FC875390

Overview
NameFC875390
Unique NameFC875390
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10220 contig Ccv1_Contig10220:1..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GT1_PONPY (Beta-1,3-galactosyltransferase 1 OS=Pongo pygmaeus GN=B3GALT1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.596e-16
Identity = 54/180 (30.00%), Postives = 90/180 (50.00%), Query Frame = 3
Query:  138 EALRSYPLSLHKPVDLFIGVFSTANN-FKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTL-AICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLY--GLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYV 665
            E L + P    K +   + + ST +  F  R A+R TW      +   +A  F +G + + ++N  +  E++ + DI +  F+D Y+ +T KTL  +    T    AK+VMKTD D FV +D ++  L + +      Y  G +     P R+  SKWY+  + +P+  YPP+  G GY+
Sbjct:   64 EFLINEPNKCEKNIPFLVILISTTHKEFDARQAIRETWGDENNFKGIKIATLFLLGKNADPVLNQMVEQESQIFHDIIVEDFIDSYHNLTLKTLMGMRWVATFCSKAKYVMKTDSDIFVNMDNLIYKLLKPSTKPRRRYFTGYV-INGGPIRDVRSKWYMPRDLYPDSNYPPFCSGTGYI 242          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GT1_PANTR (Beta-1,3-galactosyltransferase 1 OS=Pan troglodytes GN=B3GALT1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.596e-16
Identity = 54/180 (30.00%), Postives = 90/180 (50.00%), Query Frame = 3
Query:  138 EALRSYPLSLHKPVDLFIGVFSTANN-FKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTL-AICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLY--GLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYV 665
            E L + P    K +   + + ST +  F  R A+R TW      +   +A  F +G + + ++N  +  E++ + DI +  F+D Y+ +T KTL  +    T    AK+VMKTD D FV +D ++  L + +      Y  G +     P R+  SKWY+  + +P+  YPP+  G GY+
Sbjct:   64 EFLINEPNKCEKNIPFLVILISTTHKEFDARQAIRETWGDENNFKGIKIATLFLLGKNADPVLNQMVEQESQIFHDIIVEDFIDSYHNLTLKTLMGMRWVATFCSKAKYVMKTDSDIFVNMDNLIYKLLKPSTKPRRRYFTGYV-INGGPIRDVRSKWYMPRDLYPDSNYPPFCSGTGYI 242          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GT1_PANPA (Beta-1,3-galactosyltransferase 1 OS=Pan paniscus GN=B3GALT1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.596e-16
Identity = 54/180 (30.00%), Postives = 90/180 (50.00%), Query Frame = 3
Query:  138 EALRSYPLSLHKPVDLFIGVFSTANN-FKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTL-AICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLY--GLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYV 665
            E L + P    K +   + + ST +  F  R A+R TW      +   +A  F +G + + ++N  +  E++ + DI +  F+D Y+ +T KTL  +    T    AK+VMKTD D FV +D ++  L + +      Y  G +     P R+  SKWY+  + +P+  YPP+  G GY+
Sbjct:   64 EFLINEPNKCEKNIPFLVILISTTHKEFDARQAIRETWGDENNFKGIKIATLFLLGKNADPVLNQMVEQESQIFHDIIVEDFIDSYHNLTLKTLMGMRWVATFCSKAKYVMKTDSDIFVNMDNLIYKLLKPSTKPRRRYFTGYV-INGGPIRDVRSKWYMPRDLYPDSNYPPFCSGTGYI 242          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GT1_MOUSE (Beta-1,3-galactosyltransferase 1 OS=Mus musculus GN=B3galt1 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.596e-16
Identity = 54/180 (30.00%), Postives = 90/180 (50.00%), Query Frame = 3
Query:  138 EALRSYPLSLHKPVDLFIGVFSTANN-FKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTL-AICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLY--GLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYV 665
            E L + P    K +   + + ST +  F  R A+R TW      +   +A  F +G + + ++N  +  E++ + DI +  F+D Y+ +T KTL  +    T    AK+VMKTD D FV +D ++  L + +      Y  G +     P R+  SKWY+  + +P+  YPP+  G GY+
Sbjct:   64 EFLINEPNKCEKNIPFLVILISTTHKEFDARQAIRETWGDENNFKGIKIATLFLLGKNADPVLNQMVEQESQIFHDIIVEDFIDSYHNLTLKTLMGMRWVATFCSKAKYVMKTDSDIFVNMDNLIYKLLKPSTKPRRRYFTGYV-INGGPIRDVRSKWYMPRDLYPDSNYPPFCSGTGYI 242          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GT1_HUMAN (Beta-1,3-galactosyltransferase 1 OS=Homo sapiens GN=B3GALT1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.596e-16
Identity = 54/180 (30.00%), Postives = 90/180 (50.00%), Query Frame = 3
Query:  138 EALRSYPLSLHKPVDLFIGVFSTANN-FKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTL-AICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLY--GLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYV 665
            E L + P    K +   + + ST +  F  R A+R TW      +   +A  F +G + + ++N  +  E++ + DI +  F+D Y+ +T KTL  +    T    AK+VMKTD D FV +D ++  L + +      Y  G +     P R+  SKWY+  + +P+  YPP+  G GY+
Sbjct:   64 EFLINEPNKCEKNIPFLVILISTTHKEFDARQAIRETWGDENNFKGIKIATLFLLGKNADPVLNQMVEQESQIFHDIIVEDFIDSYHNLTLKTLMGMRWVATFCSKAKYVMKTDSDIFVNMDNLIYKLLKPSTKPRRRYFTGYV-INGGPIRDVRSKWYMPRDLYPDSNYPPFCSGTGYI 242          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GT1_GORGO (Beta-1,3-galactosyltransferase 1 OS=Gorilla gorilla gorilla GN=B3GALT1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.596e-16
Identity = 54/180 (30.00%), Postives = 90/180 (50.00%), Query Frame = 3
Query:  138 EALRSYPLSLHKPVDLFIGVFSTANN-FKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTL-AICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLY--GLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYV 665
            E L + P    K +   + + ST +  F  R A+R TW      +   +A  F +G + + ++N  +  E++ + DI +  F+D Y+ +T KTL  +    T    AK+VMKTD D FV +D ++  L + +      Y  G +     P R+  SKWY+  + +P+  YPP+  G GY+
Sbjct:   64 EFLINEPNKCEKNIPFLVILISTTHKEFDARQAIRETWGDENNFKGIKIATLFLLGKNADPVLNQMVEQESQIFHDIIVEDFIDSYHNLTLKTLMGMRWVATFCSKAKYVMKTDSDIFVNMDNLIYKLLKPSTKPRRRYFTGYV-INGGPIRDVRSKWYMPRDLYPDSNYPPFCSGTGYI 242          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3G5B_DANRE (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5B OS=Danio rerio GN=b3gnt5b PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-15
Identity = 58/177 (32.77%), Postives = 92/177 (51.98%), Query Frame = 3
Query:  168 HKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSG---TVAVRFFVGLHKNQIVNGELWN----EARTYGDIQLMPFVDYYNLITWKTLAICIFG-TDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHS--GLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            +K + L + V S++ NF+RR A+R TW   T + S    TV V F +GLH      G+L      E + Y D+    F+D ++ +T K L    +  T    A+F+M  DDD FV    ++  L+     +   L  G ++  S P+R+ ESK+Y+S + +P  +YP +  G GYV+
Sbjct:   84 NKDILLLLFVKSSSENFERRQAIRSTWGNETYIESTLGVTVKVLFALGLHPIPEERGKLKEDLMFEDQKYRDLIQQDFIDTFHNLTLKLLLQLGWKETYCHHAQFLMSADDDVFVHTPNLILYLQGFGQSNTRDLWIGGVHRGSPPNRDKESKYYVSRDLYPWLSYPDYTPGSGYVL 260          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3G5B_XENLA (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5B OS=Xenopus laevis GN=b3gnt5-B PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.677e-14
Identity = 55/179 (30.73%), Postives = 92/179 (51.40%), Query Frame = 3
Query:  165 LHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRS---GTVAVRFFVGLHKNQI----VNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFG---TDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLY-GLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            L++ V L + V +   N +RR A+R+TW     +RS     + V F +G+ ++ +       +L NE + + D+    F D ++ +T K L    FG   +   SAKF+M  DDD FV    ++T LK + + +   + G ++  S P R+  SK+Y+  E +P  +YP +  G  YVV
Sbjct:   83 LNEDVLLLLFVKTAPENRRRRNAIRKTWGNEDYIRSRYAANIKVVFALGVERDPVKSHHTQQDLVNENKRFKDLIQQDFSDTFHNLTLKLLLQ--FGWVNSFCPSAKFIMSADDDIFVHTPNLVTYLKSLPIETQDFWIGRVHRGSPPIRSKASKYYVPYEMYPWSSYPDYTAGAAYVV 259          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GT5_MOUSE (Beta-1,3-galactosyltransferase 5 OS=Mus musculus GN=B3galt5 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.265e-13
Identity = 54/170 (31.76%), Postives = 77/170 (45.29%), Query Frame = 3
Query:  171 KPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV-----SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYV 665
            KP  L + V S+      RMA+R+TW + T V+   V   F +G   +         E+  + DI    F D Y  +T KT+     G + V        +VMKTD D FV V  +   L + N  +    G I     P R   +KW++S  E+P + YPP+  G GYV
Sbjct:   53 KPPFLVLLVTSSHKQLAARMAIRKTWGRETSVQGQQVRTFFLLGTSDSTEEMDATTLESEQHRDIIQKDFKDAYFNLTLKTM----MGMEWVYHFCPQTAYVMKTDSDMFVNVGYLTELLLKKNKTTRFFTGYIKPHDFPIRQKFNKWFVSKFEYPWDRYPPFCSGTGYV 218          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GN3_MOUSE (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 OS=Mus musculus GN=B3gnt3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.265e-13
Identity = 57/188 (30.32%), Postives = 89/188 (47.34%), Query Frame = 3
Query:  123 HTTDLEALRSYPLS-LHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKN----QIVNGELWNEARTYGDIQLMPFVD-YYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            H  D   LR   ++   +PV L + + S+  N+ RR  +R TW +   VR   +   F VG  ++    +  N  L  EA+ YGDI    F D ++NL   + L +    T   +A FV+  DDD F   D ++T L+  +    L  G +     P R P SK++I      E+ YPP+  G G+++
Sbjct:   88 HCRDFPVLREPRVTKCAEPVFLLLAIKSSPANYGRRQMLRTTWARERRVRGAPLRRLFLVGSDRDPQQARKYNRLLELEAQKYGDILQWDFHDSFFNLTLKQVLFLEWQLTYCTNASFVLNGDDDVFAHTDNMVTYLQDHDPDQHLFVGHLIQNVGPIRVPWSKYFIPALVMAEDRYPPYCGGGGFLL 275          
The following BLAST results are available for this feature:
BLAST of FC875390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
B3GT1_PONPY1.596e-1630.00Beta-1,3-galactosyltransferase 1 OS=Pongo pygmaeus... [more]
B3GT1_PANTR1.596e-1630.00Beta-1,3-galactosyltransferase 1 OS=Pan troglodyte... [more]
B3GT1_PANPA1.596e-1630.00Beta-1,3-galactosyltransferase 1 OS=Pan paniscus G... [more]
B3GT1_MOUSE1.596e-1630.00Beta-1,3-galactosyltransferase 1 OS=Mus musculus G... [more]
B3GT1_HUMAN1.596e-1630.00Beta-1,3-galactosyltransferase 1 OS=Homo sapiens G... [more]
B3GT1_GORGO1.596e-1630.00Beta-1,3-galactosyltransferase 1 OS=Gorilla gorill... [more]
B3G5B_DANRE6.706e-1532.77UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
B3G5B_XENLA5.677e-1430.73UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
B3GT5_MOUSE1.265e-1331.76Beta-1,3-galactosyltransferase 5 OS=Mus musculus G... [more]
B3GN3_MOUSE1.265e-1330.32UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]

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Properties
Property NameValue
Genbank descriptionC31403D07EF CTVClemen1 Citrus clementina cDNA clone C31403D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875390 ID=FC875390; Name=FC875390; organism=Citrus clementina; type=EST; length=668bp
ATACATCCTTCGCTTATCGCGAAACTTTGGAGCCATGGCTGGTTAATGAA
GTTAGGATTTCTGGAGACCTGAAATTAATTTCCGTCTTGGCCAGTGGTTT
ACCCACGTCCGAGGATTCAGAGCATACAACTGATTTAGAAGCACTAAGAT
CTTATCCTCTATCTCTTCATAAACCAGTGGATTTGTTCATTGGTGTTTTC
TCAACAGCAAATAATTTTAAGCGAAGAATGGCAGTTAGAAGGACATGGAT
GCAGTACACTGAAGTGCGGTCAGGAACAGTTGCAGTTCGCTTTTTTGTTG
GTTTGCATAAAAACCAGATAGTCAATGGGGAACTCTGGAATGAGGCACGA
ACGTATGGAGACATACAGCTGATGCCTTTTGTTGACTACTACAATCTCAT
CACCTGGAAAACTTTAGCGATCTGCATCTTTGGGACGGATGTTGTTTCAG
CAAAATTTGTCATGAAGACAGATGACGATGCATTTGTTCGTGTGGATGAA
GTGCTGACTTCTTTAAAGAGGATTAATGTGCATTCTGGGTTGCTTTATGG
ACTCATTAACTCTGAGTCTCGACCACATCGGAATCCTGAAAGCAAGTGGT
ACATTAGCCTTGAGGAATGGCCTGAAGAAACTTACCCCCCTTGGGCGCAT
GGTCCTGGTTATGTTGTG
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