FC875380

Overview
NameFC875380
Unique NameFC875380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875380 vs. ExPASy Swiss-Prot
Match: AVPX_ARATH (Pyrophosphate-energized membrane proton pump 3 OS=Arabidopsis thaliana GN=AVPL2 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.788e-52
Identity = 112/238 (47.06%), Postives = 151/238 (63.45%), Query Frame = 1
Query:    1 NTTAAIGKGFAIGSAALVSLALFGAFV------SRAAISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTISGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFF------------GVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAP 660
            NTT A  KGFAIGSAAL S  LF A++      +  +   VD+  P+VFIG ++GAML + FSA    +VG  A ++V EVRRQF    G+M+   KPDY  CV I   ++++EMI PGAL +++P+ VG  F            G + ++ +L  + V G+ +A+  +  GGAWDNAKKYIE GA      LG KGSD HKAAV GDT+GDP KDT+GPS+++LIK++A  +LV AP
Sbjct:  568 NTTKATTKGFAIGSAALASFLLFSAYMDEVSAFANVSFKEVDIAIPEVFIGGLLGAMLIFLFSAWACAAVGRTAQEVVNEVRRQFIERPGIMDYKEKPDYGRCVAIVASSALREMIKPGALAIISPIAVGFVFRILGYYTGQPLLGAKVVAAMLMFATVCGILMALFLNTAGGAWDNAKKYIETGA------LGGKGSDSHKAAVTGDTVGDPFKDTAGPSIHVLIKMLATITLVMAP 799          
BLAST of FC875380 vs. ExPASy Swiss-Prot
Match: HPPA_MYXXA (Pyrophosphate-energized proton pump (Fragment) OS=Myxococcus xanthus GN=hppA PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.373e-51
Identity = 115/229 (50.22%), Postives = 151/229 (65.94%), Query Frame = 1
Query:    1 NTTAAIGKGFAIGSAALVSLALFGAF---VSRAAIS------TVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTISGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAG-ASEHARTLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFA 657
            NTTAAIGKGFAIGSA L  +ALF AF   V+   I+      ++ +  P V +GL++G++LP+   A TM +VG AA  +VEE+ RQF  I GLME  A PD    V I+T ++++EM+ PG + +  P +VG   G   L+G+LAGSLV G  +A+  +N GGAWDNAKK+IE G    HA     KGS  HKAAV+GD +GDP KDTSGP + ILIK+M+V SL+ A
Sbjct:   46 NTTAAIGKGFAIGSATLTVIALFSAFNLEVNHTRIAAGLPEMSLQLTNPNVIVGLLLGSILPFLVGASTMLAVGRAAGAIVEEIGRQFREIPGLMELKADPDPKKIVDIATKSALQEMVFPGIIAVAAPPLVGYLLGPGALAGLLAGSLVVGATMALYMANAGGAWDNAKKFIEKGKLPGHA-----KGSAVHKAAVVGDMVGDPFKDTSGPGVAILIKVMSVVSLLVA 269          
BLAST of FC875380 vs. ExPASy Swiss-Prot
Match: HPPA_RHORT (Pyrophosphate-energized proton pump OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=hppA PE=1 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 4.123e-49
Identity = 112/240 (46.67%), Postives = 151/240 (62.92%), Query Frame = 1
Query:    1 NTTAAIGKGFAIGSAALVSLALFGAFV-----------SRAAISTVDV----LTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTISGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIV-GIFFGV-------ETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLV 651
            NTT A+ KG+AIGSA L +L LF A+            +  A + VDV     +P V +GL +G +LPY F +M M +VG AA  +VEEVRRQF  I G+MEGTAKP+Y  CV + T A+IKEMI P  L +L P+++  +  G+         L  +L G +V+G+ +AIS +  GGAWDNAKKYIE G        G KGS+ HKAAV GDT+GDP KDT+GP++N +IK+  + +L+
Sbjct:  462 NTTKAVTKGYAIGSAGLGALVLFAAYTEDLAFFKANVDAYPAFAGVDVNFSLSSPYVVVGLFIGGLLPYLFGSMGMTAVGRAAGSVVEEVRRQFREIPGIMEGTAKPEYGRCVDMLTKAAIKEMIIPSLLPVLAPIVLYFVILGIADKSAAFSALGAMLLGVIVTGLFVAISMTAGGGAWDNAKKYIEDG------HYGGKGSEAHKAAVTGDTVGDPYKDTAGPAVNPMIKITNIVALL 695          
BLAST of FC875380 vs. ExPASy Swiss-Prot
Match: HPPA1_RHOPA (Pyrophosphate-energized proton pump OS=Rhodopseudomonas palustris GN=hppA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.123e-46
Identity = 111/245 (45.31%), Postives = 150/245 (61.22%), Query Frame = 1
Query:    1 NTTAAIGKGFAIGSAALVSLALFGA-------FVSRAAISTVDVL------TPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTISGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSG---------------VLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLV 651
            NTT A+ KG+AIGSA L +L LF A       F+++ +   V V        P V +GL+ G +LPY F AM M +VG AA  +VEEVRRQF    G+M+GT KPDY   V + T A+IKEMI P  L +L+P+ V  +F +  ++G               +L G +V+G+ +AIS ++ GGAWDNAKKYIE G        G KGSD HKAAV GDT+GDP KDT+GP++N +IK+  + +L+
Sbjct:  463 NTTKAVTKGYAIGSAGLGALVLFAAYNEDLKFFIAQKSPYFVGVAPDFSLNNPYVVVGLLFGGLLPYLFGAMGMTAVGRAAGAIVEEVRRQFREKPGIMKGTDKPDYGKAVDLLTKAAIKEMIIPSLLPVLSPIFV--YFAIYAIAGGGAAGKSAAFSAVGAMLLGVIVTGLFVAISMTSGGGAWDNAKKYIEDGHH------GGKGSDAHKAAVTGDTVGDPYKDTAGPAVNPMIKITNIVALL 699          
BLAST of FC875380 vs. ExPASy Swiss-Prot
Match: HPPA_BRAJA (Pyrophosphate-energized proton pump OS=Bradyrhizobium japonicum GN=hppA PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.466e-46
Identity = 111/247 (44.94%), Postives = 151/247 (61.13%), Query Frame = 1
Query:    1 NTTAAIGKGFAIGSAALVSLALFGA-------FVSRAAISTV--------DVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTISGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSG---------------VLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLV 651
            NTT A+ KG+AIGSA L +L LF A       FV+ +A  T          +  P V +GL+ G +LPY F AM M +VG AA  +VEEVRRQF    G+M+GT KPDY   V + T A+IKEMI P  L +L+P++V  +F +  ++G               +L G +V+G+ +AIS ++ GGAWDNAKKYIE G        G KGSD HK+AV GDT+GDP KDT+GP++N +IK+  + +L+
Sbjct:  461 NTTKAVTKGYAIGSAGLGALVLFAAYNQDLKFFVADSAHHTYFAGVNPDFSLNNPYVVVGLLFGGLLPYLFGAMGMTAVGRAASAIVEEVRRQFREKPGIMQGTDKPDYGKAVDLLTKAAIKEMIIPSLLPVLSPIVV--YFLIYAIAGGGATGKSAAFSAVGAMLLGVIVTGLFVAISMTSGGGAWDNAKKYIEDG------HYGGKGSDAHKSAVTGDTVGDPYKDTAGPAVNPMIKITNIVALL 699          
BLAST of FC875380 vs. ExPASy Swiss-Prot
Match: HPPA_CAUCR (Pyrophosphate-energized proton pump OS=Caulobacter crescentus GN=hppA PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.278e-46
Identity = 103/243 (42.39%), Postives = 146/243 (60.08%), Query Frame = 1
Query:    1 NTTAAIGKGFAIGSAALVSLALF----------------GAFVSRAAISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTISGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSG----------VLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLV 651
            NTT A+ KG+AIGSA L +L LF                G+F       T D+  P V +GL+ G +LP+ F  ++M +VG AA  +V EVRRQF    G+M G  KP+Y   V I T A+I+EMI P  L +++P  V +FF ++ ++G          +L G +V+G+ +AIS ++ GGAWDNAKK IE G ++    L  KG + HKAAV GDT+GDP KDTSGP++N +IK+  + +L+
Sbjct:  463 NTTKAVTKGYAIGSAGLGALVLFAAYTEDLKFFSENAAPGSFFHGMGAVTFDLSNPYVVVGLLFGGLLPFLFGGLSMTAVGRAAESVVAEVRRQFRDNPGIMTGEVKPEYGKAVDILTKAAIREMIVPSLLPVVSP--VALFFVIQAIAGKVDAFAALGAMLMGVIVTGLFVAISMTSGGGAWDNAKKVIEEGFTDKNGVLHKKGGETHKAAVTGDTVGDPYKDTSGPAVNPMIKITNIVALL 703          
BLAST of FC875380 vs. ExPASy Swiss-Prot
Match: HPPA_PYRAE (Pyrophosphate-energized proton pump OS=Pyrobaculum aerophilum GN=hppA PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.505e-46
Identity = 101/236 (42.80%), Postives = 144/236 (61.02%), Query Frame = 1
Query:    1 NTTAAIGKGFAIGSAALVSLALFGAFVSRA------------------AISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTISGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVF 654
            NTT A  KG+AI SAAL +L LF A +                     ++S + ++   V IG  +G  L Y+FS+ T+++VG  A+++VEE+RRQF    G++E   +PDYA  V I+T  ++ E + PG   ++ PLI G+  G   L+G++ G++V+GV  A+  +N GGAWDNAKKYIE          G K ++ HKAAVIGDT+GDP+KDT GPSLN LIK++   S+VF
Sbjct:  473 NTTKATTKGYAIASAALAALVLFIALIFEIVYSASKILGKGIVDMISESLSGLQLINANVLIGAFLGVALVYFFSSRTLEAVGRTAMEIVEEIRRQFREKPGILEWKEQPDYARVVDIATRRALGEFLIPGLAAIVLPLITGLLLGWNALAGLIMGAIVAGVPRALLMANAGGAWDNAKKYIE--------IQGLKKTEMHKAAVIGDTVGDPMKDTVGPSLNPLIKVLNTLSVVF 700          
BLAST of FC875380 vs. ExPASy Swiss-Prot
Match: HPPA_RHIME (Pyrophosphate-energized proton pump OS=Rhizobium meliloti GN=hppA PE=3 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.373e-44
Identity = 105/244 (43.03%), Postives = 145/244 (59.43%), Query Frame = 1
Query:    1 NTTAAIGKGFAIGSAALVSLALFGAFVSRAA--------------ISTV--DVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTISGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGV-----------LAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLV 651
            NTT A+ KG+AIGSA L +L LF A+ +  A              + T+  D+  P V  GLI G ++PY F  + M +VG A   +VEEVRRQF    G+MEG  +PDY   V + T A+I+EMI P  L +L P++V  +FGV  +SG            L G +V+G+ +AIS ++ GGAWDNAKK  E G  +   T   KGS+ HKA+V GDT+GDP KDT+GP++N  IK+  + +L+
Sbjct:  464 NTTKAVTKGYAIGSAGLGALVLFAAYSNDLAYFAANGDKHPYFADVGTISFDLSNPYVVAGLIFGGLIPYLFGGIAMTAVGRAGSAVVEEVRRQFKEKPGIMEGKDRPDYGRAVDMLTKAAIREMIIPSLLPVLAPIVV--YFGVLLISGSKASAFAALGASLLGVIVNGLFVAISMTSGGGAWDNAKKSFEDGFVDRNGTRHMKGSEAHKASVTGDTVGDPYKDTAGPAVNPAIKITNIVALL 705          
BLAST of FC875380 vs. ExPASy Swiss-Prot
Match: HPPA_HELCL (Pyrophosphate-energized proton pump (Fragment) OS=Heliobacterium chlorum GN=hppA PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.341e-44
Identity = 93/172 (54.07%), Postives = 117/172 (68.02%), Query Frame = 1
Query:    1 NTTAAIGKGFAIGSAALVSLALFGAFVSRAAIS------------TVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTISGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNA 480
            NTTAA+ KGFAIGSAAL +LALF AF      S             +++L PK+ IGL +G  +P+ F A  M++VG AA +M+ EVRRQF  I GLMEG AKPDYA CV IST A+I++MI PG L ++TPLIVG  FG + L G+LAG  V+GV +AI  +N GGAWD+A
Sbjct:   26 NTTAAVAKGFAIGSAALTALALFTAFAEEVVKSPGVSSALHGSHFVLNLLEPKIIIGLFIGGTVPFLFCAFAMEAVGKAAFEMIGEVRRQFREIPGLMEGKAKPDYARCVDISTRAAIRQMIAPGLLAVITPLIVGFGFGAQALGGMLAGVTVAGVLLAIFMANAGGAWDHA 197          
BLAST of FC875380 vs. ExPASy Swiss-Prot
Match: HPPA_RHILO (Pyrophosphate-energized proton pump OS=Rhizobium loti GN=hppA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.994e-44
Identity = 104/244 (42.62%), Postives = 144/244 (59.02%), Query Frame = 1
Query:    1 NTTAAIGKGFAIGSAALVSLALFGAFVSRAAISTV----------------DVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTISGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSG-----------VLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLV 651
            NTT A+ KG+AIGSA L +L LF A+ +                       D+  P V  GLI G ++PY F  + M +VG AA  +VEEVR+QF    G+M GT+KP+YA  V + T A+I+EMI P  L +L PL+V  +FGV  +SG            L G +V+G+ +AIS ++ GGAWDNAKK  E G ++       KGS+ HKA+V GDT+GDP KDT+GP++N  IK+  + +L+
Sbjct:  464 NTTKAVTKGYAIGSAGLGALVLFAAYSNDLKFFAANGDKYPYFQGMGEISFDLSNPYVVAGLIFGGLIPYLFGGIAMTAVGRAAGAIVEEVRKQFREDPGIMAGTSKPNYARAVDLLTKAAIREMIIPSLLPVLAPLVV--YFGVLLISGSKASAFAALGASLLGVIVNGLFVAISMTSGGGAWDNAKKSFEDGFTDKDGVKHLKGSEAHKASVTGDTVGDPYKDTAGPAVNPAIKITNIVALL 705          
The following BLAST results are available for this feature:
BLAST of FC875380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
AVPX_ARATH1.788e-5247.06Pyrophosphate-energized membrane proton pump 3 OS=... [more]
HPPA_MYXXA3.373e-5150.22Pyrophosphate-energized proton pump (Fragment) OS=... [more]
HPPA_RHORT4.123e-4946.67Pyrophosphate-energized proton pump OS=Rhodospiril... [more]
HPPA1_RHOPA1.123e-4645.31Pyrophosphate-energized proton pump OS=Rhodopseudo... [more]
HPPA_BRAJA1.466e-4644.94Pyrophosphate-energized proton pump OS=Bradyrhizob... [more]
HPPA_CAUCR7.278e-4642.39Pyrophosphate-energized proton pump OS=Caulobacter... [more]
HPPA_PYRAE9.505e-4642.80Pyrophosphate-energized proton pump OS=Pyrobaculum... [more]
HPPA_RHIME1.373e-4443.03Pyrophosphate-energized proton pump OS=Rhizobium m... [more]
HPPA_HELCL2.341e-4454.07Pyrophosphate-energized proton pump (Fragment) OS=... [more]
HPPA_RHILO3.994e-4442.62Pyrophosphate-energized proton pump OS=Rhizobium l... [more]

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Properties
Property NameValue
Genbank descriptionC31403C09EF CTVClemen1 Citrus clementina cDNA clone C31403C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875380 ID=FC875380; Name=FC875380; organism=Citrus clementina; type=EST; length=664bp
AACACCACTGCAGCTATCGGAAAGGGTTTCGCCATTGGTTCTGCAGCTCT
TGTGTCGCTAGCCCTCTTTGGTGCCTTTGTGAGCCGTGCAGCTATTTCAA
CTGTTGATGTGTTGACTCCAAAAGTGTTTATTGGTTTGATTGTTGGTGCT
ATGCTTCCTTACTGGTTCTCTGCCATGACAATGAAGAGTGTGGGAAGTGC
AGCTCTTAAAATGGTTGAGGAAGTGCGCAGGCAATTTAACACCATCTCTG
GTCTTATGGAAGGCACTGCCAAACCTGATTATGCTACCTGTGTTAAGATC
TCCACCGATGCATCCATCAAAGAGATGATCCCACCTGGTGCCCTTGTCAT
GCTTACACCCCTTATTGTTGGTATCTTTTTTGGTGTGGAAACTCTCTCTG
GGGTCCTTGCCGGTTCCCTTGTCTCAGGTGTACAGATTGCTATCTCTGCA
TCCAACACTGGTGGTGCCTGGGATAACGCCAAGAAGTACATTGAGGCTGG
CGCTTCAGAGCACGCCAGAACTCTTGGTCCAAAAGGATCAGATCCACACA
AGGCTGCGGTCATTGGTGACACAATTGGGGATCCATTGAAGGACACATCT
GGACCATCACTTAACATCCTAATCAAGCTAATGGCAGTGGAATCACTTGT
TTTTGCTCCCTTTT
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