FC875390

Overview
NameFC875390
Unique NameFC875390
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10220 contig Ccv1_Contig10220:1..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GN3_HUMAN (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 OS=Homo sapiens GN=B3GNT3 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.265e-13
Identity = 55/176 (31.25%), Postives = 87/176 (49.43%), Query Frame = 3
Query:  156 PLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGL----HKNQIVNGELWNEARTYGDIQLMPFVD-YYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            P    +PV L + + S+ +N+ RR  +RRTW +  +VR   + + F VG     H+ + VN  L  EA+T+GDI    F D ++NL   + L +    T   +A FV+  DDD F   D ++  L+  +    L  G +     P R   SK+Y+       E YPP+  G G+++
Sbjct:  100 PSKCAQPVFLLLVIKSSPSNYVRRELLRRTWGRERKVRGLQLRLLFLVGTASNPHEARKVNRLLELEAQTHGDILQWDFHDSFFNLTLKQVLFLQWQETRCANASFVLNGDDDVFAHTDNMVFYLQDHDPGRHLFVGQLIQNVGPIRAFWSKYYVPEVVTQNERYPPYCGGGGFLL 275          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GN9_BOVIN (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 OS=Bos taurus GN=B3GNT9 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 63/200 (31.50%), Postives = 92/200 (46.00%), Query Frame = 3
Query:  147 RSYPLSLHKP------------VDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQ-IVNGEL-------WN-----EARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV-SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            R +PL +++P             DL I V S A +F+RR AVR+TW     V+   V   F +G+ +    V GE        W+     E+R Y DI L  F D +  +T K +    + +D     +FV K D D FV V  +L  L   +    LL G +  ++RP R   SK+YI    +    YP +A G G+V+
Sbjct:   94 RRFPLLINQPHKCQGNGAFPRGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQGALVRRVFLLGVPRGTGTVAGEAEAGTQTHWSALLRAESRAYADILLWAFDDTFFNLTLKEIHFLAWASDYCPDVRFVFKGDADVFVHVGNLLEFLAPRDPAQDLLAGDVIVQARPIRVRASKYYIPEAVYGLPAYPAYAGGGGFVL 293          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GL1_PONAB (UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1 OS=Pongo abelii GN=B3GALNT1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 53/179 (29.61%), Postives = 88/179 (49.16%), Query Frame = 3
Query:  144 LRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLH---KNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV-SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            LR +    H+   L I V S  ++ K R A+R TW +        V   F +G     +++++   L +E   YGDI    F+D YN +T KT+    + T+   +AK+VMKTD D F+    ++  L  +N       G    ++  +R    K +IS +E+P + +PP+  G GY++
Sbjct:   67 LREHSNCSHQNPFLVILVTSHPSDVKARQAIRVTWGEKKSWWGYEVLTFFLLGQEAEKEDKMLALSLEDEHLLYGDIIRQDFLDTYNNLTLKTIMAFRWVTEFCPNAKYVMKTDTDVFINTGNLVKYLLNLNHSEKFFTGYPLIDNYSYRGFYQKTHISYQEYPFKVFPPYCSGLGYIM 245          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GL1_HUMAN (UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=B3GALNT1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 53/179 (29.61%), Postives = 88/179 (49.16%), Query Frame = 3
Query:  144 LRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLH---KNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV-SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            LR +    H+   L I V S  ++ K R A+R TW +        V   F +G     +++++   L +E   YGDI    F+D YN +T KT+    + T+   +AK+VMKTD D F+    ++  L  +N       G    ++  +R    K +IS +E+P + +PP+  G GY++
Sbjct:   67 LREHSNCSHQNPFLVILVTSHPSDVKARQAIRVTWGEKKSWWGYEVLTFFLLGQEAEKEDKMLALSLEDEHLLYGDIIRQDFLDTYNNLTLKTIMAFRWVTEFCPNAKYVMKTDTDVFINTGNLVKYLLNLNHSEKFFTGYPLIDNYSYRGFYQKTHISYQEYPFKVFPPYCSGLGYIM 245          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GT4_MOUSE (Beta-1,3-galactosyltransferase 4 OS=Mus musculus GN=B3galt4 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.679e-13
Identity = 60/198 (30.30%), Postives = 94/198 (47.47%), Query Frame = 3
Query:  174 PVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVS-----AKFVMKTDDDAFVRVDEVLTSL------------------KRINVHS-------GLLY-GLINSESRPHRNPESKWYISLEEWPEE--TYPPWAHGPGYVV 668
            P  L I V +   +  +R A+R +W    E R   V   F +G  + Q +  +L +E+  + DI    F D Y  +T KTL+    G + V+     A++++KTDDD +V V E+++ L                  +   +H         LLY G ++   RP R PES+ ++S E WPE    +PP+A G GYV+
Sbjct:   70 PPFLLILVCTAPEHLNQRNAIRASWGAIREARGFRVQTLFLLGKPRRQQL-ADLSSESAAHRDILQASFQDSYRNLTLKTLS----GLNWVNKYCPMARYILKTDDDVYVNVPELVSELIQRGGPSEQWQKGKEAQEETTAIHEEHRGQAVPLLYLGRVHWRVRPTRTPESRHHVSEELWPENWGPFPPYASGTGYVL 262          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3G5A_XENLA (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5A OS=Xenopus laevis GN=b3gnt5-A PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.679e-13
Identity = 56/186 (30.11%), Postives = 93/186 (50.00%), Query Frame = 3
Query:  144 LRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRS---GTVAVRFFVGLH----KNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFG---TDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLY-GLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            L +  + L++ V L + V +   N +RR A+R TW     +RS     + V F +G      K++ +  +L NE + + D+    F D ++ +T K L    FG   +   SAKF+M  DDD FV    +++ LK + + +   + G ++  S P R   SK+Y+  E +P  +YP +  G  YVV
Sbjct:   76 LNNRHICLNEDVLLLLFVKTAPENRRRRDAIRNTWGNEDFIRSQYDANIKVVFALGAEGDPVKSREIQQDLVNENKRFKDLIQQDFSDTFHNLTLKLLLQ--FGWVNSFCPSAKFIMSADDDIFVHTPNLVSYLKSLPIETQDFWIGRVHRGSPPIRRKTSKYYVPYEMYPWSSYPDYTAGAAYVV 259          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GT4_RAT (Beta-1,3-galactosyltransferase 4 OS=Rattus norvegicus GN=B3galt4 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.197e-13
Identity = 61/198 (30.81%), Postives = 91/198 (45.96%), Query Frame = 3
Query:  174 PVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVS-----AKFVMKTDDDAFVRVDEVLTSL------------------KRINVHS-------GLLY-GLINSESRPHRNPESKWYISLEEWPEE--TYPPWAHGPGYVV 668
            P  L I V +   +  +R A+R +W    E R   V   F +G    Q    +L +E+   GD+    F D Y  +T KTL     G + V+     A++++KTDDD +V V E+++ L                  +   VH         LLY G ++   RP R PES+ ++S E WPE    +PP+A G GYV+
Sbjct:   70 PPFLLILVCTAPEHLNQRNAIRGSWGAIREARGFRVQTLFLLGEPMGQQF-ADLASESAAQGDVLQASFQDSYRNLTLKTLT----GLNWVNKYCPMARYILKTDDDVYVNVPELVSELIQRGGPSEQWQKGKEPQEETTAVHKEHKGQAVPLLYLGRVHWRVRPTRTPESRHHVSEELWPENWGPFPPYASGTGYVL 262          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GL1_PIG (UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1 OS=Sus scrofa GN=B3GALNT1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 51/179 (28.49%), Postives = 87/179 (48.60%), Query Frame = 3
Query:  144 LRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLH---KNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV-SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            LR +    H+   L I V S   + K R A+R TW +        V   F +G     +++++   L +E   YGDI    F+D YN +T KT+    + T+   +A+++MKTD D F+    ++  L  +N       G    ++  +R    K +IS +E+P + +PP+  G GY++
Sbjct:   67 LREHSNCSHQNPFLVILVTSHPADVKARQAIRVTWGEKKSWWGYEVLTFFLLGQQAEREDKVLALSLEDEHLLYGDIIRQDFLDTYNNLTLKTIMAFRWVTEFCPNARYIMKTDTDVFINTGNLVKYLLNLNHSEKFFTGYPLIDNYSYRGFYQKTHISYQEYPFKVFPPYCSGLGYIM 245          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GN5_XENTR (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 OS=Xenopus tropicalis GN=b3gnt5 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.115e-12
Identity = 53/178 (29.78%), Postives = 90/178 (50.56%), Query Frame = 3
Query:  168 HKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRS---GTVAVRFFVGLH----KNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFG---TDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLY-GLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            ++ V L + V ++  N +RR A+R+TW     +RS     + V F +G+     K+     +L  E + + D+    F D ++ +T K L    FG   +   SAKF+M  DDD FV    +++ LK + + +   + G ++  S P R+  SK+Y+  E +P  +YP +  G  YVV
Sbjct:   84 NEDVLLLLFVKTSPENRRRRNAIRKTWGNEDYIRSQYAANIKVVFALGIEADPVKSHQTQKDLVIENKRFNDLIQQDFKDTFHNLTLKLLLQ--FGWVNSYCPSAKFIMSADDDIFVHTPNLVSYLKSLPIETQDFWIGRVHRGSPPIRSKTSKYYVPYEMYPWSSYPDYTAGAAYVV 259          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GL1_RAT (UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1 OS=Rattus norvegicus GN=B3galnt1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.115e-12
Identity = 50/166 (30.12%), Postives = 82/166 (49.40%), Query Frame = 3
Query:  183 LFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLH---KNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV-SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            L I V S  ++ K R A+R TW +        V   F +G     +++++   L +E   YGDI    F+D YN +T KT+    +  +   +AK+VMKTD D F+    ++  L  +N       G    E+  +R    K +IS +E+P + +PP+  G GY++
Sbjct:   80 LVILVTSRPSDVKARQAIRVTWGEKKTWWGHEVLTFFLLGQEAEREDKVLALSLEDEHALYGDIIRQDFLDTYNNLTLKTIMAFRWVIEFCPNAKYVMKTDTDVFINTGNLVKYLLNLNHSEKFFTGYPLIENYSYRGFFHKNHISYQEYPFKVFPPYCSGLGYIM 245          
The following BLAST results are available for this feature:
BLAST of FC875390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
B3GN3_HUMAN1.265e-1331.25UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
B3GN9_BOVIN2.817e-1331.50UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
B3GL1_PONAB2.817e-1329.61UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransfer... [more]
B3GL1_HUMAN2.817e-1329.61UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransfer... [more]
B3GT4_MOUSE3.679e-1330.30Beta-1,3-galactosyltransferase 4 OS=Mus musculus G... [more]
B3G5A_XENLA3.679e-1330.11UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
B3GT4_RAT8.197e-1330.81Beta-1,3-galactosyltransferase 4 OS=Rattus norvegi... [more]
B3GL1_PIG1.071e-1228.49UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransfer... [more]
B3GN5_XENTR3.115e-1229.78UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
B3GL1_RAT3.115e-1230.12UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransfer... [more]

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Properties
Property NameValue
Genbank descriptionC31403D07EF CTVClemen1 Citrus clementina cDNA clone C31403D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875390 ID=FC875390; Name=FC875390; organism=Citrus clementina; type=EST; length=668bp
ATACATCCTTCGCTTATCGCGAAACTTTGGAGCCATGGCTGGTTAATGAA
GTTAGGATTTCTGGAGACCTGAAATTAATTTCCGTCTTGGCCAGTGGTTT
ACCCACGTCCGAGGATTCAGAGCATACAACTGATTTAGAAGCACTAAGAT
CTTATCCTCTATCTCTTCATAAACCAGTGGATTTGTTCATTGGTGTTTTC
TCAACAGCAAATAATTTTAAGCGAAGAATGGCAGTTAGAAGGACATGGAT
GCAGTACACTGAAGTGCGGTCAGGAACAGTTGCAGTTCGCTTTTTTGTTG
GTTTGCATAAAAACCAGATAGTCAATGGGGAACTCTGGAATGAGGCACGA
ACGTATGGAGACATACAGCTGATGCCTTTTGTTGACTACTACAATCTCAT
CACCTGGAAAACTTTAGCGATCTGCATCTTTGGGACGGATGTTGTTTCAG
CAAAATTTGTCATGAAGACAGATGACGATGCATTTGTTCGTGTGGATGAA
GTGCTGACTTCTTTAAAGAGGATTAATGTGCATTCTGGGTTGCTTTATGG
ACTCATTAACTCTGAGTCTCGACCACATCGGAATCCTGAAAGCAAGTGGT
ACATTAGCCTTGAGGAATGGCCTGAAGAAACTTACCCCCCTTGGGCGCAT
GGTCCTGGTTATGTTGTG
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