FC875389

Overview
NameFC875389
Unique NameFC875389
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3995 contig Ccv1_Contig3995:58..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFA4D_ORYSJ (Heat stress transcription factor A-4d OS=Oryza sativa subsp. japonica GN=HSFA4D PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.598e-51
Identity = 96/172 (55.81%), Postives = 128/172 (74.42%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHS-HPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQ 609
            FLIKTY+MV+D++T+ +VSW     SFVVWNP +F+R LLP YFKHNNFSSFIRQLNTYGFRKIDPE+WEF+N+DF++   HLLKNIHRRKP+HSHS   Q  G   + ER   EE++ RL +EKS L A++ R  QQ+     Q++ +  R+ +M+QRQ+N++  L + +Q
Sbjct:   21 FLIKTYEMVEDAATNHVVSWGPGGASFVVWNPLDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPERWEFANEDFIRGHTHLLKNIHRRKPVHSHSLQNQINGPLAESERRELEEEINRLKYEKSILVADLQRQNQQQYVINWQMQAMEGRLVAMEQRQKNIVASLCEMLQ 192          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFA4C_ARATH (Heat stress transcription factor A-4c OS=Arabidopsis thaliana GN=HSFA4C PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.598e-51
Identity = 94/175 (53.71%), Postives = 129/175 (73.71%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHS--HPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNP 615
            FL KTY+MVDDSS+D +V+WS+N  SF+V NP EF+R LLP +FKH NFSSFIRQLNTYGFRK+DPEKWEF NDDFV+ + +L+KNIHRRKP+HSHS  + Q Q    + ER + E+Q+ERL +EK  L A +   +Q+R   +LQ+  L  R+  M+Q Q++++ ++ + +  P
Sbjct:   14 FLTKTYEMVDDSSSDSVVAWSENNKSFIVKNPAEFSRDLLPRFFKHKNFSSFIRQLNTYGFRKVDPEKWEFLNDDFVRGRPYLMKNIHRRKPVHSHSLVNLQAQNPLTESERRSMEDQIERLKNEKEGLLAELQNQEQERKEFELQVTTLKDRLQHMEQHQKSIVAYVSQVLGKP 188          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFA2B_ORYSJ (Heat stress transcription factor A-2b OS=Oryza sativa subsp. japonica GN=HSFA2B PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.936e-50
Identity = 90/185 (48.65%), Postives = 132/185 (71.35%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRK-PIHSHSHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARKIE 648
            FL KTYDMVDD+ TD  VSWS   NSFVVW+P  FA +LLP +FKHNNFSSF+RQLNTYGFRK+DP++WEF+N++F++ +RHLLKNI RRK P H+ S+ Q+ G  ++     ++ +++RL  +K  L A +V+L+Q++   K  L+ +  R+   +QRQ+ ++ FL + ++NP F+  L  + E
Sbjct:   53 FLTKTYDMVDDAGTDAAVSWSATSNSFVVWDPHAFATVLLPRFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANENFLRGQRHLLKNIKRRKPPSHTASNQQSLGPYLEVGHFGYDAEIDRLKRDKQLLMAEVVKLRQEQQNTKANLKAMEDRLQGTEQRQQQMMAFLARVMKNPEFLKQLMSQNE 237          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFA2E_ORYSJ (Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.141e-50
Identity = 88/184 (47.83%), Postives = 131/184 (71.20%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARKIE 648
            FL KTYDMVDD +TD +VSWS   NSFVVW+P  F  +LLP YFKHNNFSSF+RQLNTYGFRK+DP+KWEF+N+ F++ ++HLLK+I RRKP +S    Q+ GS ++     +E ++++L  +K  L A +V+L+Q++   K  L+ + Q++   +Q+Q++++ FL + + NP F+  L  + E
Sbjct:   39 FLTKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGNVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLRGQKHLLKSIKRRKPPNSSPSQQSLGSFLEVGHFGYEGEIDQLKRDKHLLMAEVVKLRQEQQNTKSDLQAMEQKLQGTEQKQQHMMAFLSRVMHNPEFIRQLFSQSE 222          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFA4B_ORYSJ (Heat stress transcription factor A-4b OS=Oryza sativa subsp. japonica GN=HSFA4B PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.821e-48
Identity = 90/183 (49.18%), Postives = 130/183 (71.04%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSH-SHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARK 642
            FL KTY+MVDD STD +V W+    SFVV N PEF R LLP YFKHNNFSSF+RQLNTYGFRK+DPE+WEF+N+DF+K +RH LKNIHRRKPI SH SH Q  G   D ER  +EE++ERL  + +AL + +     ++   + +++ L +++  ++ +Q +L++++++ V+ P F+    ++
Sbjct:   13 FLSKTYEMVDDPSTDAVVGWTPAGTSFVVANQPEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQWEFANEDFIKGQRHRLKNIHRRKPIFSHSSHSQGAGPLTDNERKDYEEEIERLKSDNAALSSELQNNTLKKLNMEKRMQALEEKLFVVEDQQRSLISYVREIVKAPGFLSSFVQQ 195          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSFA2_ARATH (Heat stress transcription factor A-2 OS=Arabidopsis thaliana GN=HSFA2 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.320e-47
Identity = 92/183 (50.27%), Postives = 132/183 (72.13%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSS---VDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLA 636
            FL KTY+MV+D +TD +VSWS+ +NSFVVW+  +F+  LLP YFKH+NFSSFIRQLNTYGFRKIDP++WEF+N+ F+  ++HLLKNI RR+ +   +  Q QGS    V+  +  F+ ++ERL  +   L A +VRL+QQ+ ++K Q+  + QR+   ++RQ+ ++TFL KA+ NP FV   A
Sbjct:   45 FLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRNMGLQNVNQ-QGSGMSCVEVGQYGFDGEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMMTFLAKALNNPNFVQQFA 226          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSF30_SOLPE (Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.320e-47
Identity = 83/188 (44.15%), Postives = 135/188 (71.81%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFV-DHLARKIESMD 657
            FL KTY+MV+DSSTD+++SWS  +NSF+VW+  +F+  LLP +FKH+NFSSFIRQLNTYGFRK+DP++WEF+N+ F+  ++HLLK I RR+ +    + Q  G+ ++      EE++ERL  +K+ L   IV+L+QQ+ + + Q+  + ++I++ +++Q  +++FL K   NPTF+  +L +++   D
Sbjct:   32 FLSKTYEMVEDSSTDQVISWSTTRNSFIVWDSHKFSTTLLPRFFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRNVGQSMNQQGSGACIEIGYYGMEEELERLKRDKNVLMTEIVKLRQQQQSTRNQIIAMGEKIETQERKQVQMMSFLAKIFSNPTFLQQYLDKQVHRKD 219          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFA2C_ORYSJ (Heat stress transcription factor A-2c OS=Oryza sativa subsp. japonica GN=HSFA2C PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.548e-46
Identity = 93/199 (46.73%), Postives = 136/199 (68.34%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHS--HSHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARKIESMD--ISAYNKKR 681
            FL KTYD+V+D +TD +VSWS   NSFVVW+P  FA LLLP  FKHNNFSSF+RQLNTYGFRK+DP++WEF+N+ F++ +RHLLK I RRKP  +   S  Q+  S ++     FEE+++RL  +K+ L   +V+L+Q++   K  ++ +  R+ + +Q+Q  ++ FL +A++NP F   LA++ E       A +KKR
Sbjct:   43 FLTKTYDLVEDPATDGVVSWSRAGNSFVVWDPHVFADLLLPRLFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKTIKRRKPPSNAPPSQQQSLTSCLEVGEFGFEEEIDRLKRDKNILITEVVKLRQEQQATKDHVKAMEDRLRAAEQKQVQMMGFLARAMRNPEFFQQLAQQKEKRKELEDAISKKR 241          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFA6B_ARATH (Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.711e-45
Identity = 87/206 (42.23%), Postives = 136/206 (66.02%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSS---------VDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARKIESMD--ISAYNKKR 681
            FL KTYD+V+DS T+ +VSWS + NSF+VW+P  F+  LLP +FKHNNFSSF+RQLNTYGFRK++P++WEF+N+ F++ ++HLLKNI RRK  ++ +  Q   SS         ++  R   + +M+ L  +K  L   +VRL+QQ+ + K+ L  + +++   + +Q+ +++FL +A+QNP F+  L  + E       A +KKR
Sbjct:   62 FLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNNSNQMQQPQSSEQQSLDNFCIEVGRYGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLTLIEEKLKKTESKQKQMMSFLARAMQNPDFIQQLVEQKEKRKEIEEAISKKR 267          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFA2D_ORYSJ (Heat stress transcription factor A-2d OS=Oryza sativa subsp. japonica GN=HSFA2D PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.892e-44
Identity = 85/198 (42.93%), Postives = 133/198 (67.17%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPI-HSHSHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARKIESMD--ISAYNKKR 681
            FL KT+D+V D +TD +VSW    +SFVVW+P  FA + LP +FKHNNFSSF+RQLNTYGFRKIDP++WEF+ND F++ +RHLLK I RR+P+ +     Q  G+ ++  +   +E+++RL  +K+ L A +V+L+ ++ + K  +  + +R+   +Q+Q  ++ FL +A+QNP F   L  + + M      ++KKR
Sbjct:   38 FLTKTFDLVADPATDGVVSWGRAGSSFVVWDPHVFAAVFLPRFFKHNNFSSFVRQLNTYGFRKIDPDRWEFANDGFLRGQRHLLKMIKRRRPLSYLPGSQQALGTCLEVGQFGLDEEIDRLKRDKNILLAEVVKLRHKQQSTKANMRAMEERLQHAEQKQVQMMGFLARAMQNPDFFHQLIHQQDKMKGLEDTFSKKR 235          
The following BLAST results are available for this feature:
BLAST of FC875389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
HFA4D_ORYSJ1.598e-5155.81Heat stress transcription factor A-4d OS=Oryza sat... [more]
HFA4C_ARATH1.598e-5153.71Heat stress transcription factor A-4c OS=Arabidops... [more]
HFA2B_ORYSJ3.936e-5048.65Heat stress transcription factor A-2b OS=Oryza sat... [more]
HFA2E_ORYSJ5.141e-5047.83Heat stress transcription factor A-2e OS=Oryza sat... [more]
HFA4B_ORYSJ2.821e-4849.18Heat stress transcription factor A-4b OS=Oryza sat... [more]
HSFA2_ARATH5.320e-4750.27Heat stress transcription factor A-2 OS=Arabidopsi... [more]
HSF30_SOLPE5.320e-4744.15Heat shock factor protein HSF30 OS=Solanum peruvia... [more]
HFA2C_ORYSJ1.548e-4646.73Heat stress transcription factor A-2c OS=Oryza sat... [more]
HFA6B_ARATH1.711e-4542.23Heat stress transcription factor A-6b OS=Arabidops... [more]
HFA2D_ORYSJ1.892e-4442.93Heat stress transcription factor A-2d OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC31403D06EF CTVClemen1 Citrus clementina cDNA clone C31403D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875389 ID=FC875389; Name=FC875389; organism=Citrus clementina; type=EST; length=682bp
GGTCTCTCGGACGCCAATTGACCCGAAAAATCAACGAGAATGGAGACATC
GGCGGCGTCAGGTGGCCCCGGCGGACTAGGAGGAGGGCCGGCGCCGTTTC
TTATAAAGACTTACGACATGGTTGACGATTCATCAACGGACGAGATCGTG
TCTTGGAGCGACAACAAAAACAGTTTTGTTGTTTGGAACCCACCTGAATT
CGCTCGTCTTCTGCTTCCAACTTATTTCAAGCATAACAATTTCTCTAGCT
TCATTCGACAGCTCAATACCTATGGATTCCGAAAAATTGATCCTGAGAAG
TGGGAATTTTCAAATGATGATTTTGTCAAGGATAAAAGGCATCTTCTTAA
GAATATCCACCGCAGGAAACCTATTCACAGCCACAGTCACCCTCAGACTC
AGGGTTCATCAGTGGATCCTGAGAGAGCAACATTTGAGGAACAAATGGAG
AGGCTTTCACATGAGAAATCTGCACTGGAGGCAAATATTGTAAGATTAAA
ACAGCAGCGGTCAACTGCAAAGCTTCAGTTAGAAGACCTTGCACAGCGAA
TTGATAGTATGGATCAGAGGCAGGAGAATTTGTTGACCTTCTTGCAAAAG
GCTGTTCAGAATCCTACTTTTGTTGATCATCTTGCCCGAAAAATTGAGTC
TATGGATATCTCAGCATACAATAAGAAACGAC
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