FC875388

Overview
NameFC875388
Unique NameFC875388
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875388 vs. ExPASy Swiss-Prot
Match: TPS2_YEAST (Trehalose-phosphatase OS=Saccharomyces cerevisiae GN=TPS2 PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 61/183 (33.33%), Postives = 91/183 (49.73%), Query Frame = 2
Query:   26 DFDWKEIAEPVMKLYTETTDGSFIEDKETAIVWHHQHADPHFGSCQAKELLDHLENVLANEPVVVKRGQHIVEVKPQGVSKGIVVKNL--------------ISTMRSRGKSPDFVLCIGDDRSDEDMFESI--------EQAVADPSVPGIAEVFACTVG--QKPSMAKYYLDDTAEVINLL 502
            D  W+     VM+ +T  T GSFIE K+ A+ WH++   P  G   AKEL + L +   +  + V  G+  +EV+P+ V+KG +VK L              IS    + + PDFVLC+GDD +DEDMF  +        E+     +  G    +  TVG   K ++AK +L D  +V+  L
Sbjct:  661 DMSWQVRVNEVMEEFTTRTPGSFIERKKVALTWHYRRTVPELGEFHAKELKEKLLSFTDDFDLEVMDGKANIEVRPRFVNKGEIVKRLVWHQHGKPQDMLKGISEKLPKDEMPDFVLCLGDDFTDEDMFRQLNTIETCWKEKYPDQKNQWGNYGFYPVTVGSASKKTVAKAHLTDPQQVLETL 843          
BLAST of FC875388 vs. ExPASy Swiss-Prot
Match: TPS2_SCHPO (Trehalose-phosphatase OS=Schizosaccharomyces pombe GN=tps2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 43/124 (34.68%), Postives = 71/124 (57.26%), Query Frame = 2
Query:    2 WEICSLTRDFDWKEIAEPVMKLYTETTDGSFIEDKETAIVWHHQHADPHFGSCQAKELLDHLENVLANEPVVVKRGQHIVEVKPQGVSKGIVVKNLISTMRSRGKSPDFVLCIGDDRSDEDMFE 373
            W  C+   D  WK+      + Y E T GS+IE+K+ +I W +Q+A+  +   Q+ E   +LE++L +  V +   +  +EV P  ++KG +V+ ++     R  S DFV C GDD++DE+MFE
Sbjct:  656 WSSCAENLDLSWKDTVRDFFQYYVERTPGSYIEEKKHSISWCYQNANTTYSKFQSLECQTNLEDMLKHYDVEISPAKSFLEVHPNYLNKGSIVRRIL----KRSGSVDFVFCAGDDKTDENMFE 775          
BLAST of FC875388 vs. ExPASy Swiss-Prot
Match: TPS4_ARATH (Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 4 OS=Arabidopsis thaliana GN=TPS4 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 56/190 (29.47%), Postives = 100/190 (52.63%), Query Frame = 2
Query:   26 DFDWKEIAEPVMKLYTETTDGSFIEDKETAIVWHHQHADPHFGSCQAKELLDHL-ENVLANEPVVVKRGQHIVEVKPQGVSKGIVVKNLISTM---RSRGKSPDFVLCIGDD-RSDEDMF-----------ESIEQAVADPSVPGIAEV--------FACTVGQKPSMAKYYLDDTAEVINLLEGLATES 523
            + +W +  + V K +TE T GS++E  E ++VW++++AD  FG  QA+++L HL    ++N  V V RG   VEV   GV+KG  ++ ++  +   +S     D+VLCIG     DED++           +S+  + +D      + +        F+  +GQ  + A+Y+LD + +V+ L+  L T +
Sbjct:  604 NLEWIDGVKHVFKYFTERTPGSYLETSEASLVWNYENADAEFGRAQARDMLQHLWAGPISNASVDVVRGGQSVEVHAVGVTKGSAMERILGEIVHNKSMATPIDYVLCIGCFLGKDEDVYTFFEPELTKKAKSLSSSGSDSPKKVSSTIVDLKGENYFSVAIGQTHTKARYFLDSSDDVVKLIGKLCTHN 793          
BLAST of FC875388 vs. ExPASy Swiss-Prot
Match: TPSA_DICDI (Alpha,alpha-trehalose-phosphate synthase [UDP-forming] A OS=Dictyostelium discoideum GN=tpsA PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 54/167 (32.34%), Postives = 82/167 (49.10%), Query Frame = 2
Query:    2 WEICSLTRDFDWKEIAEPVMKLYTETTDGSFIEDKETAIVWHHQHADPHFGSCQAKELLDHLENVLANEPVVVKRGQHIVEVKPQGVSKGIVVKNLISTMRSRGKSPDFVLCIGDDRSDEDMFESIEQAVADPSVPGIAEVFACTVGQKPSMAKYYLDDTAEVINLL 502
            WE    + D  WKE   P+ K +T  T GSF E+KE    WH+++ADP FGS QA+EL  HL+N+    P+ V  G   + V+   ++    +K +I+    +G   D +L IGD         + +            ++F  +VG+K     Y+L D AEV  L+
Sbjct:  582 WEQQVPSMDLSWKETIRPLFKYFTLRTPGSFFEEKEMLFTWHYRNADPIFGSIQARELHLHLDNL----PLDVIVGDKTLGVRSYNINPLSSMKKVITDTIPKGL--DLILLIGDTHIHPSELPTFD-----------GKIFNISVGKKSVKDSYHLSDPAEVNYLI 731          
BLAST of FC875388 vs. ExPASy Swiss-Prot
Match: TPS3_ARATH (Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 3 OS=Arabidopsis thaliana GN=TPS3 PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 53/201 (26.37%), Postives = 94/201 (46.77%), Query Frame = 2
Query:   26 DFDWKEIAEPVMKLYTETTDGSFIEDKETAIVWHHQHADPHFGSCQAKELLDHL-ENVLANEPVVVKRGQHIVEVKPQGVSKGIVVKNLISTM---RSRGKSPDFVLCIGDD-RSDEDMFESIEQAVADPSVPGIA-------------------------EVFACTVGQKPSMAKYYLDDTAEVINLLEGLATESVHSKS 538
            + DW +  + V K +T+ T  SF E  +T++VW++++AD  FG  QA++LL +L    ++N    V RG++ VEV   GV+K   + +++  +   ++     D+V C G     DED++   E  +  P +                               F+  +GQ  + A+Y +D +  V+NLL  LA  +  + S
Sbjct:  524 NLDWVDGLKNVFKYFTDRTPRSFFEASKTSLVWNYEYADVEFGRAQARDLLQYLWAGPISNASAEVVRGKYSVEVHAIGVTKEPEIGHILGEIVHKKAMTTPIDYVFCSGYFLEKDEDIYTFFESEILSPKLSHETRSKSSSSNHSLEKKVSLNVLDLKQENYFSTAIGQARTKARYVVDSSHNVVNLLHKLAVANTTTTS 724          
BLAST of FC875388 vs. ExPASy Swiss-Prot
Match: TPS1_ARATH (Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 OS=Arabidopsis thaliana GN=TPS1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 45/136 (33.09%), Postives = 76/136 (55.88%), Query Frame = 2
Query:   26 DFDWKEIAEPVMKLYTETTDGSFIEDKETAIVWHHQHADPHFGSCQAKELLDHL-ENVLANEPVVVKRGQHIVEVKPQGVSKGIVVKNLISTM---RSRGKSPDFVLCIGDD-RSDEDMFESIEQAVADPSVPGIA 418
            + +W +  + V K +TE T  S  E ++T+++W++++AD  FG  QA++LL HL    ++N  V V +G   VEV+  GV+KG  +  ++  +   +S     D+VLCIG     DED++   E  +    +P IA
Sbjct:  686 NMEWVDSVKHVFKYFTERTPRSHFETRDTSLIWNYKYADIEFGRLQARDLLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPS-DMPAIA 820          
The following BLAST results are available for this feature:
BLAST of FC875388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
TPS2_YEAST2.493e-1833.33Trehalose-phosphatase OS=Saccharomyces cerevisiae ... [more]
TPS2_SCHPO1.616e-1734.68Trehalose-phosphatase OS=Schizosaccharomyces pombe... [more]
TPS4_ARATH3.599e-1729.47Probable alpha,alpha-trehalose-phosphate synthase ... [more]
TPSA_DICDI6.788e-1632.34Alpha,alpha-trehalose-phosphate synthase [UDP-form... [more]
TPS3_ARATH6.354e-1426.37Probable alpha,alpha-trehalose-phosphate synthase ... [more]
TPS1_ARATH1.084e-1333.09Alpha,alpha-trehalose-phosphate synthase [UDP-form... [more]

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Properties
Property NameValue
Genbank descriptionC31403D05EF CTVClemen1 Citrus clementina cDNA clone C31403D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875388 ID=FC875388; Name=FC875388; organism=Citrus clementina; type=EST; length=706bp
ATGGGAAATTTGCTCGTTGACAAGAGACTTTGATTGGAAAGAGATTGCAG
AACCTGTAATGAAGCTTTATACTGAGACAACCGATGGCTCTTTCATAGAG
GATAAAGAAACTGCAATTGTGTGGCACCACCAGCACGCCGACCCTCATTT
TGGCTCATGCCAGGCTAAAGAGCTTCTTGACCACTTGGAAAATGTTCTTG
CTAATGAGCCTGTTGTTGTCAAAAGAGGCCAACACATTGTTGAGGTCAAG
CCACAGGGAGTAAGCAAAGGCATTGTTGTAAAAAACTTGATTTCAACTAT
GCGAAGTAGGGGGAAGTCTCCAGATTTTGTGCTGTGCATAGGGGATGACC
GTTCTGATGAAGATATGTTCGAGAGCATTGAGCAAGCTGTTGCCGATCCA
TCGGTACCAGGGATTGCAGAAGTATTTGCGTGTACAGTCGGTCAGAAACC
GAGCATGGCTAAATATTACCTTGATGATACTGCAGAAGTCATAAACTTGC
TTGAAGGCCTTGCTACAGAATCTGTACATTCTAAGTCGGCATCCTACCAG
GAATCACATGAAGACTTGTTACTTTGAATAAAAGGTTAGAATGAACATAG
TGAAAAAGTCAAATCTGGGCTTAGGGCAATTGATGATACAGATATCCTTG
TACAGAAAAATACTTTTTTCTTTTCTTTTTTTTTTTATAACTTTTACAGG
TTCATT
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