FC875389

Overview
NameFC875389
Unique NameFC875389
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3995 contig Ccv1_Contig3995:58..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFB2C_ORYSJ (Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.191e-30
Identity = 57/93 (61.29%), Postives = 77/93 (82.80%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPI 375
            FL KTY +V+D + D+++SW+++ ++FVVW P EFAR LLP YFKHNNFSSF+RQLNTYGFRKI P++WEF+ND F + ++ LL +IHRRK +
Sbjct:   39 FLTKTYQLVEDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGEKRLLCDIHRRKVV 131          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFB2A_ARATH (Heat stress transcription factor B-2a OS=Arabidopsis thaliana GN=HSFB2A PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.555e-30
Identity = 55/96 (57.29%), Postives = 80/96 (83.33%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSH 384
            FL KT+++V+DSS D+++SW+++ +SF+VWNP +FA+ LLP +FKHNNFSSF+RQLNTYGF+K+ P++WEFSND F + ++ LL+ I RRK   +H
Sbjct:   24 FLTKTFNLVEDSSIDDVISWNEDGSSFIVWNPTDFAKDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDFFKRGEKRLLREIQRRKITTTH 119          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFC1A_ORYSJ (Heat stress transcription factor C-1a OS=Oryza sativa subsp. japonica GN=HSFC1A PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.653e-30
Identity = 69/192 (35.94%), Postives = 110/192 (57.29%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPI----------------HSHSHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFV 624
            F+ KTY MV D  TD +V W  + NSFVV +P  F++LLLP +FKH NFSSF+RQLNTYGFRK+ P++WEF+++ F++ + HLL  I RRK                   +  H     ++        E+  E +  +++AL   + RL+ +++    +L  ++QR+ + ++R + L++FL K   +P  V
Sbjct:   27 FVAKTYQMVCDPRTDALVRWGRDNNSFVVVDPAAFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDRWEFAHESFLRGQTHLLPRIVRRKKRGEGGGGGGGASCSFGGGAGEHQVAAAAASVGMSGEEEDAAEDVLAKEAALFEEVQRLRHEQTAIGEELARMSQRLQATERRPDQLMSFLAKLADDPNAV 218          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.464e-30
Identity = 57/95 (60.00%), Postives = 77/95 (81.05%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHS 381
            FL+KTY +VDD++TD+++SW++   +FVVW   EFA+ LLP YFKHNNFSSF+RQLNTYGFRKI P+KWEF+N++F + ++ LL  I RRK + S
Sbjct:   10 FLLKTYQLVDDAATDDVISWNEIGTTFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGQKELLTAIRRRKTVTS 104          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFC2A_ORYSJ (Heat stress transcription factor C-2a OS=Oryza sativa subsp. japonica GN=HSFC2A PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.718e-30
Identity = 64/179 (35.75%), Postives = 108/179 (60.34%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHL 633
            F+ KTY MVDD +TD +++W  + NSFVV +P  F++ LLP +FKH+NFSSF+RQLNTYGFRK+DP++WEF++  F++ + HLL+ I RR      +  + +           E     +  E + +   + RL++++   + ++  + +R+   ++R + +L FL K V +P  +  L
Sbjct:   15 FVAKTYRMVDDPATDGVIAWGRDSNSFVVADPFAFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDRWEFAHVSFLRGQTHLLRRIVRRSSGGGGAKRKEEAGGCG---GGGEAAAGDVDEESAVVALEVARLRREQREIEGRVAAMWRRVQETERRPKQMLAFLVKVVGDPQVLRRL 190          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFB2B_ARATH (Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.316e-29
Identity = 56/91 (61.54%), Postives = 74/91 (81.32%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRK 369
            FL KTY +V+D   DE++SW+++  +F+VW P EFAR LLP YFKHNNFSSF+RQLNTYGFRK+ P++WEFSND F + ++ LL++I RRK
Sbjct:   60 FLTKTYQLVEDPVYDELISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFKRGEKILLRDIQRRK 150          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFB2A_ORYSJ (Heat stress transcription factor B-2a OS=Oryza sativa subsp. japonica GN=HSFB2A PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.933e-29
Identity = 57/91 (62.64%), Postives = 73/91 (80.22%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRK 369
            FL KTY MV+D STDE +SW+D+  +FVVW P EFAR LLP +FKH+NFSSF+RQLNTYGF+K+  ++WEF+ND F + ++HLL  I RRK
Sbjct:   11 FLTKTYAMVEDPSTDETISWNDSGTAFVVWRPAEFARDLLPKHFKHSNFSSFVRQLNTYGFKKVVADRWEFANDCFRRGEKHLLGGIQRRK 101          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSFB3_ARATH (Heat stress transcription factor B-3 OS=Arabidopsis thaliana GN=HSFB3 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.114e-28
Identity = 60/103 (58.25%), Postives = 75/103 (72.82%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIH-SHSHPQTQ 402
            FL+KTY +V+D +TD ++SW++    FVVW P EFAR LLPT FKH NFSSF+RQLNTYGFRK+   +WEFSN+ F K +R L+ NI RRK  H SH+    Q
Sbjct:   41 FLVKTYKVVEDPTTDGVISWNEYGTGFVVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVTTIRWEFSNEMFRKGQRELMSNIRRRKSQHWSHNKSNHQ 143          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSFB1_ORYSJ (Heat stress transcription factor B-1 OS=Oryza sativa subsp. japonica GN=HSFB1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.224e-28
Identity = 63/126 (50.00%), Postives = 81/126 (64.29%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERATFEEQMERLSHEKSA 474
            FL KT  MV++S+TDE++SW     SFVVW P EFAR LLP +FKH NFSSF+RQLNTYGFRK+ P++WEF+N +F + ++ LL  I RRK     + PQ+  S        F   +  L  E SA
Sbjct:   31 FLTKTNQMVEESATDEVISWGKEGRSFVVWKPVEFARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDRWEFANGNFRRGEQGLLSGIRRRKA----TTPQSSKSCGSGVNVAFPPPLPPLPPEPSA 152          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HFC1B_ORYSJ (Heat stress transcription factor C-1b OS=Oryza sativa subsp. japonica GN=HSFC1B PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.232e-27
Identity = 65/176 (36.93%), Postives = 104/176 (59.09%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFV 624
            F+ KT+ MV D ST+ +V W    N+F+V +P  F+  LLP+YFKH NF+SF+RQLNTYGFRK+DP++WEF+++ F++ +  LL  I R+K          +G +    R   EE  E     +  +EA + RL++++   + +L+ + QR+ + + R   ++ FL K    P  V
Sbjct:   25 FVAKTFHMVSDPSTNAVVRWGGAGNTFLVLDPAAFSDFLLPSYFKHRNFASFVRQLNTYGFRKVDPDRWEFAHESFLRGQAQLLPRIVRKK---------KKGGAAPGCRELCEEGEE----VRGTIEA-VQRLREEQRGMEEELQAMDQRLRAAESRPGQMMAFLAKLADEPGVV 186          
The following BLAST results are available for this feature:
BLAST of FC875389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
HFB2C_ORYSJ1.191e-3061.29Heat stress transcription factor B-2c OS=Oryza sat... [more]
HFB2A_ARATH1.555e-3057.29Heat stress transcription factor B-2a OS=Arabidops... [more]
HFC1A_ORYSJ2.653e-3035.94Heat stress transcription factor C-1a OS=Oryza sat... [more]
HSF24_SOLPE3.464e-3060.00Heat shock factor protein HSF24 OS=Solanum peruvia... [more]
HFC2A_ORYSJ7.718e-3035.75Heat stress transcription factor C-2a OS=Oryza sat... [more]
HFB2B_ARATH1.316e-2961.54Heat stress transcription factor B-2b OS=Arabidops... [more]
HFB2A_ORYSJ2.933e-2962.64Heat stress transcription factor B-2a OS=Oryza sat... [more]
HSFB3_ARATH1.114e-2858.25Heat stress transcription factor B-3 OS=Arabidopsi... [more]
HSFB1_ORYSJ7.224e-2850.00Heat stress transcription factor B-1 OS=Oryza sati... [more]
HFC1B_ORYSJ1.232e-2736.93Heat stress transcription factor C-1b OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC31403D06EF CTVClemen1 Citrus clementina cDNA clone C31403D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875389 ID=FC875389; Name=FC875389; organism=Citrus clementina; type=EST; length=682bp
GGTCTCTCGGACGCCAATTGACCCGAAAAATCAACGAGAATGGAGACATC
GGCGGCGTCAGGTGGCCCCGGCGGACTAGGAGGAGGGCCGGCGCCGTTTC
TTATAAAGACTTACGACATGGTTGACGATTCATCAACGGACGAGATCGTG
TCTTGGAGCGACAACAAAAACAGTTTTGTTGTTTGGAACCCACCTGAATT
CGCTCGTCTTCTGCTTCCAACTTATTTCAAGCATAACAATTTCTCTAGCT
TCATTCGACAGCTCAATACCTATGGATTCCGAAAAATTGATCCTGAGAAG
TGGGAATTTTCAAATGATGATTTTGTCAAGGATAAAAGGCATCTTCTTAA
GAATATCCACCGCAGGAAACCTATTCACAGCCACAGTCACCCTCAGACTC
AGGGTTCATCAGTGGATCCTGAGAGAGCAACATTTGAGGAACAAATGGAG
AGGCTTTCACATGAGAAATCTGCACTGGAGGCAAATATTGTAAGATTAAA
ACAGCAGCGGTCAACTGCAAAGCTTCAGTTAGAAGACCTTGCACAGCGAA
TTGATAGTATGGATCAGAGGCAGGAGAATTTGTTGACCTTCTTGCAAAAG
GCTGTTCAGAATCCTACTTTTGTTGATCATCTTGCCCGAAAAATTGAGTC
TATGGATATCTCAGCATACAATAAGAAACGAC
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