.77%), Postives = 81/169 (47.93%), Query Frame = 2
Query:   68 PTQTPSAAEDAEQLHKAFQGWGTNEALIISVLAHRNAAQRKLIREIYNETYGEDLLKALDKELSSDFERSVLLWTLTPAERDAYLANEATKRLTSSNWVLMEIACTRSSRDLLAAKQAYHARYKKSLEEDVAYHTSGDFRKLLVPLVSTFRYDGGDVNMMLARTEAKII 574
            P+  PS+  D   LHK     G +EA I+ +L  R  AQR  ++ +Y +  GE L + L K L+   +  +L    TPA+ D      A K + +    L+EI  TRS++ +      Y    KK + +     TSG+FR  L+ L    R +   VN  +A T+A+ +
Sbjct:   40 PSFDPSS--DVAALHKGIMVNGVDEATILDLLTKRYNAQRHHLKAVYIQETGEPLDETLKKALTGHIQELLLAMIKTPAQFDGNELRAAMKAVGTDEETLIEILWTRSNQQIREITSVYREELKKDIAKYQTSDTSGEFRDALLALAKGNRCEDMSVNQDIADTDARAL 206          
BLAST of FC875378 vs. ExPASy Swiss-Prot
Match: ANXA9_MOUSE (Annexin A9 OS=Mus musculus GN=Anxa9 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.483e-13
Identity = 62/228 (27.19%), Postives = 103/228 (45.18%), Query Frame = 2
Query:    8 SSFSILQKR*NKSTMATLKVPTQTPSAAEDAEQLHKAFQGWGTNEALIISVLAHRNAAQRKLIREIYNETYGEDLLKALDKELSSDFERSVLLWTLTPAERDAYLANEATKRLTSSNWVLMEIACTRSSRDLLAAKQAYHARYKKSLEEDVAYHTSGDFRKLLVPLVSTFRYD-GGDVNMMLARTEAKIIRDKISDKDYAHEELIRILTXRSKAQINATLNHYNDAFG 688
            SS  +  K     T+ TL+      S  +D ++L KA  G G +   I+ VL +R+  QR+LI   + E   +DLLK+L   LS + E+ V+      A+ DA     A K   S+  V +EI  TR++  L A    Y   ++   EED+   T+G  + LL+ L    R    G ++  L   + + ++   + +     + + +LT RS   +    + Y    G
Sbjct:   18 SSLGLADKTAAWGTLGTLRTFLSF-SVDKDVQRLLKAIAGQGVDYDTIVDVLTNRSREQRQLISRAFQERTKQDLLKSLQAALSGNLEKIVVALLQPAAQFDAQELRTALKTSGSAEDVALEILATRAAPGLQACLAVYKHDFQVEAEEDIRTETNGILQDLLLALSKGDRESYSGIIDYNLEEQDVRALQQ--AGESSTAGQWVLLLTQRSPEHLIRVFDQYRRCTG 242          
The following BLAST results are available for this feature:
BLAST of FC875378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
ANX10_HUMAN6.314e-1728.14Annexin A10 OS=Homo sapiens GN=ANXA10 PE=1 SV=3[more]
ANX10_DROME1.837e-1630.65Annexin-B10 OS=Drosophila melanogaster GN=AnnX PE=... [more]
ANX2B_XENLA6.981e-1628.64Annexin A2-B OS=Xenopus laevis GN=anxa2-B PE=2 SV=... [more]
ANXA1_RODSP6.534e-1430.77Annexin A1 OS=Rodentia sp. GN=ANXA1 PE=2 SV=3[more]
ANXA9_MOUSE2.483e-1327.19Annexin A9 OS=Mus musculus GN=Anxa9 PE=2 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31403C07EF CTVClemen1 Citrus clementina cDNA clone C31403C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875378 ID=FC875378; Name=FC875378; organism=Citrus clementina; type=EST; length=723bp
GACTGCCTCGTCATTTTCTATTTTACAAAAACGCTGAAACAAATCGACAA
TGGCGACCCTTAAAGTGCCAACCCAGACCCCTTCTGCTGCTGAGGATGCT
GAGCAACTCCACAAAGCCTTCCAAGGATGGGGCACGAATGAGGCCCTCAT
TATATCTGTCTTGGCTCACAGAAATGCAGCTCAGCGCAAGTTGATTCGAG
AAATCTACAACGAAACTTATGGGGAAGACCTTCTTAAAGCACTGGACAAA
GAACTTTCAAGTGACTTTGAGAGATCTGTACTGCTATGGACATTGACTCC
TGCTGAGCGTGATGCTTATTTGGCAAATGAAGCGACAAAGAGATTGACTT
CAAGCAACTGGGTTCTCATGGAAATTGCCTGTACTAGATCTTCAAGAGAC
CTACTTGCTGCAAAGCAGGCCTACCATGCTCGTTACAAGAAATCCCTAGA
GGAAGATGTTGCATATCACACATCTGGGGACTTCCGCAAGCTTTTGGTTC
CTCTTGTGAGCACATTTCGATATGATGGAGGAGATGTGAACATGATGTTG
GCAAGAACTGAGGCTAAGATTATCCGTGACAAGATTTCAGACAAGGATTA
TGCTCATGAGGAGCTTATCAGGATTCTGACTANCAGGAGCAAGGCACAGA
TAAATGCGACCCTCAATCACTACAATGATGCTTTTGGAATGCCATNCACA
GGATTTGAGGCTGATCCCATGAT
back to top