FC875382

Overview
NameFC875382
Unique NameFC875382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:7..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.065e-40
Identity = 85/178 (47.75%), Postives = 104/178 (58.43%), Query Frame = 2
Query:  176 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPRRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPSHHATKSLPTNGTISND 709
            +G II+R MFE +L +R D  C    FYTYDAFI+AA  FP FG +GN+  R RE+AAFF QT HETTGGW  AP G +AWGYC ++EI+P  P           YYGRGPIQLT  YNY                    ++DPV++F++AIWFWMTAQ P       +    T S D
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSDP----------PYYGRGPIQLTHKYNYQ--LAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGD 191          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.249e-39
Identity = 82/172 (47.67%), Postives = 102/172 (59.30%), Query Frame = 2
Query:  158 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPRRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ--PPSHH 667
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HET GG      G +  GYCF+ +I            +  +YYGRGPIQLT   NY R                  ATDP++SFK+AIWFWMT Q   PS H
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIE-----------QSDRYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCH 177          

HSP 2 Score: 24.6386 bits (52), Expect = 1.249e-39
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  658 KPSCHEVITDEW 693
            KPSCH VI  +W
Sbjct:  173 KPSCHNVIIGQW 184          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.249e-39
Identity = 82/172 (47.67%), Postives = 103/172 (59.88%), Query Frame = 2
Query:  158 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPRRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ--PPSHH 667
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HET GG      G +  GYCF+ +I            +  +YYGRGPIQLT   NY R                  ATDP++SF++AIWFWMTAQ   PS H
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQID-----------QSDRYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCH 177          

HSP 2 Score: 24.6386 bits (52), Expect = 1.249e-39
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  658 KPSCHEVITDEW 693
            KPSCH VI  +W
Sbjct:  173 KPSCHNVIIGQW 184          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.753e-38
Identity = 81/174 (46.55%), Postives = 101/174 (58.05%), Query Frame = 2
Query:  158 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS--PYC--NLNYPRRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 658
            G+ G  +  I+SR +F+ +L +RND  CPA  FYTYDAF+ AA AFP F  +G +     RE+AAF AQT HETTGGW  AP G YAWGYCF  E    +   YC  +  +P     KYYGRGPIQL++N+NY                    A+D  +SF +A WFWMT Q P
Sbjct:   75 GSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNY--GPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSP 246          

HSP 2 Score: 24.6386 bits (52), Expect = 1.753e-38
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  658 KPSCHEVITDEW 693
            KPSCH V T +W
Sbjct:  247 KPSCHAVATGQW 258          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.206e-37
Identity = 76/181 (41.99%), Postives = 107/181 (59.12%), Query Frame = 2
Query:  191 SREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCN----LNYPRRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPSHHATKSLPTNGTISNDVTPA 721
            +  MFE +LP RN+  CP +GFYTYDA+  A + +P FG +G++  R RE+AAFFAQT  ET+G         + WGYC ++E++P S YC+     +YP    YYGRGP+QL WNYNY  C                 ATDPVLSF++A+WFWM     + H+T +   +  I+ + +P+
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGEC--GNYLGQNLLDEPEKVATDPVLSFEAALWFWM-----NPHSTGAPSCHEVITGEWSPS 241          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.121e-37
Identity = 74/180 (41.11%), Postives = 102/180 (56.67%), Query Frame = 2
Query:  152 GHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN------YPRRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ--PPSHH 667
            G+      +  I+S +++  L  +++D  CPARGFYTY +F+ AA  FP F  +G    R RE+AAF AQ  HETTGGW  AP G YAWG C+  EI+P S YC+        YP +  Y+GRGPIQ++WN+NY                     +D  ++F++A+WFWMT +   PS H
Sbjct:   41 GYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGK-SYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSD--IAFQTALWFWMTPRDTKPSCH 217          

HSP 2 Score: 24.2534 bits (51), Expect = 7.121e-37
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  655 TKPSCHEVITDEW 693
            TKPSCH+V+  E+
Sbjct:  212 TKPSCHQVMVGEY 224          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.212e-36
Identity = 81/172 (47.09%), Postives = 101/172 (58.72%), Query Frame = 2
Query:  158 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPRRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ--PPSHH 667
            G+   ++G I++ ++F ++L  RND RCPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HETTGG   A  G +A GYCF+ E                 +YGRGPIQLT   NY                    ATD  +SFK+AIWFWMTAQ   PS H
Sbjct:   13 GSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVRE----------GNQMGSGFYGRGPIQLTGQSNY--DLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCH 171          

HSP 2 Score: 27.7202 bits (60), Expect = 1.212e-36
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  658 KPSCHEVITDEW 693
            KPSCH+VIT +W
Sbjct:  167 KPSCHDVITGQW 178          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.703e-35
Identity = 86/191 (45.03%), Postives = 107/191 (56.02%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEI----SPPSPYCNLNYPRRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ--PPSHH 667
            C +  +     +G    G  +G +I++ +F  +LP R++ +CPARGFYTYDAFI AA +FPAFG SG    +  RE+AAFF QT HETTGG R +   ++ WGYCF  EI    SPP             YYGRGPIQLT   NY                    +TD V+SFK+AIWFWMTAQ   PS H
Sbjct:   14 CAAASLLAVAASGAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGGTRGS-SDQFQWGYCFKEEINKATSPP-------------YYGRGPIQLTGQSNYQAA--GNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCH 186          

HSP 2 Score: 24.6386 bits (52), Expect = 1.703e-35
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  658 KPSCHEVITDEW 693
            KPSCH+VI   W
Sbjct:  182 KPSCHDVILGRW 193          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.905e-35
Identity = 81/172 (47.09%), Postives = 97/172 (56.40%), Query Frame = 2
Query:  158 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPRRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ--PPSHH 667
            GT    +G I++ ++F+ +L  RND RC A  FYTYDAFI AA +FP FG +G++T R +EIAAFF QT HETTGG   +P G YA GYCF+ E                 YYGRGPIQLT   NY                    ATD  +SFK+AIWFWMT Q   PS H
Sbjct:   20 GTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGTL-SPDGPYAGGYCFLRE----------GNQMGNGYYGRGPIQLTGQSNY--DLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCH 178          

HSP 2 Score: 26.9498 bits (58), Expect = 4.905e-35
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  658 KPSCHEVITDEW 693
            KPSCH+VIT  W
Sbjct:  174 KPSCHDVITGRW 185          
BLAST of FC875382 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 2.388e-34
Identity = 77/180 (42.78%), Postives = 90/180 (50.00%), Query Frame = 2
Query:  119 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPRRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 658
            G G   G    G G   G L  II   MF+D+L YRND +CPA GFYTY+AFI AAK FP FGN+G++ MR REIAAF  QT HET G W  A G +Y WGYC +                              NYNY  C                  TDP ++FK+A+WFWMT Q P
Sbjct:   66 GGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM------------------------------NYNYGLCGDDLNLPLLQEPELVE--TDPFIAFKTALWFWMTPQSP 213          

HSP 2 Score: 26.9498 bits (58), Expect = 2.388e-34
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  658 KPSCHEVITDEW 693
            KPSCH VIT+ W
Sbjct:  214 KPSCHAVITESW 225          
The following BLAST results are available for this feature:
BLAST of FC875382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI11_ORYSJ4.065e-4047.75Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLLC1.249e-3947.67Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIA_SOLCI1.249e-3947.67Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI12_ORYSJ1.753e-3846.55Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI8_POPTR4.206e-3741.99Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI10_ORYSJ7.121e-3741.11Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_SOLLC1.212e-3647.09Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI8_ORYSJ1.703e-3545.03Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_PETHY4.905e-3547.09Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIB_POPTR2.388e-3442.78Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]

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Properties
Property NameValue
Genbank descriptionC31403C11EF CTVClemen1 Citrus clementina cDNA clone C31403C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875382 ID=FC875382; Name=FC875382; organism=Citrus clementina; type=EST; length=722bp
GACCCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAGGC
TTATTGCGTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAGGA
GGCTCAGCACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATAC
CGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGA
TGTTTGAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGA
GGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGC
CTTTGGTAACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGCCT
TTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCGCGATGCACCT
GGTGGAGAATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCCTCC
GTCCCCCTACTGTAATCTTAACTATCCACGTCGAGGGAAGTACTATGGCC
GAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGAGAA
GACCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTAC
TGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACCGCAC
AGCCACCAAGCCATCATGCCACGAAGTCATTACCGACGAATGGAACCATC
AGCAATGACGTAACGCCGGCCG
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