FC875389

Overview
NameFC875389
Unique NameFC875389
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSF_SCHPO (Heat shock factor protein OS=Schizosaccharomyces pombe GN=hsf1 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 60/153 (39.22%), Postives = 86/153 (56.21%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKI------------DPEKWEFSNDDFVKDKRHLLKNIHRRK----PIHSHSHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQ 507
            F  K Y+MV+DSSTD ++ WSD  +SF+V    +FA+L+LP YFKHNNFSSF+RQLN YGF K+              E  EF+N +F +D+  LL  + R+K    P+   S+     S++  E      Q   LS+E S ++ +   L Q+
Sbjct:   53 FSNKLYNMVNDSSTDSLIRWSDRGDSFLVIGHEDFAKLVLPRYFKHNNFSSFVRQLNMYGFHKVPHIQQGVLQSDSPNELLEFANPNFQRDQPELLCLVTRKKAGSQPV-EESNTSLDMSTISSELQNIRIQQMNLSNELSRIQVDNAALWQE 204          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSF1_CHICK (Heat shock factor protein 1 OS=Gallus gallus GN=HSF1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.553e-21
Identity = 62/198 (31.31%), Postives = 107/198 (54.04%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRK---------IDPEK--WEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERAT-FEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARKIESM 654
            FL K + +V+D  TD ++ WS + NSF V++  +FA+ +LP YFKHNN +SF+RQLN YGFRK         + PEK   EF +  F++ + HLL+NI R+  + S S  + +   V  +  T     ++ +  ++ ++++ ++ +K +      ++  L Q+     +    L+ FL   VQ+   +  + RKI  M
Sbjct:   23 FLTKLWTLVEDPETDPLICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPEKDDTEFQHPYFIRGQEHLLENIKRK--VTSVSSIKNEDIKVRQDNVTKLLTDIQVMKGKQESMDSKLIAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLVQSNRILG-VKRKIPLM 217          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: PRR1_SCHPO (Transcription factor prr1 OS=Schizosaccharomyces pombe GN=prr1 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 54/176 (30.68%), Postives = 95/176 (53.98%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEK----------WEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFL 594
            F+ K ++M+++     I+ WSD+ +SF+V +  EF + +LP +FKH+NF+SF+RQLN Y F K+  E+          WEF +DDF    + LL NI R+ P    S       +  P     ++Q++ +   +  L+ N+  L     T  L++ +L + I+S D    +++++L
Sbjct:   10 FVRKLFNMLEEPEYRHILRWSDSGDSFIVLDTNEFTKTILPRHFKHSNFASFVRQLNKYDFHKVRHEEGAPSIYGEGAWEFRHDDFQLHHKDLLDNIKRKAP----SKRNLANENTAPVIENLKQQVDSILDFQKLLDRNLSGLATSYQTILLKMFELKRGIESRDLLMSSIISYL 181          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSF_XENLA (Heat shock factor protein OS=Xenopus laevis GN=hsf1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.005e-19
Identity = 58/198 (29.29%), Postives = 104/198 (52.53%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRK---------IDPEK--WEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPER-ATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARKIESM 654
            FL K + +V+D  TD ++ WS   NSF V++  +FA+ +LP YFKHNN +SF+RQLN YGFRK         + PE+   EF +  F++ +  LL+NI R+  +++ S  ++    V  +        ++ +  ++ +++  ++ +K +      ++  L Q+     +    L+ FL   VQ+   +  + RKI  M
Sbjct:   15 FLAKLWTLVEDPDTDPLICWSPEGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPYFIRGQEQLLENIKRK--VNTMSATKSDEVKVRQDSVGKLISDVQSMKGKQESIDGRLLSMKHENEALWREVASLRQKHTQQQKVVNKLIQFLVSLVQSNRILG-VKRKIPLM 209          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSF_KLULA (Heat shock factor protein OS=Kluyveromyces lactis GN=HSF PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.005e-19
Identity = 54/177 (30.51%), Postives = 95/177 (53.67%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKI-----------DPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFL 594
            F+ K + MV+D S ++ + WS +  S VV N   F + +LP YFKH+NF+SF+RQLN YG+ K+           +  +WEF N++F + K +LL+NI R+K   S+++     ++ + +      ++E + + + A+  ++ R+ +       +     +R  S  Q  E LL FL
Sbjct:  197 FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENENFKRGKEYLLENIVRQK---SNTNILGGTTNAEVDIHILLNELETVKYNQLAIAEDLKRITKDNEMLWKENMMARERHQSQQQVLEKLLRFL 370          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSF1_MOUSE (Heat shock factor protein 1 OS=Mus musculus GN=Hsf1 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 59/198 (29.80%), Postives = 105/198 (53.03%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRK---------IDPEK--WEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERAT-FEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARKIESM 654
            FL K + +V D  TD ++ WS + NSF V++  +FA+ +LP YFKHNN +SF+RQLN YGFRK         + PE+   EF +  F++ +  LL+NI R+  + S S  +++   +  +  T     ++ +  ++  +++ ++ +K +      ++  L Q+     +    L+ FL   VQ+   +  + RKI  M
Sbjct:   18 FLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK--VTSVSTLKSEDIKIRQDSVTRLLTDVQLMKGKQECMDSKLLAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLVQSNRILG-VKRKIPLM 212          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSF1_HUMAN (Heat shock factor protein 1 OS=Homo sapiens GN=HSF1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 59/198 (29.80%), Postives = 105/198 (53.03%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRK---------IDPEK--WEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERAT-FEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARKIESM 654
            FL K + +V D  TD ++ WS + NSF V++  +FA+ +LP YFKHNN +SF+RQLN YGFRK         + PE+   EF +  F++ +  LL+NI R+  + S S  +++   +  +  T     ++ +  ++  +++ ++ +K +      ++  L Q+     +    L+ FL   VQ+   +  + RKI  M
Sbjct:   18 FLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK--VTSVSTLKSEDIKIRQDSVTKLLTDVQLMKGKQECMDSKLLAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLVQSNRILG-VKRKIPLM 212          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSF_YEAST (Heat shock factor protein OS=Saccharomyces cerevisiae GN=HSF1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18
Identity = 42/116 (36.21%), Postives = 72/116 (62.07%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKI-----------DPEKWEFSNDDFVKDKRHLLKNIHRRK-PIHSHSHPQTQGS 408
            F+ K + M++D S  +++ W+++  SF+V N  EF   +LP YFKH+NF+SF+RQLN YG+ K+             +KW+F N++F++ +  LL+ I R+K   ++H+ P   G+
Sbjct:  175 FVNKLWSMLNDDSNTKLIQWAEDGKSFIVTNREEFVHQILPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSIQSSSDDKWQFENENFIRGREDLLEKIIRQKGSSNNHNSPSGNGN 290          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSF_DROME (Heat shock factor protein OS=Drosophila melanogaster GN=Hsf PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 57/196 (29.08%), Postives = 97/196 (49.49%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKI----------DPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARKIESM 654
            FL K + +VDD+ T+ ++ W+ +  SFV+ N  +FA+ LLP  +KHNN +SFIRQLN YGF KI          D ++ EFS+  F ++   LL  I R+  I ++ +   +G       +     ++ +   +  L++    +KQ+      ++  L Q+     Q    L+ FL   VQ    +  + R ++ M
Sbjct:   49 FLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK--ISNNKNGDDKGVLKPEAMSKILTDVKVMRGRQDNLDSRFSAMKQENEVLWREIASLRQKHAKQQQIVNKLIQFLITIVQPSRNMSGVKRHVQLM 242          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSF1_BOVIN (Heat shock factor protein 1 OS=Bos taurus GN=HSF1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 58/198 (29.29%), Postives = 105/198 (53.03%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRK---------IDPEK--WEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERAT-FEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARKIESM 654
            FL K + +V D  TD ++ WS + NSF V +  +FA+ +LP YFKH+N +SF+RQLN YGFRK         + PE+   EF +  F++ +  LL+NI R+  + S S  +++   +  +  T     ++ +  ++ ++++ ++ +K +      ++  L Q+     +    L+ FL   VQ+   +  + RKI  M
Sbjct:   18 FLTKLWTLVSDPDTDALICWSPSGNSFHVLDQGQFAKEVLPKYFKHSNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK--VTSVSTLRSEDIKIRQDSVTKLLTDVQLMKGKQESMDSKLLAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLVQSNRILG-VKRKIPLM 212          
The following BLAST results are available for this feature:
BLAST of FC875389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
HSF_SCHPO3.839e-2139.22Heat shock factor protein OS=Schizosaccharomyces p... [more]
HSF1_CHICK8.553e-2131.31Heat shock factor protein 1 OS=Gallus gallus GN=HS... [more]
PRR1_SCHPO3.250e-2030.68Transcription factor prr1 OS=Schizosaccharomyces p... [more]
HSF_XENLA8.005e-1929.29Heat shock factor protein OS=Xenopus laevis GN=hsf... [more]
HSF_KLULA8.005e-1930.51Heat shock factor protein OS=Kluyveromyces lactis ... [more]
HSF1_MOUSE1.366e-1829.80Heat shock factor protein 1 OS=Mus musculus GN=Hsf... [more]
HSF1_HUMAN1.366e-1829.80Heat shock factor protein 1 OS=Homo sapiens GN=HSF... [more]
HSF_YEAST1.783e-1836.21Heat shock factor protein OS=Saccharomyces cerevis... [more]
HSF_DROME8.851e-1829.08Heat shock factor protein OS=Drosophila melanogast... [more]
HSF1_BOVIN8.851e-1829.29Heat shock factor protein 1 OS=Bos taurus GN=HSF1 ... [more]

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Properties
Property NameValue
Genbank descriptionC31403D06EF CTVClemen1 Citrus clementina cDNA clone C31403D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875389 ID=FC875389; Name=FC875389; organism=Citrus clementina; type=EST; length=682bp
GGTCTCTCGGACGCCAATTGACCCGAAAAATCAACGAGAATGGAGACATC
GGCGGCGTCAGGTGGCCCCGGCGGACTAGGAGGAGGGCCGGCGCCGTTTC
TTATAAAGACTTACGACATGGTTGACGATTCATCAACGGACGAGATCGTG
TCTTGGAGCGACAACAAAAACAGTTTTGTTGTTTGGAACCCACCTGAATT
CGCTCGTCTTCTGCTTCCAACTTATTTCAAGCATAACAATTTCTCTAGCT
TCATTCGACAGCTCAATACCTATGGATTCCGAAAAATTGATCCTGAGAAG
TGGGAATTTTCAAATGATGATTTTGTCAAGGATAAAAGGCATCTTCTTAA
GAATATCCACCGCAGGAAACCTATTCACAGCCACAGTCACCCTCAGACTC
AGGGTTCATCAGTGGATCCTGAGAGAGCAACATTTGAGGAACAAATGGAG
AGGCTTTCACATGAGAAATCTGCACTGGAGGCAAATATTGTAAGATTAAA
ACAGCAGCGGTCAACTGCAAAGCTTCAGTTAGAAGACCTTGCACAGCGAA
TTGATAGTATGGATCAGAGGCAGGAGAATTTGTTGACCTTCTTGCAAAAG
GCTGTTCAGAATCCTACTTTTGTTGATCATCTTGCCCGAAAAATTGAGTC
TATGGATATCTCAGCATACAATAAGAAACGAC
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