FC875390

Overview
NameFC875390
Unique NameFC875390
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10220 contig Ccv1_Contig10220:1..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GT2_MOUSE (Beta-1,3-galactosyltransferase 2 OS=Mus musculus GN=B3galt2 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.939e-12
Identity = 48/167 (28.74%), Postives = 79/167 (47.31%), Query Frame = 3
Query:  183 LFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFF---VGLHKNQIVNGELWNEARTYGDIQLMPFVD-YYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLY--GLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYV 665
            L + + +     + R A+R+TW   T +  G   +R F   + +  N  +   +  E+R Y DI    ++D YYNL     + +    T      +VMKTD D FV  + ++  L + ++     Y  G +     P+RN +SKWY+  + +P E YP +  G GYV
Sbjct:  153 LILLIAAEPGQIEARRAIRQTWGNET-LAPGIQIIRVFLLGISIKLNGYLQHAIQEESRQYHDIIQQEYLDTYYNLTIKTLMGMNWVATYCPHTPYVMKTDSDMFVNTEYLIHKLLKPDLPPRHNYFTGYLMRGYAPNRNKDSKWYMPPDLYPSERYPVFCSGTGYV 318          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GN9_MOUSE (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 OS=Mus musculus GN=B3gnt9 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.939e-12
Identity = 56/173 (32.37%), Postives = 80/173 (46.24%), Query Frame = 3
Query:  180 DLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGE---------LWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV-SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            DL I V S A +F+RR AVR+TW     V+   V   F +G+ K     G          L  E+R Y DI L  F D +  +T K +    + +       FV K D D FV V  +L  L+  +    LL G +  ++RP R   SK++I    +    YP +A G G+V+
Sbjct:  119 DLLIAVKSVAADFERREAVRQTWGAEGRVQGALVRRVFLLGVPKGAGSGGAGTRSHWRTLLEAESRAYADILLWAFEDTFFNLTLKEIHFLSWASAFCPDVHFVFKGDADVFVHVRNLLQFLELRDPAQDLLAGDVIVQARPIRARASKYFIPRAVYGLPVYPAYAGGGGFVL 291          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GN5_HUMAN (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 OS=Homo sapiens GN=B3GNT5 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.939e-12
Identity = 54/173 (31.21%), Postives = 80/173 (46.24%), Query Frame = 3
Query:  183 LFIGVFSTANNFKRRMAVRRTWMQYTEVRS---GTVAVRFFVG----LHKNQIVNGELWNEARTYGDIQLMPFVD-YYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVD---EVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            L + V +   N+ RR  +RRTW     VRS     +   F +G    L   ++     W + R Y DI    FVD +YNL     +      T    AKF+M  DDD F+ +    E L SL++I V    + G ++  + P R+  SK+Y+S E +    YP +  G  YV+
Sbjct:   90 LLLFVKTAPENYDRRSGIRRTWGNENYVRSQLNANIKTLFALGTPNPLEGEELQRKLAWEDQR-YNDIIQQDFVDSFYNLTLKLLMQFSWANTYCPHAKFLMTADDDIFIHMPNLIEYLQSLEQIGVQDFWI-GRVHRGAPPIRDKSSKYYVSYEMYQWPAYPDYTAGAAYVI 260          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GN9_HUMAN (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 OS=Homo sapiens GN=B3GNT9 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.063e-12
Identity = 61/201 (30.35%), Postives = 88/201 (43.78%), Query Frame = 3
Query:  147 RSYPLSLHKP------------VDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNG--ELWNEART------------YGDIQLMPFVDYYNLITWKTLAICIFGTDVV-SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            R +PL +++P             DL I V S A +F+RR AVR+TW     V+   V   F +G+ +     G  E+   ART            Y DI L  F D +  +T K +    + +      +FV K D D FV V  +L  L   +    LL G +   +RP R   SK+YI    +    YP +A G G+V+
Sbjct:   94 RRFPLLINQPHKCRGDGAPGGRPDLLIAVKSVAEDFERRQAVRQTWGAEGRVQGALVRRVFLLGVPRGAGSGGADEVGEGARTHWRALLRAESLAYADILLWAFDDTFFNLTLKEIHFLAWASAFCPDVRFVFKGDADVFVNVGNLLEFLAPRDPAQDLLAGDVIVHARPIRTRASKYYIPEAVYGLPAYPAYAGGGGFVL 294          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GL1_MUSSI (UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1 OS=Mus spicilegus GN=B3galnt1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.063e-12
Identity = 51/179 (28.49%), Postives = 86/179 (48.04%), Query Frame = 3
Query:  144 LRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLH---KNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV-SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            LR +    H+   L I V S  ++ K R A+R TW +        V   F +G     +++ +   L +E   YGDI    F+D YN +T KT+    +  +   +AK++MKTD D F+    ++  L  +N       G    ++  +R    K +IS +E+P + +PP+  G GY++
Sbjct:   67 LREHSNCSHQNPFLVILVTSRPSDVKARQAIRVTWGEKKSWWGYEVLTFFLLGQQAEREDKTLALSLEDEHVLYGDIIRQDFLDTYNNLTLKTIMAFRWVMEFCPNAKYIMKTDTDVFINTGNLVKYLLNLNHSEKFFTGYPLIDNYSYRGFFHKNHISYQEYPFKVFPPYCSGLGYIM 245          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GL1_MOUSE (UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1 OS=Mus musculus GN=B3galnt1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.063e-12
Identity = 51/179 (28.49%), Postives = 86/179 (48.04%), Query Frame = 3
Query:  144 LRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLH---KNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV-SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            LR +    H+   L I V S  ++ K R A+R TW +        V   F +G     +++ +   L +E   YGDI    F+D YN +T KT+    +  +   +AK++MKTD D F+    ++  L  +N       G    ++  +R    K +IS +E+P + +PP+  G GY++
Sbjct:   67 LREHSNCSHQNPFLVILVTSRPSDVKARQAIRVTWGEKKSWWGYEVLTFFLLGQQAEREDKTLALSLEDEHVLYGDIIRQDFLDTYNNLTLKTIMAFRWVMEFCPNAKYIMKTDTDVFINTGNLVKYLLNLNHSEKFFTGYPLIDNYSYRGFFHKNHISYQEYPFKVFPPYCSGLGYIM 245          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GT4_CANFA (Beta-1,3-galactosyltransferase 4 OS=Canis familiaris GN=B3GALT4 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.184e-11
Identity = 62/205 (30.24%), Postives = 88/205 (42.93%), Query Frame = 3
Query:  174 PVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVG----LHKNQIVNG-ELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVS-AKFVMKTDDDAFVRVDEVLTSLKRINVH-------------------------------SGLLY-GLINSESRPHRNPESKWYISLEEWPEE--TYPPWAHGPGYVV 668
            P  L I V +   N  +R A+R +W    E +   V + F +G     H  +  +  +L  EA   GDI    F D Y  +T KTL+   +     S A++++KTDDD FV V E+++ L R   H                                 LLY G ++    P R P SK  IS E+WP     +PP+A G GYV+
Sbjct:   70 PPFLLILVCTAPENLNQRNAIRASWGGLREAQGFRVQILFLLGEPSLWHPTKEPHDIDLVREAAAQGDILQAAFRDSYRNLTLKTLSGLNWADKHCSMARYILKTDDDVFVNVPELVSELIRRGGHWEQWEKGKEPPRAVKAGDKEWEERPILKSQPMPLLYLGRVHWRVHPSRTPGSKHQISEEQWPPTWGPFPPYASGTGYVL 274          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: YI036_HUMAN (Putative UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase LOC402377 OS=Homo sapiens PE=5 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.546e-11
Identity = 43/168 (25.60%), Postives = 84/168 (50.00%), Query Frame = 3
Query:  171 KPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV-SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLY-GLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            K + L   +FS+  N  RR  +R+TW   T V+   +   F +G+  +     E+  E+    DI    F+D     T K +A+  +      +A F++K D++ FV +  ++  L  +  H   +Y G +  +  P+R+P+++ ++ L E+PE+ YP +  G  +++
Sbjct:   82 KNIFLLSLIFSSPGNGTRRDLIRKTWGNVTSVQGHPILTLFALGMPVSVTTQKEINKESCKNNDIIEGIFLDSSENQTLKIIAMIQWAVAFCPNALFILKVDEETFVNLPSLVDYLLNLKEHLEDIYVGRVLHQVTPNRDPQNRDFVPLSEYPEKYYPDYCSGEAFIM 249          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GTD_ARATH (Probable beta-1,3-galactosyltransferase 13 OS=Arabidopsis thaliana GN=B3GALT13 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 48/168 (28.57%), Postives = 82/168 (48.81%), Query Frame = 3
Query:  186 FIGVFSTANNFKRRMAVRRTWM-------QYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            F+G+ +   +  RR A+R TWM       +  E  +G +A+RF +G  K++    EL +E   Y D  L+   + Y+ + +KTLA       +  ++F +K DDD ++R D +   L +   HS    G +  +     +P+ KWY  L +   + Y   A+GP Y +
Sbjct:   87 FVGIQTGFRSAGRRRALRNTWMPSDPEGLRRLEESTG-LAIRFIIGKTKDEAKMVELRSEVAMYDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERGHSQTYLGCM-KKGPVFTDPKLKWYEPLADLLGKEYFLHAYGPIYAL 252          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GT2_PONAB (Beta-1,3-galactosyltransferase 2 OS=Pongo abelii GN=B3GALT2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 47/166 (28.31%), Postives = 77/166 (46.39%), Query Frame = 3
Query:  183 LFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLH--KNQIVNGELWNEARTYGDIQLMPFVD-YYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLY--GLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYV 665
            L + + +     + R A+R+TW   +      +   F +GL    N  +   +  E+R Y DI    ++D YYNL     + +    T      +VMKTD D FV  + ++  L + ++     Y  G +     P+RN +SKWY+  + +P E YP +  G GYV
Sbjct:  153 LILLIAAEPGQIEARRAIRQTWGNESLAPGIQITRIFLLGLSIKLNGYLQRAILEESRQYHDIIQQEYLDTYYNLTIKTLMGMNWVATYCPHIPYVMKTDSDMFVNTEYLINKLLKPDLPPRHNYFTGYLMRGYAPNRNKDSKWYMPPDLYPSERYPVFCSGTGYV 318          
The following BLAST results are available for this feature:
BLAST of FC875390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
B3GT2_MOUSE6.939e-1228.74Beta-1,3-galactosyltransferase 2 OS=Mus musculus G... [more]
B3GN9_MOUSE6.939e-1232.37UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
B3GN5_HUMAN6.939e-1231.21UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
B3GN9_HUMAN9.063e-1230.35UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
B3GL1_MUSSI9.063e-1228.49UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransfer... [more]
B3GL1_MOUSE9.063e-1228.49UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransfer... [more]
B3GT4_CANFA1.184e-1130.24Beta-1,3-galactosyltransferase 4 OS=Canis familiar... [more]
YI036_HUMAN1.546e-1125.60Putative UDP-GlcNAc:betaGal beta-1,3-N-acetylgluco... [more]
B3GTD_ARATH2.637e-1128.57Probable beta-1,3-galactosyltransferase 13 OS=Arab... [more]
B3GT2_PONAB2.637e-1128.31Beta-1,3-galactosyltransferase 2 OS=Pongo abelii G... [more]

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Properties
Property NameValue
Genbank descriptionC31403D07EF CTVClemen1 Citrus clementina cDNA clone C31403D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875390 ID=FC875390; Name=FC875390; organism=Citrus clementina; type=EST; length=668bp
ATACATCCTTCGCTTATCGCGAAACTTTGGAGCCATGGCTGGTTAATGAA
GTTAGGATTTCTGGAGACCTGAAATTAATTTCCGTCTTGGCCAGTGGTTT
ACCCACGTCCGAGGATTCAGAGCATACAACTGATTTAGAAGCACTAAGAT
CTTATCCTCTATCTCTTCATAAACCAGTGGATTTGTTCATTGGTGTTTTC
TCAACAGCAAATAATTTTAAGCGAAGAATGGCAGTTAGAAGGACATGGAT
GCAGTACACTGAAGTGCGGTCAGGAACAGTTGCAGTTCGCTTTTTTGTTG
GTTTGCATAAAAACCAGATAGTCAATGGGGAACTCTGGAATGAGGCACGA
ACGTATGGAGACATACAGCTGATGCCTTTTGTTGACTACTACAATCTCAT
CACCTGGAAAACTTTAGCGATCTGCATCTTTGGGACGGATGTTGTTTCAG
CAAAATTTGTCATGAAGACAGATGACGATGCATTTGTTCGTGTGGATGAA
GTGCTGACTTCTTTAAAGAGGATTAATGTGCATTCTGGGTTGCTTTATGG
ACTCATTAACTCTGAGTCTCGACCACATCGGAATCCTGAAAGCAAGTGGT
ACATTAGCCTTGAGGAATGGCCTGAAGAAACTTACCCCCCTTGGGCGCAT
GGTCCTGGTTATGTTGTG
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