FC875380

Overview
NameFC875380
Unique NameFC875380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15219 contig Ccv1_Contig15219:114..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875380 vs. ExPASy Swiss-Prot
Match: HPPA_AGRT5 (Pyrophosphate-energized proton pump OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=hppA PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.812e-44
Identity = 101/244 (41.39%), Postives = 142/244 (58.20%), Query Frame = 1
Query:    1 NTTAAIGKGFAIGSAALVSLALFGAFVSRAAISTVD----------------VLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTISGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSG-----------VLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLV 651
            NTT A+ KG+AIGSA L +L LF A+ +  +    +                +  P V  GL+ G ++PY F  + M +VG AA  +VEEVRRQF    G+M GT KPDY   V + T A+I+EM+ P  L +L PL+V  +FGV  +SG            L G +++G+ +AIS ++ GGAWDNAKK  E G  +       KGS+ HKA+V GDT+GDP KDT+GP++N  IK+  + +L+
Sbjct:  466 NTTKAVTKGYAIGSAGLGALVLFAAYANDLSYFAANGDTYPYFKDIGEISFSLANPYVVAGLLFGGLIPYLFGGIAMTAVGKAASAIVEEVRRQFREKPGIMAGTEKPDYGRAVDLLTKAAIREMVIPSLLPVLAPLVV--YFGVLLISGSKASAFAALGASLLGVIINGLFVAISMTSGGGAWDNAKKSFEDGFIDKDGVRHVKGSEAHKASVTGDTVGDPYKDTAGPAVNPAIKITNIVALL 707          
BLAST of FC875380 vs. ExPASy Swiss-Prot
Match: HPPA_STRAW (Pyrophosphate-energized proton pump OS=Streptomyces avermitilis GN=hppA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.518e-43
Identity = 98/239 (41.00%), Postives = 142/239 (59.41%), Query Frame = 1
Query:    1 NTTAAIGKGFAIGSAALVSLALFGAFVSRAAIST-------------------VDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTISGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAP 660
            NTT AI KG AI +A L + ALFG++  R AI+T                   +D+  P   +GLI GA + + FS + + +V  +A  +V EVRRQF    G+M+ T +P+Y   V I T  +++E+  PG L +L P+ +G   GV  L   LAG++ +G  +A+  +N+GGAWDNAKK +E G        G KGS+ H A VIGDT+GDP KDT+GP++N L+K+M + +L+ AP
Sbjct:  511 NTTKAITKGIAIATAVLAASALFGSY--RDAITTAANDVGEKVSGAGAPMNLMMDISQPNNLVGLIAGAAVVFLFSGLAINAVSRSAGAVVYEVRRQFREHPGIMDYTEQPEYGRVVDICTKDALRELATPGLLAVLAPIAIGFTLGVGALGAYLAGAIGTGTLMAVFLANSGGAWDNAKKLVEDGHH------GGKGSEAHAATVIGDTVGDPFKDTAGPAINPLLKVMNLVALLIAP 741          
BLAST of FC875380 vs. ExPASy Swiss-Prot
Match: HPPA_BRUSU (Pyrophosphate-energized proton pump OS=Brucella suis GN=hppA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.518e-43
Identity = 102/244 (41.80%), Postives = 142/244 (58.20%), Query Frame = 1
Query:    1 NTTAAIGKGFAIGSAALVSLALFGAFVSRAAISTV----------------DVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTISGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGV-----------LAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLV 651
            NTT A+ KG+AIGSA L +L LF A+ +  A                    D+  P V  GLI G ++PY F  M M +VG A   +V+EVRRQF    G+M G  +PDYA  V + T A+I+EMI P  L +L P++V  +FGV  +SG            L G +++G+ +AIS ++ GGAWDNAKK  E G ++       KGS+ HKA+V GDT+GDP KDT+GP++N  IK+  + +L+
Sbjct:  468 NTTKAVTKGYAIGSAGLGALVLFAAYSNDLAYFAANGQIYPYFADMGPVSFDLSNPYVVAGLIFGGLIPYLFGGMAMTAVGRAGGAVVQEVRRQFREKPGIMTGKERPDYARAVDLLTKAAIREMIIPSLLPVLAPIVV--YFGVLLISGSKAAAFAALGASLLGVIINGLFVAISMTSGGGAWDNAKKSFEDGFTDADGVKHMKGSEAHKASVTGDTVGDPYKDTAGPAVNPAIKITNIVALL 709          
BLAST of FC875380 vs. ExPASy Swiss-Prot
Match: HPPA_BRUME (Pyrophosphate-energized proton pump OS=Brucella melitensis GN=hppA PE=3 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.518e-43
Identity = 102/244 (41.80%), Postives = 142/244 (58.20%), Query Frame = 1
Query:    1 NTTAAIGKGFAIGSAALVSLALFGAFVSRAAISTV----------------DVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTISGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGV-----------LAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLV 651
            NTT A+ KG+AIGSA L +L LF A+ +  A                    D+  P V  GLI G ++PY F  M M +VG A   +V+EVRRQF    G+M G  +PDYA  V + T A+I+EMI P  L +L P++V  +FGV  +SG            L G +++G+ +AIS ++ GGAWDNAKK  E G ++       KGS+ HKA+V GDT+GDP KDT+GP++N  IK+  + +L+
Sbjct:  468 NTTKAVTKGYAIGSAGLGALVLFAAYSNDLAYFAANGQIYPYFADMGPVSFDLSNPYVVAGLIFGGLIPYLFGGMAMTAVGRAGGAVVQEVRRQFREKPGIMTGKERPDYARAVDLLTKAAIREMIIPSLLPVLAPIVV--YFGVLLISGSKAAAFAALGASLLGVIINGLFVAISMTSGGGAWDNAKKSFEDGFTDADGVKHMKGSEAHKASVTGDTVGDPYKDTAGPAVNPAIKITNIVALL 709          
BLAST of FC875380 vs. ExPASy Swiss-Prot
Match: HPPA_OCHA4 (Pyrophosphate-energized proton pump OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=hppA PE=3 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.982e-43
Identity = 103/244 (42.21%), Postives = 142/244 (58.20%), Query Frame = 1
Query:    1 NTTAAIGKGFAIGSAALVSLALFGAFVSRAAISTV----------------DVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTISGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGV-----------LAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLV 651
            NTT A+ KG+AIGSA L +L LF A+ +  A                    D+  P V  GLI G ++PY F  M M +VG A   +V+EVRRQF    G+M G  +PDYA  V + T A+I+EMI P  L +L P++V  +FGV  +SG            L G +V+G+ +AIS ++ GGAWDNAKK  E G ++       KGS+ HKA+V GDT+GDP KDT+GP++N  IK+  + +L+
Sbjct:  468 NTTKAVTKGYAIGSAGLGALVLFAAYSNDLAYFAANGQTYPYFADMGPVSFDLSNPYVVAGLIFGGLIPYLFGGMAMTAVGRAGGAVVQEVRRQFREKPGIMTGKERPDYARAVDLLTRAAIREMIIPSLLPVLAPIVV--YFGVLLISGSKAAAFAALGASLLGVIVNGLFVAISMTSGGGAWDNAKKSFEDGFTDADGVKHLKGSEAHKASVTGDTVGDPYKDTAGPAVNPAIKITNIVALL 709          
BLAST of FC875380 vs. ExPASy Swiss-Prot
Match: HPPA_STRCO (Pyrophosphate-energized proton pump OS=Streptomyces coelicolor GN=hppA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.415e-43
Identity = 96/239 (40.17%), Postives = 142/239 (59.41%), Query Frame = 1
Query:    1 NTTAAIGKGFAIGSAALVSLALFGAFVSRAAIST-------------------VDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTISGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAP 660
            NTT AI KG AI +A L + ALFG++  R AI+T                   +D+  P   +GLI GA + + FS + + +V  +A  +V EVRRQF    G+M+ + KP+Y   V I T  +++E+  PG L ++ P+ +G   GV  L   LAG++ +G  +A+  +N+GG+WDNAKK +E G        G KGS+ H A VIGDT+GDP KDT+GP++N L+K+M + +L+ AP
Sbjct:  504 NTTKAITKGIAIATAVLAAAALFGSY--RDAITTGAADVGEKLSGEGAPMTLMMDISQPNNLVGLIAGAAVVFLFSGLAINAVSRSAGAVVYEVRRQFRERPGIMDYSEKPEYGKVVDICTRDALRELATPGLLAVMAPIFIGFTLGVGALGAFLAGAIGAGTLMAVFLANSGGSWDNAKKLVEDGHH------GGKGSEAHAATVIGDTVGDPFKDTAGPAINPLLKVMNLVALLIAP 734          
BLAST of FC875380 vs. ExPASy Swiss-Prot
Match: HPPA1_MYCDI (Pyrophosphate-energized proton pump 1 (Fragment) OS=Mycoplana dimorpha GN=hppA1 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.598e-39
Identity = 96/227 (42.29%), Postives = 130/227 (57.27%), Query Frame = 1
Query:   31 AIGSAALVSLALFGAFVSRAAISTV----------------DVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTISGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSG-----------VLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKL 630
            AIGSA L +L LF A+ +  +                    D+  P V  GLI G ++PY F  + M +VG AA  +VEEVRRQF    G+M+G  KP+Y   V + T A+I+EMI P  L +L PL+V  +FGV  +SG            L G +V+G+ +AIS ++ GGAWDNAKK  E G  +       KGS+ HKA+V GDT+GDP KDT+GP++N  IK+
Sbjct:    1 AIGSAGLGALVLFAAYSNDLSYFAANGDKYPYFANIGEISFDLSNPYVVAGLIFGGLIPYLFGGIAMTAVGRAAGSIVEEVRRQFKEKPGIMQGKDKPNYGRAVDLLTKAAIREMIVPSLLPVLAPLVV--YFGVLLISGSKASAFAALGASLLGVIVNGLFVAISMTSGGGAWDNAKKSFEDGFVDKDGQRHMKGSEAHKASVTGDTVGDPYKDTAGPAVNPAIKI 225          
BLAST of FC875380 vs. ExPASy Swiss-Prot
Match: HPPA_RHIRD (Pyrophosphate-energized proton pump (Fragment) OS=Rhizobium radiobacter GN=hppA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.065e-37
Identity = 84/160 (52.50%), Postives = 104/160 (65.00%), Query Frame = 1
Query:    1 NTTAAIGKGFAIGSAALVSLALFGAFVSRAAIS------------TVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTISGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAI 444
            NTTAAI KGFAIGSAAL +LALF AF    A +             V++  P V IG+ +GA LP+   A TM++VG AA +M+EEVRRQF  I G+MEGT +PDYA CV IST A+I+EM+ PG   +  PLIVG   G + L+G LAG   SGV +AI
Sbjct:   26 NTTAAIAKGFAIGSAALTALALFTAFAEEIAKNPKLTGLLVDGHLVVNLTEPGVIIGIFLGATLPFLVCAFTMEAVGKAAFEMIEEVRRQFREIPGIMEGTGRPDYAKCVDISTKAAIREMMLPGVFAVGAPLIVGFLLGAKALAGFLAGVTASGVLLAI 185          
BLAST of FC875380 vs. ExPASy Swiss-Prot
Match: HPPA_CHRVI (Pyrophosphate-energized proton pump (Fragment) OS=Chromatium vinosum GN=hppA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.288e-34
Identity = 79/172 (45.93%), Postives = 106/172 (61.63%), Query Frame = 1
Query:    1 NTTAAIGKGFAIGSAALVSLALFGAFVSRAAIS----TVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTISGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFF--------GVETLSGVLAGSLVSGVQIAISASNTGGAWDNA 480
            NTT A+ KG+AIGSA L +L LF  +     ++       +  P V IGL +G ++PY F AM M++VG AA  +V EVRRQF  I G+MEGTAKPDY+  V + T A+IKEM+ P  L +L P+ V I          G+  L G+L G++V+G+ +AIS    GGAWDNA
Sbjct:   26 NTTKAVTKGYAIGSAGLAALVLFADYTHNLEVAGKMQVFSLSDPAVIIGLFIGGLVPYLFGAMAMEAVGRAAGSVVIEVRRQFREIKGIMEGTAKPDYSRAVDLLTKAAIKEMVVPSLLPILVPVAVAIGMNILMGDGAGIRALGGMLIGTIVTGLFVAISMCTGGGAWDNA 197          
BLAST of FC875380 vs. ExPASy Swiss-Prot
Match: HPPA_CHLTE (Pyrophosphate-energized proton pump OS=Chlorobium tepidum GN=hppA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.204e-21
Identity = 76/242 (31.40%), Postives = 116/242 (47.93%), Query Frame = 1
Query:    1 NTTAAIGKGFAIGSAALVS--------LALFGAFVSRAAISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTISGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLS--------GVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIK------LMAVESLVFAP 660
            NT  A  K   IG+A + S        + L G      AI+ + +L P   +GL++G  + YWF+  +M +V + A   V  +++    + G+ + + + D    V+I T  + K MI          L + IFF     +        G L    + G+  AI  +N GGAWDNAKK +E         L  KG++ H A+V+GDT+GDP KDTS  +LN +IK      L+A+E  +  P
Sbjct:  494 NTFKATAKPVLIGTAVVGSTTMIFSIIMILTGGLADTGAIAKLSILWPPFLLGLLMGGAVIYWFTGASMNAVTTGAYYAVAFIKKNIK-LDGVTKASTE-DSKKVVEICTRFAQKGMIN---------LFLTIFFSTLAFACLESYLFIGYLISIALFGLYQAIFMANAGGAWDNAKKVVET-------ELHAKGTELHDASVVGDTVGDPFKDTSSVALNPIIKFTTLFGLLAIELAIKLP 717          
The following BLAST results are available for this feature:
BLAST of FC875380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
HPPA_AGRT56.812e-4441.39Pyrophosphate-energized proton pump OS=Agrobacteri... [more]
HPPA_STRAW1.518e-4341.00Pyrophosphate-energized proton pump OS=Streptomyce... [more]
HPPA_BRUSU1.518e-4341.80Pyrophosphate-energized proton pump OS=Brucella su... [more]
HPPA_BRUME1.518e-4341.80Pyrophosphate-energized proton pump OS=Brucella me... [more]
HPPA_OCHA41.982e-4342.21Pyrophosphate-energized proton pump OS=Ochrobactru... [more]
HPPA_STRCO4.415e-4340.17Pyrophosphate-energized proton pump OS=Streptomyce... [more]
HPPA1_MYCDI6.598e-3942.29Pyrophosphate-energized proton pump 1 (Fragment) O... [more]
HPPA_RHIRD8.065e-3752.50Pyrophosphate-energized proton pump (Fragment) OS=... [more]
HPPA_CHRVI1.288e-3445.93Pyrophosphate-energized proton pump (Fragment) OS=... [more]
HPPA_CHLTE6.204e-2131.40Pyrophosphate-energized proton pump OS=Chlorobium ... [more]

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Properties
Property NameValue
Genbank descriptionC31403C09EF CTVClemen1 Citrus clementina cDNA clone C31403C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875380 ID=FC875380; Name=FC875380; organism=Citrus clementina; type=EST; length=664bp
AACACCACTGCAGCTATCGGAAAGGGTTTCGCCATTGGTTCTGCAGCTCT
TGTGTCGCTAGCCCTCTTTGGTGCCTTTGTGAGCCGTGCAGCTATTTCAA
CTGTTGATGTGTTGACTCCAAAAGTGTTTATTGGTTTGATTGTTGGTGCT
ATGCTTCCTTACTGGTTCTCTGCCATGACAATGAAGAGTGTGGGAAGTGC
AGCTCTTAAAATGGTTGAGGAAGTGCGCAGGCAATTTAACACCATCTCTG
GTCTTATGGAAGGCACTGCCAAACCTGATTATGCTACCTGTGTTAAGATC
TCCACCGATGCATCCATCAAAGAGATGATCCCACCTGGTGCCCTTGTCAT
GCTTACACCCCTTATTGTTGGTATCTTTTTTGGTGTGGAAACTCTCTCTG
GGGTCCTTGCCGGTTCCCTTGTCTCAGGTGTACAGATTGCTATCTCTGCA
TCCAACACTGGTGGTGCCTGGGATAACGCCAAGAAGTACATTGAGGCTGG
CGCTTCAGAGCACGCCAGAACTCTTGGTCCAAAAGGATCAGATCCACACA
AGGCTGCGGTCATTGGTGACACAATTGGGGATCCATTGAAGGACACATCT
GGACCATCACTTAACATCCTAATCAAGCTAATGGCAGTGGAATCACTTGT
TTTTGCTCCCTTTT
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