FC875389

Overview
NameFC875389
Unique NameFC875389
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3995 contig Ccv1_Contig3995:58..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSFC1_ARATH (Heat stress transcription factor C-1 OS=Arabidopsis thaliana GN=HSFC1 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.477e-36
Identity = 79/199 (39.70%), Postives = 120/199 (60.30%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHL----ARKIESMDISAYNKKR 681
            F++KTY MV+D STD +++W    NSF+V +P +F++ +LP YFKHNNFSSF+RQLNTYGFRK+DP++WEF+N+ F++ ++HLL NI RRK  H+           D E      ++ERL  E+  LEA I R+               +RI++ ++R E ++ FL K V++P  +  +     R  +   +S   K+R
Sbjct:   18 FIVKTYQMVNDPSTDWLITWGPAHNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEHFLRGQKHLLNNIARRK--HARGM-----YGQDLEDGEIVREIERLKEEQRELEAEIQRMN--------------RRIEATEKRPEQMMAFLYKVVEDPDLLPRMMLEKERTKQQQQVSDKKKRR 195          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFA6B_ORYSJ (Heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica GN=HSFA6B PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.739e-35
Identity = 75/182 (41.21%), Postives = 116/182 (63.74%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKN--SFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQG-SSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHL 633
            F+ KTY+MV D++TD +VSW    +  SFVVW+P   A  +LP +FKH NFSSF+RQLNTYGFRK+ P++WEF+N+ F+  ++HLLKNI RR+        Q +  +SV   +     ++  L  +++AL A ++ LKQQ +  K QL  + + + ++++RQ+  + F  K + NP FV  +
Sbjct:   94 FVAKTYEMVADAATDAVVSWGPGGSGASFVVWDPHALAAGVLPRFFKHANFSSFVRQLNTYGFRKVTPDRWEFANEAFLAGQKHLLKNIKRRRVSKPLVDSQLRNKASVVFGQPEAPGEVVSLKRDRAALRAEVIMLKQQYNACKSQLIAMEEMVRNIERRQQQTIGFFAKVLTNPAFVQQV 275          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSFB4_ARATH (Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.165e-34
Identity = 73/133 (54.89%), Postives = 89/133 (66.92%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRK----------PIHSHSH-----PQTQGS--SVDPERATFEEQ 444
            FL KTY +VDD +TD +VSW D+  +FVVW PPEFAR LLP YFKHNNFSSF+RQLNTYGFRKI P++WEF+N+ F + ++HLL  IHRRK          P  SH H     P + GS   + P R T  E+
Sbjct:   35 FLTKTYQLVDDPATDHVVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKRGEKHLLCEIHRRKTSQMIPQQHSPFMSHHHAPPQIPFSGGSFFPLPPPRVTTPEE 167          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFB4D_ORYSJ (Heat stress transcription factor B-4d OS=Oryza sativa subsp. japonica GN=HSFB4D PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.372e-33
Identity = 66/100 (66.00%), Postives = 79/100 (79.00%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQ 396
            FL KTY +VDD STD++VSW +++ +FVVW PPEFAR LLP YFKHNNFSSF+RQLNTYGFRKI  ++WEF+N+ F K  +HLL  IHRRK   S S PQ
Sbjct:   37 FLSKTYQLVDDPSTDDVVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLSEIHRRKS-SSCSQPQ 135          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFB4B_ORYSJ (Heat stress transcription factor B-4b OS=Oryza sativa subsp. japonica GN=HSFB4B PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.272e-32
Identity = 66/110 (60.00%), Postives = 76/110 (69.09%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRK------------PIHSHSH 390
            FL KTY +VDD  TD IVSW ++  +FVVW PPEFAR LLP YFKHNNFSSF+RQLNTYGFRKI  ++WEF+N+ F K  +HLL  IHRRK            P H H H
Sbjct:   35 FLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLAEIHRRKSSQPPPPPMPHQPYHHHHH 144          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFB4C_ORYSJ (Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica GN=HSFB4C PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.834e-32
Identity = 62/92 (67.39%), Postives = 76/92 (82.61%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNK-NSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRK 369
            FL KTY +VDD +TD IVSW D++ ++FVVW PPEFAR +LP YFKHNNFSSF+RQLNTYGFRK+ PE+WEF+N+ F K ++ LL  IHRRK
Sbjct:   25 FLTKTYQLVDDPATDHIVSWGDDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLTEIHRRK 116          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFB2B_ORYSJ (Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.077e-31
Identity = 60/91 (65.93%), Postives = 75/91 (82.42%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRK 369
            FL KTY +VDD + D+++SW+D+ ++FVVW P EFAR LLP YFKHNNFSSF+RQLNTYGFRKI P++WEF+ND F + +R LL  IHRRK
Sbjct:   49 FLTKTYQLVDDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGERRLLCEIHRRK 139          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSFB1_ARATH (Heat stress transcription factor B-1 OS=Arabidopsis thaliana GN=HSFB1 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.092e-31
Identity = 70/174 (40.23%), Postives = 100/174 (57.47%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHS--------HPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFL 594
            FL KTY +VDD STD++VSW++   +FVVW   EFA+ LLP YFKHNNFSSFIRQLNTYGFRK  P+KWEF+ND F +    LL +I RRK + + +         P    S    +  +        S    ++E  +  L  +    K +  +L+  + +  ++++ L+TFL
Sbjct:   15 FLSKTYQLVDDHSTDDVVSWNEEGTAFVVWKTAEFAKDLLPQYFKHNNFSSFIRQLNTYGFRKTVPDKWEFANDYFRRGGEDLLTDIRRRKSVIASTAGKCVVVGSPSESNSGGGDDHGSSSTSSPGSSKNPGSVENMVADLSGENEKLKRENNNLSSELAAAKKQRDELVTFL 188          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFC2B_ORYSJ (Heat stress transcription factor C-2b OS=Oryza sativa subsp. japonica GN=HSFC2B PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.191e-30
Identity = 70/175 (40.00%), Postives = 107/175 (61.14%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHS-----HSHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAV 606
            F+ KTY MV+D  TD ++ W    NSFVV +P  F++ LLP +FKHNNFSSF+RQLNTYGFRK+DP++WEF++  F++ + HLL+NI RR    +         + + +S D      +E M  ++ E       +VRLKQ++ T   ++  + +R+   ++R + +L FL K V
Sbjct:   12 FVWKTYRMVEDPGTDGVIGWGKGNNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVDPDRWEFAHASFLRGQTHLLRNIVRRGSAAAGGGGGGGGGKRRDASADGGGGGGDEDMTMVATE-------VVRLKQEQRTIDDRVAAMWRRVQETERRPKQMLAFLLKVV 179          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFB4A_ORYSJ (Putative heat stress transcription factor B-4a OS=Oryza sativa subsp. japonica GN=HSFB4A PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.191e-30
Identity = 61/96 (63.54%), Postives = 75/96 (78.12%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNK-----NSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRK 369
            FL KTY +VDD +TD +VSW D+      +SFVVW PPEFAR +LP YFKH+NFSSF+RQLNTYGFRK+ PE+WEF+N+ F K ++ LL  IHRRK
Sbjct:   26 FLTKTYQLVDDPATDHVVSWEDDDGGESASSFVVWRPPEFARDILPNYFKHSNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLCEIHRRK 121          
The following BLAST results are available for this feature:
BLAST of FC875389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
HSFC1_ARATH2.477e-3639.70Heat stress transcription factor C-1 OS=Arabidopsi... [more]
HFA6B_ORYSJ2.739e-3541.21Heat stress transcription factor A-6a OS=Oryza sat... [more]
HSFB4_ARATH5.165e-3454.89Heat stress transcription factor B-4 OS=Arabidopsi... [more]
HFB4D_ORYSJ4.372e-3366.00Heat stress transcription factor B-4d OS=Oryza sat... [more]
HFB4B_ORYSJ1.272e-3260.00Heat stress transcription factor B-4b OS=Oryza sat... [more]
HFB4C_ORYSJ4.834e-3267.39Heat stress transcription factor B-4c OS=Oryza sat... [more]
HFB2B_ORYSJ1.077e-3165.93Heat stress transcription factor B-2b OS=Oryza sat... [more]
HSFB1_ARATH4.092e-3140.23Heat stress transcription factor B-1 OS=Arabidopsi... [more]
HFC2B_ORYSJ1.191e-3040.00Heat stress transcription factor C-2b OS=Oryza sat... [more]
HFB4A_ORYSJ1.191e-3063.54Putative heat stress transcription factor B-4a OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31403D06EF CTVClemen1 Citrus clementina cDNA clone C31403D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875389 ID=FC875389; Name=FC875389; organism=Citrus clementina; type=EST; length=682bp
GGTCTCTCGGACGCCAATTGACCCGAAAAATCAACGAGAATGGAGACATC
GGCGGCGTCAGGTGGCCCCGGCGGACTAGGAGGAGGGCCGGCGCCGTTTC
TTATAAAGACTTACGACATGGTTGACGATTCATCAACGGACGAGATCGTG
TCTTGGAGCGACAACAAAAACAGTTTTGTTGTTTGGAACCCACCTGAATT
CGCTCGTCTTCTGCTTCCAACTTATTTCAAGCATAACAATTTCTCTAGCT
TCATTCGACAGCTCAATACCTATGGATTCCGAAAAATTGATCCTGAGAAG
TGGGAATTTTCAAATGATGATTTTGTCAAGGATAAAAGGCATCTTCTTAA
GAATATCCACCGCAGGAAACCTATTCACAGCCACAGTCACCCTCAGACTC
AGGGTTCATCAGTGGATCCTGAGAGAGCAACATTTGAGGAACAAATGGAG
AGGCTTTCACATGAGAAATCTGCACTGGAGGCAAATATTGTAAGATTAAA
ACAGCAGCGGTCAACTGCAAAGCTTCAGTTAGAAGACCTTGCACAGCGAA
TTGATAGTATGGATCAGAGGCAGGAGAATTTGTTGACCTTCTTGCAAAAG
GCTGTTCAGAATCCTACTTTTGTTGATCATCTTGCCCGAAAAATTGAGTC
TATGGATATCTCAGCATACAATAAGAAACGAC
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