FC875389

Overview
NameFC875389
Unique NameFC875389
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3995 contig Ccv1_Contig3995:58..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSF2_MOUSE (Heat shock factor protein 2 OS=Mus musculus GN=Hsf2 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 59/193 (30.57%), Postives = 99/193 (51.30%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRK--------IDPEK---WEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARK 642
            FL K + +V+++ T+E ++WS N  SF+V +   FA+ +LP YFKHNN +SF+RQLN YGFRK        I  E+    EF +  F + +  LL+NI R+    S S P+ +      +        +++  ++  +E+ +  LK +  +   ++ +L  +     Q    ++ F+   VQN   V  L RK
Sbjct:   10 FLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIESGIIKQERDGPVEFQHPYFKQGQDDLLENIKRKV---SSSKPE-ENKIRQEDLTKIISSAQKVQIKQETIESRLSELKSENESLWKEVSELRAKHAQQQQVIRKIVQFIVTLVQNNQLVS-LKRK 197          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSF2_HUMAN (Heat shock factor protein 2 OS=Homo sapiens GN=HSF2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17
Identity = 57/193 (29.53%), Postives = 97/193 (50.26%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKI-----------DPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARK 642
            FL K + +V+++ T+E ++WS N  SF+V +   FA+ +LP YFKHNN +SF+RQLN YGFRK+                EF +  F + +  LL+NI R+    S S P+ +      +        +++  ++  +E+ +  LK +  +   ++ +L  +     Q    ++ F+   VQN   V  L RK
Sbjct:   10 FLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIDSGIVKQERDGPVEFQHPYFKQGQDDLLENIKRKV---SSSKPE-ENKIRQEDLTKIISSAQKVQIKQETIESRLSELKSENESLWKEVSELRAKHAQQQQVIRKIVQFIVTLVQNNQLVS-LKRK 197          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSF3_CHICK (Heat shock factor protein 3 OS=Gallus gallus GN=HSF3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.493e-17
Identity = 55/178 (30.90%), Postives = 91/178 (51.12%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRK--------IDPEK---WEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERA-TFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFL 594
            FL K + +V+D  +D+++ WS N  +F + +   FA+ LLP YFKHNN SSFIRQLN YGFRK        I  EK    EF +  F +   HLL+NI R+      S  +T+   V  E       +++ +  +++ ++  +  +K++      ++  L Q+     +    +L F+
Sbjct:   19 FLAKLWALVEDPQSDDVICWSRNGENFCILDEQRFAKELLPKYFKHNNISSFIRQLNMYGFRKVVALENGMITAEKNSVIEFQHPFFKQGNAHLLENIKRKV-----SAVRTEDLKVCAEDLHKVLSEVQEMREQQNNMDIRLANMKRENKALWKEVAVLRQKHSQQQKLLSKILQFI 191          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSF2_CHICK (Heat shock factor protein 2 OS=Gallus gallus GN=HSF2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.719e-16
Identity = 55/193 (28.50%), Postives = 100/193 (51.81%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKI-----------DPEKWEFSNDDFVKDKRHLLKNIHRRKPIHSHSHPQTQGSSVDPERATFEEQMERLSHEKSALEANIVRLKQQRSTAKLQLEDLAQRIDSMDQRQENLLTFLQKAVQNPTFVDHLARK 642
            FL K + +V ++ ++++++WS N  SF+V +   FA+ +LP YFKHNN +SF+RQLN YGFRK+                EF +  F + +  LL++I R+    S S P+    S + + +      +++  ++  +E+ +  LK++  +   ++ +L  +     Q    ++ F+   VQN   V  L RK
Sbjct:   24 FLSKLWALVGEAPSNQLITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHVDSGIVKLERDGLVEFQHPYFKQGREDLLEHIKRKV---SSSRPEENKISQE-DLSKIISSAQKVEIKQETIESRLSALKRENESLWREVAELRAKHLKQQQVIRKIVQFIVTLVQNNQLVS-LKRK 211          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSF4_MOUSE (Heat shock factor protein 4 OS=Mus musculus GN=Hsf4 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.284e-16
Identity = 50/160 (31.25%), Postives = 81/160 (50.62%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKI-----------DPEKWEFSNDDFVKDKRHLLKNIHRRKPI----HSHSHPQTQGSSVDPERA------TFEEQMERLSHEKSALEANIVRLKQQRS 513
            FL K + +V D  TD ++ WS +  SF+V +   FA+ +LP YFKH+N +SF+RQLN YGFRK+           + +  EF +  FV+ +  LL+ + R+ P      S   P+     +   +A      + E +++ L  +   L   +V L+Q  S
Sbjct:   20 FLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRKVPALRGDDSRWRPEDLSRLLGEVQALRGVQESTEARLQELRQQNEILWREVVTLRQSHS 179          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSF4_HUMAN (Heat shock factor protein 4 OS=Homo sapiens GN=HSF4 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.410e-15
Identity = 49/157 (31.21%), Postives = 79/157 (50.32%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKI-----------DPEKWEFSNDDFVKDKRHLLKNIHRRKPI----HSHSHPQTQGSSVDPERA------TFEEQMERLSHEKSALEANIVRLKQ 504
            FL K + +V D  TD ++ WS +  SF+V +   FA+ +LP YFKH+N +SF+RQLN YGFRK+           + +  EF +  FV+ +  LL+ + R+ P          P+  G  +   +A      + E ++  L  +   L   +V L+Q
Sbjct:   21 FLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRKVPALRGDDGRWRPEDLGRLLGEVQALRGVQESTEARLRELRQQNEILWREVVTLRQ 177          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: HSF4_CANFA (Heat shock factor protein 4 OS=Canis familiaris GN=HSF4 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.148e-15
Identity = 40/103 (38.83%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKI-----------DPEKWEFSNDDFVKDKRHLLKNIHRRKP 372
            FL K + +V D  TD ++ WS +  SF+V +   FA+ +LP YFKH+N +SF+RQLN YGFRK+           + +  EF +  FV+ +  LL+ + R+ P
Sbjct:   20 FLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRKVP 122          
BLAST of FC875389 vs. ExPASy Swiss-Prot
Match: SKN7_YEAST (Transcription factor SKN7 OS=Saccharomyces cerevisiae GN=SKN7 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.258e-12
Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = 1
Query:   97 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKI--DPEK----------WEFSNDDFVKDKRHLLKNIHRRKP 372
            F+ K + +++++   +IV+W++N  SFVV +  +F   +LP +FKH+NF+SF+RQLN Y F K+   PE+          WEF + +F       L NI R+ P
Sbjct:   87 FVRKLFRILENNEYPDIVTWTENGKSFVVLDTGKFTTHILPNHFKHSNFASFVRQLNKYDFHKVKRSPEERQRCKYGEQSWEFQHPEFRVHYGKGLDNIKRKIP 190          
The following BLAST results are available for this feature:
BLAST of FC875389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
HSF2_MOUSE1.972e-1730.57Heat shock factor protein 2 OS=Mus musculus GN=Hsf... [more]
HSF2_HUMAN2.575e-1729.53Heat shock factor protein 2 OS=Homo sapiens GN=HSF... [more]
HSF3_CHICK7.493e-1730.90Heat shock factor protein 3 OS=Gallus gallus GN=HS... [more]
HSF2_CHICK3.719e-1628.50Heat shock factor protein 2 OS=Gallus gallus GN=HS... [more]
HSF4_MOUSE8.284e-1631.25Heat shock factor protein 4 OS=Mus musculus GN=Hsf... [more]
HSF4_HUMAN2.410e-1531.21Heat shock factor protein 4 OS=Homo sapiens GN=HSF... [more]
HSF4_CANFA3.148e-1538.83Heat shock factor protein 4 OS=Canis familiaris GN... [more]
SKN7_YEAST3.258e-1236.54Transcription factor SKN7 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC31403D06EF CTVClemen1 Citrus clementina cDNA clone C31403D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875389 ID=FC875389; Name=FC875389; organism=Citrus clementina; type=EST; length=682bp
GGTCTCTCGGACGCCAATTGACCCGAAAAATCAACGAGAATGGAGACATC
GGCGGCGTCAGGTGGCCCCGGCGGACTAGGAGGAGGGCCGGCGCCGTTTC
TTATAAAGACTTACGACATGGTTGACGATTCATCAACGGACGAGATCGTG
TCTTGGAGCGACAACAAAAACAGTTTTGTTGTTTGGAACCCACCTGAATT
CGCTCGTCTTCTGCTTCCAACTTATTTCAAGCATAACAATTTCTCTAGCT
TCATTCGACAGCTCAATACCTATGGATTCCGAAAAATTGATCCTGAGAAG
TGGGAATTTTCAAATGATGATTTTGTCAAGGATAAAAGGCATCTTCTTAA
GAATATCCACCGCAGGAAACCTATTCACAGCCACAGTCACCCTCAGACTC
AGGGTTCATCAGTGGATCCTGAGAGAGCAACATTTGAGGAACAAATGGAG
AGGCTTTCACATGAGAAATCTGCACTGGAGGCAAATATTGTAAGATTAAA
ACAGCAGCGGTCAACTGCAAAGCTTCAGTTAGAAGACCTTGCACAGCGAA
TTGATAGTATGGATCAGAGGCAGGAGAATTTGTTGACCTTCTTGCAAAAG
GCTGTTCAGAATCCTACTTTTGTTGATCATCTTGCCCGAAAAATTGAGTC
TATGGATATCTCAGCATACAATAAGAAACGAC
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