FC875390

Overview
NameFC875390
Unique NameFC875390
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10220 contig Ccv1_Contig10220:1..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GT2_HUMAN (Beta-1,3-galactosyltransferase 2 OS=Homo sapiens GN=B3GALT2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 47/166 (28.31%), Postives = 77/166 (46.39%), Query Frame = 3
Query:  183 LFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLH--KNQIVNGELWNEARTYGDIQLMPFVD-YYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLY--GLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYV 665
            L + + +     + R A+R+TW   +      +   F +GL    N  +   +  E+R Y DI    ++D YYNL     + +    T      +VMKTD D FV  + ++  L + ++     Y  G +     P+RN +SKWY+  + +P E YP +  G GYV
Sbjct:  153 LILLIAAEPGQIEARRAIRQTWGNESLAPGIQITRIFLLGLSIKLNGYLQRAILEESRQYHDIIQQEYLDTYYNLTIKTLMGMNWVATYCPHIPYVMKTDSDMFVNTEYLINKLLKPDLPPRHNYFTGYLMRGYAPNRNKDSKWYMPPDLYPSERYPVFCSGTGYV 318          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3G5A_DANRE (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5A OS=Danio rerio GN=b3gnt5a PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 56/178 (31.46%), Postives = 87/178 (48.88%), Query Frame = 3
Query:  168 HKPVDLFIGVFSTANNFKRRMAVRRTW--MQYTEVRSGTVA-VRFFVGLHKNQ----IVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTD-VVSAKFVMKTDDDAFVRVDEV---LTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            +K V L + V S+  NFKRR A+R TW    Y     G V  V F +G+  ++     +  EL  E   + D+    F+D ++ +T K L    +  +    A F+M  DDD F+ V  +   L  LK  NV + L  G ++  + P R  +SK+Y+  + +   +YP +  G GYVV
Sbjct:   85 NKDVLLLLFVKSSPGNFKRRQAIRSTWGNESYISQELGVVVKVVFAMGVRPDRSGHKTMQRELRKEHMAHHDLIQQDFLDTFHNLTVKLLLQFRWTHENCAHAHFLMSADDDVFIHVPNLVHYLQELKSQNVRN-LWVGHVHRGAPPVRKRDSKYYMPFDMYQWSSYPDYTAGAGYVV 261          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GTE_ARATH (Probable beta-1,3-galactosyltransferase 14 OS=Arabidopsis thaliana GN=B3GALT14 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 46/168 (27.38%), Postives = 81/168 (48.21%), Query Frame = 3
Query:  186 FIGVFSTANNFKRRMAVRRTWM-------QYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            F+G+ +   +  RR ++R+TWM       +  E  +G +A+RF +G  K++    +L  E   Y D  L+   + Y+ + +KTLA       +  ++F +K DDD ++R D +   L +   HS    G +  +     +P+ KWY  L     + Y   A+GP Y +
Sbjct:   89 FVGIQTGFGSAGRRRSLRKTWMPSDPEGLRRLEESTG-LAIRFMIGKTKSEEKMAQLRREIAEYDDFVLLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERSHSQTYLGCL-KKGPVFTDPKLKWYEPLSHLLGKEYFLHAYGPIYAL 254          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: BRN_DROME (Beta-1,3-galactosyltransferase brn OS=Drosophila melanogaster GN=brn PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 52/169 (30.77%), Postives = 84/169 (49.70%), Query Frame = 3
Query:  171 KPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVS-AKFVMKTDDDAFVRVDEVLTSLKR--INVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            +P  L + + S   N +RR A+RRTW    E R   V +R    L   +    ++  E+R +GDI    F D Y   T KT+    + +D  + ++F +  DDD +V    VL  L R   +    LL+     ++ P R+  SKWY+SLEE+P + +PP+     +++
Sbjct:   76 QPARLTMLIKSAVGNSRRREAIRRTWGY--EGRFSDVHLRRVFLLGTAEDSEKDVAWESREHGDILQAEFTDAYFNNTLKTMLGMRWASDQFNRSEFYLFVDDDYYVSAKNVLKFLGRGRQSHQPELLFAGHVFQTSPLRHKFSKWYVSLEEYPFDRWPPYVTAGAFIL 242          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GN7_RAT (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 OS=Rattus norvegicus GN=B3gnt7 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 55/189 (29.10%), Postives = 82/189 (43.39%), Query Frame = 3
Query:  147 RSYPLSLHKP------VDLFIGVFSTANNFKRRMAVRRTWMQYTEVRS---GTVAVRFFVGLHKNQIVNGE----LWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV--SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            R +P+ L+ P      V L + V S      RR  +R+TW    E      G V   F +G    Q         L  E R YGDI    F+D +  +T K +    +  D+   +  F+ K DDD FV    +L  L        L  G +   +RP R  ++K+YI    + + TYPP+A G G+++
Sbjct:  114 RYFPMLLNHPEKCAGDVYLLVVVKSVITQHDRREVIRQTWGHEWESAGPDRGAVRTLFLLGTASKQEERTHYQQLLAYEDRLYGDILQWDFLDSFFNLTLKEIHFLKW-LDIYCPNVPFIFKGDDDVFVNPTNLLEFLSDRQPQENLFVGDVLKHARPIRKKDNKYYIPAVMYSKATYPPYAGGGGFLM 301          
The following BLAST results are available for this feature:
BLAST of FC875390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
B3GT2_HUMAN2.637e-1128.31Beta-1,3-galactosyltransferase 2 OS=Homo sapiens G... [more]
B3G5A_DANRE2.637e-1131.46UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
B3GTE_ARATH5.874e-1127.38Probable beta-1,3-galactosyltransferase 14 OS=Arab... [more]
BRN_DROME7.672e-1130.77Beta-1,3-galactosyltransferase brn OS=Drosophila m... [more]
B3GN7_RAT7.672e-1129.10UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]

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Properties
Property NameValue
Genbank descriptionC31403D07EF CTVClemen1 Citrus clementina cDNA clone C31403D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875390 ID=FC875390; Name=FC875390; organism=Citrus clementina; type=EST; length=668bp
ATACATCCTTCGCTTATCGCGAAACTTTGGAGCCATGGCTGGTTAATGAA
GTTAGGATTTCTGGAGACCTGAAATTAATTTCCGTCTTGGCCAGTGGTTT
ACCCACGTCCGAGGATTCAGAGCATACAACTGATTTAGAAGCACTAAGAT
CTTATCCTCTATCTCTTCATAAACCAGTGGATTTGTTCATTGGTGTTTTC
TCAACAGCAAATAATTTTAAGCGAAGAATGGCAGTTAGAAGGACATGGAT
GCAGTACACTGAAGTGCGGTCAGGAACAGTTGCAGTTCGCTTTTTTGTTG
GTTTGCATAAAAACCAGATAGTCAATGGGGAACTCTGGAATGAGGCACGA
ACGTATGGAGACATACAGCTGATGCCTTTTGTTGACTACTACAATCTCAT
CACCTGGAAAACTTTAGCGATCTGCATCTTTGGGACGGATGTTGTTTCAG
CAAAATTTGTCATGAAGACAGATGACGATGCATTTGTTCGTGTGGATGAA
GTGCTGACTTCTTTAAAGAGGATTAATGTGCATTCTGGGTTGCTTTATGG
ACTCATTAACTCTGAGTCTCGACCACATCGGAATCCTGAAAGCAAGTGGT
ACATTAGCCTTGAGGAATGGCCTGAAGAAACTTACCCCCCTTGGGCGCAT
GGTCCTGGTTATGTTGTG
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